Wall clock time and date at job start Tue Mar 31 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31680 * 119.63806 * 2 1 4 4 C 1.31868 * 121.96190 * 179.97438 * 3 2 1 5 5 C 1.38992 * 120.98837 * 0.02562 * 4 3 2 6 6 N 1.39989 * 120.41576 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00064 * 146.28910 * 6 5 4 8 8 O 1.21282 * 120.00079 * 354.83764 * 7 6 5 9 9 C 1.50700 * 119.99630 * 174.83868 * 7 6 5 10 10 C 1.53003 * 109.46659 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47302 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00404 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99570 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00147 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46926 * 120.00175 * 15 13 11 18 18 H 1.48495 * 109.47092 * 240.00137 * 15 13 11 19 19 C 1.38965 * 119.16800 * 0.23375 * 5 4 3 20 20 C 1.39592 * 119.64447 * 179.97438 * 2 1 3 21 21 C 1.47737 * 120.52542 * 0.02562 * 20 2 1 22 22 O 1.21469 * 120.00238 * 6.14649 * 21 20 2 23 23 O 1.34706 * 119.99836 * 186.13995 * 21 20 2 24 24 H 1.09002 * 109.46934 * 96.86649 * 1 2 3 25 25 H 1.09000 * 109.46856 * 216.86919 * 1 2 3 26 26 H 1.08996 * 109.47152 * 336.86442 * 1 2 3 27 27 H 1.08001 * 119.50609 * 179.97438 * 4 3 2 28 28 H 0.97000 * 120.00161 * 326.29639 * 6 5 4 29 29 H 1.08995 * 109.47408 * 60.00370 * 9 7 6 30 30 H 1.08998 * 109.47447 * 299.99738 * 9 7 6 31 31 H 1.09000 * 109.47385 * 299.99752 * 10 9 7 32 32 H 1.08997 * 109.47646 * 59.99705 * 10 9 7 33 33 H 0.97006 * 119.99995 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.88900 * 179.72127 * 19 5 4 35 35 H 0.96695 * 117.00034 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1445 0.0000 4 6 3.4758 1.1980 0.0005 5 6 4.2392 0.0364 0.0005 6 7 5.6373 0.1072 0.0005 7 6 6.3594 -0.8285 0.6483 8 8 5.7989 -1.6774 1.3087 9 6 7.8633 -0.8197 0.5521 10 6 8.4335 -1.9783 1.3728 11 6 9.9373 -1.9701 1.2761 12 1 10.4366 -1.2139 0.6884 13 6 10.6761 -2.9273 1.9387 14 7 10.0682 -3.8478 2.6547 15 14 12.5402 -2.9175 1.8183 16 1 12.9746 -1.7878 0.9578 17 1 13.1230 -2.7584 3.1748 18 1 13.0047 -4.1980 1.2270 19 6 3.5971 -1.1960 -0.0049 20 6 2.1975 -1.2132 0.0005 21 6 1.4626 -2.4948 0.0005 22 8 0.2532 -2.5015 -0.1126 23 8 2.1338 -3.6560 0.1258 24 1 -0.3633 -0.1229 -1.0203 25 1 -0.3633 -0.8222 0.6166 26 1 -0.3633 0.9450 0.4038 27 1 3.9692 2.1587 0.0001 28 1 6.0864 0.8296 -0.4656 29 1 8.2467 0.1240 0.9399 30 1 8.1613 -0.9322 -0.4903 31 1 8.1355 -1.8664 2.4153 32 1 8.0500 -2.9219 0.9847 33 1 10.5879 -4.5215 3.1207 34 1 4.1629 -2.1159 -0.0096 35 1 1.6098 -4.4687 0.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607981676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:04 Heat of formation + Delta-G solvation = -124.413165 kcal Electronic energy + Delta-G solvation = -20637.872114 eV Core-core repulsion = 17213.599807 eV Total energy + Delta-G solvation = -3424.272307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27735 -41.16876 -40.16327 -37.34627 -36.39476 -35.56654 -33.78041 -33.34566 -32.41531 -28.91760 -27.37463 -26.32170 -24.32686 -23.63198 -22.36166 -21.29222 -19.60960 -18.84039 -18.80006 -17.83195 -17.45416 -17.16614 -16.99418 -16.87149 -16.42783 -16.23303 -15.33655 -15.11240 -14.48169 -14.42508 -14.32088 -14.17930 -13.70855 -13.45233 -13.25468 -13.16888 -12.85089 -12.62546 -12.45069 -11.93117 -11.92118 -11.68302 -11.64495 -11.29360 -11.13018 -11.00255 -10.56619 -10.53157 -9.39464 -8.17527 -6.30800 -0.68664 -0.08042 1.29124 1.44077 1.44490 1.57658 1.58744 1.86929 1.96578 2.43996 2.57210 3.16535 3.21318 3.46369 3.59461 3.66940 3.98115 4.07564 4.38920 4.50270 4.55880 4.62458 4.68240 4.74977 4.89368 4.99013 5.08659 5.19158 5.47803 5.52543 5.58535 5.64002 5.86490 6.17736 6.35883 6.65702 6.86225 6.88001 7.12752 7.39702 8.95090 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.003438 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.969342 B = 8143.286276 C = 8928.255938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.168 3.832 3 N -0.477 5.477 4 C 0.132 3.868 5 C 0.077 3.923 6 N -0.653 5.653 7 C 0.513 3.487 8 O -0.562 6.562 9 C -0.115 4.115 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.251 1.251 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.036 4.036 20 C -0.181 4.181 21 C 0.537 3.463 22 O -0.518 6.518 23 O -0.510 6.510 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.436 0.564 29 H 0.115 0.885 30 H 0.114 0.886 31 H -0.016 1.016 32 H -0.015 1.015 33 H 0.262 0.738 34 H 0.137 0.863 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 10.715 -9.258 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.030 3.970 3 N -0.186 5.186 4 C -0.028 4.028 5 C -0.021 4.021 6 N -0.302 5.302 7 C 0.304 3.696 8 O -0.438 6.438 9 C -0.155 4.155 10 C 0.001 3.999 11 C -0.578 4.578 12 H 0.097 0.903 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.174 1.174 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.064 4.064 20 C -0.185 4.185 21 C 0.382 3.618 22 O -0.410 6.410 23 O -0.325 6.325 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.225 0.775 28 H 0.278 0.722 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -15.731 11.072 -8.727 21.124 hybrid contribution 1.308 -1.795 0.196 2.229 sum -14.423 9.277 -8.532 19.154 Atomic orbital electron populations 1.21021 0.86115 1.04379 1.04467 1.21742 0.98525 0.86069 0.90703 1.67778 1.09298 1.27406 1.14155 1.23498 0.88733 0.98295 0.92316 1.18879 0.85343 0.94568 1.03275 1.43430 1.02762 1.30510 1.53526 1.21715 0.91482 0.79720 0.76720 1.90712 1.73567 1.38679 1.40877 1.21674 0.87238 1.02559 1.04027 1.18729 0.94748 0.92609 0.93804 1.21746 0.92365 1.13399 1.30267 0.90345 1.26103 1.04414 0.95093 0.94834 1.70175 1.37688 1.16996 1.32889 0.85313 0.78695 0.78467 0.78013 1.17449 1.20889 1.20883 1.21914 0.93322 0.99179 0.92009 1.19899 0.93361 0.92594 1.12610 1.20479 0.84941 0.84457 0.71967 1.90827 1.15116 1.87953 1.47076 1.84615 1.45768 1.17708 1.84363 0.89032 0.89217 0.89477 0.77499 0.72247 0.86716 0.86840 0.99756 0.99699 0.92954 0.84494 0.70236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 8.86 71.24 0.63 -1.41 16 2 C 0.17 4.03 6.82 42.91 0.29 4.33 16 3 N -0.48 -10.70 10.25 -182.33 -1.87 -12.57 16 4 C 0.13 2.52 11.11 84.87 0.94 3.46 16 5 C 0.08 1.86 6.28 38.19 0.24 2.10 16 6 N -0.65 -14.80 5.35 -303.29 -1.62 -16.42 16 7 C 0.51 17.43 7.59 87.66 0.66 18.09 16 8 O -0.56 -25.00 13.75 -3.03 -0.04 -25.04 16 9 C -0.12 -4.05 5.64 29.85 0.17 -3.88 16 10 C 0.04 2.02 4.26 29.85 0.13 2.15 16 11 C -0.54 -29.23 9.11 25.60 0.23 -29.00 16 12 H 0.08 3.83 7.74 -2.91 -0.02 3.80 16 13 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 14 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 15 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 16 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.04 -1.06 8.32 22.86 0.19 -0.87 16 20 C -0.18 -4.85 5.89 -20.02 -0.12 -4.96 16 21 C 0.54 13.81 8.20 70.33 0.58 14.39 16 22 O -0.52 -13.70 14.15 19.94 0.28 -13.42 16 23 O -0.51 -11.78 12.77 -56.16 -0.72 -12.49 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.95 5.86 -2.39 -0.01 1.94 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.44 5.68 8.82 -92.71 -0.82 4.86 16 29 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 31 H -0.02 -0.95 8.10 -2.39 -0.02 -0.97 16 32 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.14 4.72 6.22 -2.91 -0.02 4.70 16 35 H 0.44 5.35 9.11 -74.06 -0.67 4.68 16 Total: -1.00 -79.03 310.86 2.42 -76.61 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.34 Total: 11.58 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.41 Total: 4.47 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -3.21 Total: -86.73 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.48 Total: -50.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.03 2.42 -76.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607981676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.800 kcal (2) G-P(sol) polarization free energy of solvation -79.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds