Wall clock time and date at job start Tue Mar 31 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31677 * 119.72703 * 2 1 4 4 C 1.31932 * 121.89108 * 179.97438 * 3 2 1 5 5 C 1.38370 * 121.09041 * 359.97438 * 4 3 2 6 6 C 1.38333 * 119.31451 * 0.25378 * 5 4 3 7 7 C 1.39596 * 119.71767 * 179.97438 * 2 1 3 8 8 C 1.47723 * 120.56666 * 0.04882 * 7 2 1 9 9 O 1.21588 * 120.00247 * 21.43154 * 8 7 2 10 10 N 1.34776 * 119.99836 * 201.43149 * 8 7 2 11 11 C 1.36875 * 119.99959 * 242.73544 * 10 8 7 12 12 H 1.08003 * 119.99694 * 199.13919 * 11 10 8 13 13 C 1.39046 * 119.99868 * 19.14481 * 11 10 8 14 14 N 1.31361 * 120.00230 * 15.93769 * 13 11 10 15 15 Si 1.86798 * 119.99792 * 195.94315 * 13 11 10 16 16 H 1.48497 * 109.47502 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47254 * 119.99916 * 15 13 11 18 18 H 1.48503 * 109.47174 * 239.99863 * 15 13 11 19 19 C 1.46507 * 120.00120 * 62.74325 * 10 8 7 20 20 C 1.53002 * 109.47223 * 89.99537 * 19 10 8 21 21 C 1.50699 * 109.46880 * 179.97438 * 20 19 10 22 22 O 1.20820 * 119.99946 * 0.02562 * 21 20 19 23 23 O 1.34231 * 119.99872 * 179.97438 * 21 20 19 24 24 H 1.08997 * 109.47528 * 95.78261 * 1 2 3 25 25 H 1.08998 * 109.48041 * 215.78706 * 1 2 3 26 26 H 1.09000 * 109.46915 * 335.78799 * 1 2 3 27 27 H 1.07992 * 119.45535 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.34544 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.86409 * 179.74636 * 6 5 4 30 30 H 0.96997 * 120.00036 * 184.94228 * 14 13 11 31 31 H 1.08996 * 109.46947 * 209.99559 * 19 10 8 32 32 H 1.09001 * 109.46913 * 329.99815 * 19 10 8 33 33 H 1.09000 * 109.46750 * 300.00098 * 20 19 10 34 34 H 1.09001 * 109.46950 * 60.00300 * 20 19 10 35 35 H 0.96696 * 116.99917 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 0.0005 5 6 4.2370 0.0362 0.0016 6 6 3.5998 -1.1916 -0.0032 7 6 2.1990 -1.2124 0.0005 8 6 1.4667 -2.4953 0.0000 9 8 0.3144 -2.5375 -0.3856 10 7 2.0760 -3.6191 0.4270 11 6 2.2680 -4.6638 -0.4363 12 1 2.4616 -5.6540 -0.0511 13 6 2.2138 -4.4501 -1.8092 14 7 2.2933 -3.2293 -2.2875 15 14 2.0279 -5.8991 -2.9733 16 1 1.9618 -7.1586 -2.1894 17 1 0.7809 -5.7418 -3.7643 18 1 3.1938 -5.9490 -3.8918 19 6 2.5327 -3.7226 1.8152 20 6 1.4129 -4.3076 2.6783 21 6 1.8830 -4.4146 4.1060 22 8 2.9989 -4.0591 4.4029 23 8 1.0616 -4.9040 5.0482 24 1 -0.3634 -0.1035 -1.0224 25 1 -0.3635 -0.8336 0.6009 26 1 -0.3633 0.9373 0.4215 27 1 3.9734 2.1530 0.0009 28 1 5.3157 0.0910 0.0016 29 1 4.1674 -2.1104 -0.0066 30 1 2.1837 -3.0729 -3.2385 31 1 3.4058 -4.3734 1.8628 32 1 2.7971 -2.7321 2.1855 33 1 0.5398 -3.6568 2.6305 34 1 1.1485 -5.2981 2.3080 35 1 1.4075 -4.9530 5.9498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607988172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:29 Heat of formation + Delta-G solvation = -96.161261 kcal Electronic energy + Delta-G solvation = -22002.191713 eV Core-core repulsion = 18579.144501 eV Total energy + Delta-G solvation = -3423.047212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54151 -41.14147 -39.70959 -37.22508 -36.63401 -34.21163 -33.78221 -33.09591 -31.64917 -28.74277 -27.08435 -25.90836 -24.57936 -22.95498 -22.15910 -21.32356 -19.20764 -18.96729 -17.87674 -17.49756 -17.08558 -17.04682 -16.84782 -16.68566 -15.96375 -15.54197 -15.24033 -14.74265 -14.45265 -14.19803 -13.96340 -13.70786 -13.48024 -13.31804 -13.18790 -13.02455 -12.84793 -12.76971 -12.52582 -12.43055 -12.19349 -11.98709 -11.64857 -11.04925 -10.72996 -10.60128 -10.22313 -9.76265 -9.39673 -8.22772 -5.68556 -0.04568 0.39781 1.21320 1.41344 1.47272 1.56050 1.95502 2.10451 2.45536 2.96996 3.13186 3.24496 3.48394 3.93072 3.97386 4.02579 4.08869 4.27911 4.29008 4.49128 4.63030 4.67210 4.73418 4.77988 4.83064 4.86725 5.08768 5.18226 5.32226 5.41195 5.49577 5.61846 5.83782 6.05762 6.93885 7.02962 7.04956 7.27306 7.55838 7.97118 8.88080 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.009241 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.070384 B = 3029.140838 C = 4775.916982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.139 3.861 3 N -0.510 5.510 4 C 0.107 3.893 5 C -0.187 4.187 6 C -0.023 4.023 7 C -0.172 4.172 8 C 0.625 3.375 9 O -0.549 6.549 10 N -0.558 5.558 11 C -0.298 4.298 12 H 0.097 0.903 13 C -0.023 4.023 14 N -0.907 5.907 15 Si 0.976 3.024 16 H -0.256 1.256 17 H -0.298 1.298 18 H -0.285 1.285 19 C 0.149 3.851 20 C -0.128 4.128 21 C 0.499 3.501 22 O -0.546 6.546 23 O -0.511 6.511 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.195 0.805 28 H 0.168 0.832 29 H 0.126 0.874 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 2.386 9.686 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 N -0.220 5.220 4 C -0.050 4.050 5 C -0.207 4.207 6 C -0.049 4.049 7 C -0.178 4.178 8 C 0.419 3.581 9 O -0.426 6.426 10 N -0.286 5.286 11 C -0.425 4.425 12 H 0.115 0.885 13 C -0.222 4.222 14 N -0.550 5.550 15 Si 0.803 3.197 16 H -0.180 1.180 17 H -0.225 1.225 18 H -0.211 1.211 19 C 0.024 3.976 20 C -0.167 4.167 21 C 0.342 3.658 22 O -0.436 6.436 23 O -0.324 6.324 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.212 0.788 28 H 0.186 0.814 29 H 0.144 0.856 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.412 3.304 8.995 9.686 hybrid contribution 0.633 -1.587 -0.535 1.790 sum 2.044 1.717 8.460 8.871 Atomic orbital electron populations 1.20619 0.88159 1.02710 1.02664 1.21608 0.97723 0.87506 0.92997 1.67526 1.11313 1.28249 1.14909 1.23445 0.88795 0.99972 0.92829 1.22396 1.02981 0.92155 1.03125 1.21789 0.93097 0.99231 0.90831 1.21318 0.95732 0.95386 1.05353 1.17564 0.83698 0.83368 0.73519 1.90466 1.19494 1.87058 1.45621 1.42610 1.61794 1.15354 1.08887 1.19594 1.46782 0.89303 0.86810 0.88542 1.25834 0.98134 0.99235 0.99042 1.69539 1.50071 1.21402 1.13959 0.85108 0.76691 0.79427 0.78521 1.18012 1.22508 1.21092 1.20828 0.94965 1.00539 0.81273 1.21842 1.01668 1.05923 0.87288 1.23260 0.82257 0.71801 0.88461 1.90696 1.22482 1.47337 1.83128 1.84523 1.47857 1.76656 1.23414 0.91706 0.91052 0.89739 0.78812 0.81436 0.85644 0.92980 0.90571 0.92368 0.88255 0.86734 0.71047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.26 8.76 71.23 0.62 -2.64 16 2 C 0.14 5.78 6.82 42.91 0.29 6.07 16 3 N -0.51 -18.75 10.26 -182.79 -1.88 -20.63 16 4 C 0.11 3.20 11.17 84.71 0.95 4.15 16 5 C -0.19 -5.78 10.10 22.32 0.23 -5.56 16 6 C -0.02 -0.92 9.14 22.74 0.21 -0.72 16 7 C -0.17 -7.68 5.18 -19.99 -0.10 -7.78 16 8 C 0.63 31.05 3.61 86.75 0.31 31.36 16 9 O -0.55 -30.17 14.41 -3.99 -0.06 -30.22 16 10 N -0.56 -26.09 2.04 -638.93 -1.30 -27.39 16 11 C -0.30 -14.98 9.61 84.10 0.81 -14.17 16 12 H 0.10 4.53 7.88 -2.91 -0.02 4.51 16 13 C -0.02 -1.23 5.12 84.96 0.44 -0.79 16 14 N -0.91 -50.78 11.11 21.68 0.24 -50.54 16 15 Si 0.98 43.04 29.59 68.60 2.03 45.07 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 C 0.15 5.61 4.62 86.38 0.40 6.01 16 20 C -0.13 -4.05 6.14 29.85 0.18 -3.86 16 21 C 0.50 13.91 8.33 71.24 0.59 14.51 16 22 O -0.55 -17.94 16.74 21.98 0.37 -17.57 16 23 O -0.51 -10.63 13.42 -51.43 -0.69 -11.32 16 24 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.07 2.90 6.30 -2.39 -0.02 2.88 16 26 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.20 3.92 8.06 -2.91 -0.02 3.89 16 28 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.13 5.27 7.81 -2.91 -0.02 5.25 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.08 2.82 8.00 -2.39 -0.02 2.80 16 32 H 0.06 2.18 7.30 -2.39 -0.02 2.16 16 33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.43 4.64 9.10 -74.06 -0.67 3.97 16 Total: -1.00 -69.59 310.90 4.09 -65.50 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.45 Total: 20.51 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 4.93 Total: 26.59 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.94 Total: -98.56 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.38 Total: -59.11 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.59 4.09 -65.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607988172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.660 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds