Wall clock time and date at job start Tue Mar 31 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31677 * 119.72703 * 2 1 4 4 C 1.31932 * 121.89108 * 179.97438 * 3 2 1 5 5 C 1.38370 * 121.09041 * 359.97438 * 4 3 2 6 6 C 1.38333 * 119.31451 * 0.25378 * 5 4 3 7 7 C 1.39596 * 119.71767 * 179.97438 * 2 1 3 8 8 C 1.47723 * 120.56666 * 0.04882 * 7 2 1 9 9 O 1.21588 * 120.00247 * 21.43154 * 8 7 2 10 10 N 1.34776 * 119.99836 * 201.43149 * 8 7 2 11 11 C 1.36875 * 119.99959 * 242.73544 * 10 8 7 12 12 H 1.08003 * 119.99694 * 199.13919 * 11 10 8 13 13 C 1.39046 * 119.99868 * 19.14481 * 11 10 8 14 14 N 1.31361 * 120.00230 * 15.93769 * 13 11 10 15 15 Si 1.86798 * 119.99792 * 195.94315 * 13 11 10 16 16 H 1.48497 * 109.47502 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47254 * 119.99916 * 15 13 11 18 18 H 1.48503 * 109.47174 * 239.99863 * 15 13 11 19 19 C 1.46507 * 120.00120 * 62.74325 * 10 8 7 20 20 C 1.53002 * 109.47223 * 89.99537 * 19 10 8 21 21 C 1.50699 * 109.46880 * 179.97438 * 20 19 10 22 22 O 1.20820 * 119.99946 * 0.02562 * 21 20 19 23 23 O 1.34231 * 119.99872 * 179.97438 * 21 20 19 24 24 H 1.08997 * 109.47528 * 95.78261 * 1 2 3 25 25 H 1.08998 * 109.48041 * 215.78706 * 1 2 3 26 26 H 1.09000 * 109.46915 * 335.78799 * 1 2 3 27 27 H 1.07992 * 119.45535 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.34544 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.86409 * 179.74636 * 6 5 4 30 30 H 0.96997 * 120.00036 * 184.94228 * 14 13 11 31 31 H 1.08996 * 109.46947 * 209.99559 * 19 10 8 32 32 H 1.09001 * 109.46913 * 329.99815 * 19 10 8 33 33 H 1.09000 * 109.46750 * 300.00098 * 20 19 10 34 34 H 1.09001 * 109.46950 * 60.00300 * 20 19 10 35 35 H 0.96696 * 116.99917 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 0.0005 5 6 4.2370 0.0362 0.0016 6 6 3.5998 -1.1916 -0.0032 7 6 2.1990 -1.2124 0.0005 8 6 1.4667 -2.4953 0.0000 9 8 0.3144 -2.5375 -0.3856 10 7 2.0760 -3.6191 0.4270 11 6 2.2680 -4.6638 -0.4363 12 1 2.4616 -5.6540 -0.0511 13 6 2.2138 -4.4501 -1.8092 14 7 2.2933 -3.2293 -2.2875 15 14 2.0279 -5.8991 -2.9733 16 1 1.9618 -7.1586 -2.1894 17 1 0.7809 -5.7418 -3.7643 18 1 3.1938 -5.9490 -3.8918 19 6 2.5327 -3.7226 1.8152 20 6 1.4129 -4.3076 2.6783 21 6 1.8830 -4.4146 4.1060 22 8 2.9989 -4.0591 4.4029 23 8 1.0616 -4.9040 5.0482 24 1 -0.3634 -0.1035 -1.0224 25 1 -0.3635 -0.8336 0.6009 26 1 -0.3633 0.9373 0.4215 27 1 3.9734 2.1530 0.0009 28 1 5.3157 0.0910 0.0016 29 1 4.1674 -2.1104 -0.0066 30 1 2.1837 -3.0729 -3.2385 31 1 3.4058 -4.3734 1.8628 32 1 2.7971 -2.7321 2.1855 33 1 0.5398 -3.6568 2.6305 34 1 1.1485 -5.2981 2.3080 35 1 1.4075 -4.9530 5.9498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607988172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:31 Heat of formation + Delta-G solvation = -75.217660 kcal Electronic energy + Delta-G solvation = -22001.283531 eV Core-core repulsion = 18579.144501 eV Total energy + Delta-G solvation = -3422.139030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12679 -39.79419 -38.03856 -36.05799 -34.93324 -32.44776 -32.28402 -31.55586 -30.05440 -27.21720 -25.31555 -24.40311 -23.03612 -21.43253 -20.83923 -19.65254 -17.97207 -17.29121 -16.48679 -16.01748 -15.83982 -15.55561 -15.24724 -14.94340 -14.25419 -13.89592 -13.66685 -13.35480 -13.02774 -12.85478 -12.42847 -12.15402 -11.85364 -11.77851 -11.54921 -11.46736 -11.39247 -11.17585 -11.02849 -10.69364 -10.56595 -10.39753 -10.22894 -9.22204 -9.11198 -9.07690 -8.49925 -8.25205 -7.55905 -6.28920 -3.73467 1.46908 1.90186 2.40000 3.18650 3.21481 3.31523 3.33418 3.75028 4.21820 4.52968 4.74889 4.92331 5.11510 5.30442 5.37319 5.43258 5.53029 5.65062 5.74374 5.83341 5.97238 6.09743 6.16531 6.29834 6.30858 6.37351 6.51599 6.65514 6.66865 6.80319 6.93271 7.29415 7.44852 7.95559 8.05398 8.51160 8.85466 9.11496 9.36812 9.83664 10.83716 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.009241 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.070384 B = 3029.140838 C = 4775.916982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.155 3.845 3 N -0.501 5.501 4 C 0.098 3.902 5 C -0.199 4.199 6 C -0.011 4.011 7 C -0.143 4.143 8 C 0.625 3.375 9 O -0.511 6.511 10 N -0.546 5.546 11 C -0.296 4.296 12 H 0.087 0.913 13 C 0.029 3.971 14 N -0.879 5.879 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.286 1.286 19 C 0.146 3.854 20 C -0.133 4.133 21 C 0.483 3.517 22 O -0.521 6.521 23 O -0.521 6.521 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.147 0.853 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.270 0.730 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 1.903 8.534 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.017 3.983 3 N -0.211 5.211 4 C -0.059 4.059 5 C -0.219 4.219 6 C -0.037 4.037 7 C -0.149 4.149 8 C 0.416 3.584 9 O -0.386 6.386 10 N -0.274 5.274 11 C -0.423 4.423 12 H 0.105 0.895 13 C -0.174 4.174 14 N -0.519 5.519 15 Si 0.746 3.254 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.212 1.212 19 C 0.020 3.980 20 C -0.173 4.173 21 C 0.326 3.674 22 O -0.409 6.409 23 O -0.333 6.333 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.331 2.851 7.778 8.290 hybrid contribution 0.917 -1.496 -0.300 1.780 sum 1.248 1.355 7.477 7.701 Atomic orbital electron populations 1.20723 0.88589 1.01957 1.03676 1.21439 0.97042 0.87331 0.92526 1.67440 1.09855 1.29247 1.14568 1.22622 0.89650 0.98003 0.95645 1.21994 1.00940 0.93645 1.05322 1.21764 0.93791 0.98139 0.90055 1.21402 0.94810 0.95964 1.02714 1.17147 0.84050 0.82322 0.74861 1.90504 1.17819 1.86250 1.43985 1.42488 1.61583 1.15713 1.07629 1.19256 1.48155 0.88430 0.86428 0.89504 1.25069 0.97581 0.97285 0.97505 1.69390 1.48106 1.19838 1.14611 0.86008 0.77717 0.81281 0.80375 1.19699 1.20923 1.21244 1.20780 0.93990 1.00292 0.82949 1.22097 1.02946 1.06046 0.86215 1.23822 0.82730 0.72216 0.88634 1.90693 1.21432 1.46024 1.82746 1.84601 1.48756 1.77720 1.22196 0.90217 0.89836 0.92226 0.83559 0.85433 0.84259 0.91918 0.90699 0.92330 0.88056 0.87083 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 8.76 36.00 0.32 -1.44 16 2 C 0.15 3.22 6.82 -82.15 -0.56 2.66 16 3 N -0.50 -9.68 10.26 -9.13 -0.09 -9.77 16 4 C 0.10 1.64 11.17 -17.46 -0.20 1.44 16 5 C -0.20 -3.35 10.10 -39.50 -0.40 -3.75 16 6 C -0.01 -0.23 9.14 -38.85 -0.36 -0.58 16 7 C -0.14 -3.15 5.18 -104.82 -0.54 -3.69 16 8 C 0.63 15.08 3.61 -12.38 -0.04 15.04 16 9 O -0.51 -13.49 14.41 5.29 0.08 -13.42 16 10 N -0.55 -12.54 2.04 -115.92 -0.24 -12.77 16 11 C -0.30 -7.38 9.61 -15.00 -0.14 -7.52 16 12 H 0.09 2.05 7.88 -52.48 -0.41 1.64 16 13 C 0.03 0.74 5.12 -17.45 -0.09 0.65 16 14 N -0.88 -23.93 11.11 55.50 0.62 -23.31 16 15 Si 0.92 20.68 29.59 -169.99 -5.03 15.65 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.15 2.74 4.62 -4.04 -0.02 2.72 16 20 C -0.13 -2.14 6.14 -27.88 -0.17 -2.31 16 21 C 0.48 7.10 8.33 36.00 0.30 7.40 16 22 O -0.52 -8.89 16.74 -18.75 -0.31 -9.21 16 23 O -0.52 -6.07 13.42 -39.26 -0.53 -6.59 16 24 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.08 1.63 6.30 -51.93 -0.33 1.30 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.14 2.89 7.81 -52.49 -0.41 2.48 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 32 H 0.06 1.09 7.30 -51.93 -0.38 0.71 16 33 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 35 H 0.40 2.79 9.10 45.56 0.41 3.21 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -31.70 310.90 -5.93 -37.63 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.20 Total: 6.49 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -1.91 Total: 10.62 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.29 Total: -45.86 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.76 Total: -29.22 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.70 -5.93 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607988172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.587 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds