Wall clock time and date at job start Tue Mar 31 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38623 * 119.54435 * 94.72955 * 14 13 12 16 16 C 1.38582 * 119.35211 * 179.79174 * 15 14 13 17 17 C 1.38631 * 118.49486 * 0.47225 * 16 15 14 18 18 C 1.39313 * 119.05443 * 359.74750 * 17 16 15 19 19 C 1.48066 * 119.72319 * 179.97438 * 18 17 16 20 20 O 1.21426 * 120.00441 * 0.02562 * 19 18 17 21 21 O 1.34685 * 119.99260 * 180.02562 * 19 18 17 22 22 N 1.31476 * 119.54537 * 274.99914 * 14 13 12 23 23 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 26 26 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 27 27 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 28 28 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 29 29 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 30 30 H 1.08002 * 120.32712 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.75444 * 180.24079 * 16 15 14 32 32 H 1.07998 * 120.47639 * 179.73180 * 17 16 15 33 33 H 0.96701 * 116.99255 * 179.97438 * 21 19 18 34 34 H 1.08999 * 113.76060 * 220.99233 * 23 12 11 35 35 H 1.09003 * 113.75638 * 89.62817 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.3940 -6.6036 3.1981 16 6 -0.4907 -6.9237 4.2156 17 6 -0.7757 -5.9609 5.1715 18 6 -0.1618 -4.7137 5.0795 19 6 -0.4559 -3.6742 6.0921 20 8 -1.2289 -3.9106 6.9982 21 8 0.1341 -2.4664 6.0080 22 7 0.6839 -4.4491 4.0906 23 6 2.1616 -3.7403 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3760 -1.7802 -0.9686 26 1 1.3962 -2.5374 2.2102 27 1 -0.2739 -2.8571 1.5667 28 1 2.3964 -5.9035 1.6843 29 1 2.7125 -4.3337 2.4616 30 1 0.6335 -7.3297 2.4353 31 1 -0.9507 -7.8998 4.2608 32 1 -1.4638 -6.1745 5.9759 33 1 -0.0894 -1.8202 6.6919 34 1 2.1778 -4.2727 -0.9521 35 1 3.1577 -3.5544 0.4006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:47 Heat of formation + Delta-G solvation = -60.096498 kcal Electronic energy + Delta-G solvation = -21443.796966 eV Core-core repulsion = 18022.313640 eV Total energy + Delta-G solvation = -3421.483327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80833 -39.61391 -38.66383 -36.13381 -34.46256 -32.69025 -32.26481 -31.97582 -28.53241 -26.01739 -25.40565 -24.98321 -23.26617 -21.98736 -20.83145 -18.59541 -18.34621 -17.45596 -17.17225 -16.33664 -15.87826 -15.80458 -15.17118 -15.05166 -14.47842 -14.21640 -13.91197 -13.47457 -13.37369 -13.25195 -12.42046 -12.32578 -11.95687 -11.74803 -11.55904 -11.37521 -11.07676 -10.94889 -10.74263 -10.68504 -10.34736 -10.02719 -9.99956 -9.50672 -9.43399 -9.05151 -8.58837 -8.18480 -7.80417 -6.21565 -4.30950 0.47679 1.15171 2.38003 2.85300 3.24690 3.29605 3.32055 3.73283 4.13043 4.29800 4.61256 4.88129 4.89103 4.92285 4.96223 5.07052 5.39977 5.47505 5.58858 5.87914 5.95396 5.97015 5.99419 6.13817 6.34884 6.36838 6.48449 6.54980 6.69700 7.14043 7.15350 7.40826 7.67083 7.80869 7.94718 7.99422 8.04424 8.69750 9.38573 9.68274 10.84519 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.005478 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.519730 B = 5109.744624 C = 6178.187164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.242 3.758 10 O -0.574 6.574 11 C -0.001 4.001 12 N -0.477 5.477 13 C 0.064 3.936 14 C 0.147 3.853 15 C -0.121 4.121 16 C -0.087 4.087 17 C -0.114 4.114 18 C 0.087 3.913 19 C 0.547 3.453 20 O -0.516 6.516 21 O -0.485 6.485 22 N -0.421 5.421 23 C 0.010 3.990 24 H 0.271 0.729 25 H 0.389 0.611 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.411 0.589 34 H 0.077 0.923 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -10.649 9.336 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.201 3.799 10 O -0.386 6.386 11 C -0.130 4.130 12 N -0.201 5.201 13 C -0.065 4.065 14 C 0.006 3.994 15 C -0.142 4.142 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.050 4.050 19 C 0.389 3.611 20 O -0.405 6.405 21 O -0.294 6.294 22 N -0.133 5.133 23 C -0.118 4.118 24 H 0.081 0.919 25 H 0.244 0.756 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.572 -11.069 8.924 14.230 hybrid contribution 0.172 1.521 1.134 1.905 sum 0.744 -9.549 10.058 13.889 Atomic orbital electron populations 1.69339 1.06126 1.27832 1.50555 1.25042 0.94950 0.99607 0.93415 0.86475 0.79560 0.82137 0.78790 1.21070 1.20027 1.20005 1.21591 0.93592 0.90713 1.51571 0.91721 1.19774 0.85161 0.90717 0.84279 1.86022 1.45221 1.50261 1.57055 1.24672 1.00574 0.86413 1.01342 1.68703 1.25962 1.17437 1.07965 1.21610 0.93602 1.00863 0.90443 1.21320 0.95721 0.89078 0.93326 1.22318 0.95813 0.97870 0.98157 1.21565 0.96658 0.99653 0.93353 1.22013 0.99106 0.92357 0.99984 1.19914 0.98391 0.91990 0.94708 1.20543 0.76506 0.81392 0.82613 1.90873 1.34532 1.80926 1.34128 1.84761 1.66071 1.23466 1.55133 1.67519 1.11454 1.33738 1.00583 1.24162 0.95100 0.96625 0.95929 0.91890 0.75610 0.91190 0.91695 0.89686 0.92286 0.83802 0.83748 0.83526 0.73057 0.90485 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 11.09 55.43 0.61 -23.88 16 2 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.41 8.62 -34.44 -0.30 -14.71 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 6.17 1.44 -90.84 -0.13 6.04 16 10 O -0.57 -15.67 13.48 -35.23 -0.47 -16.14 16 11 C 0.00 -0.02 6.50 -2.77 -0.02 -0.04 16 12 N -0.48 -9.81 6.25 -239.69 -1.50 -11.31 16 13 C 0.06 1.05 5.13 -4.97 -0.03 1.03 16 14 C 0.15 2.32 5.96 -82.60 -0.49 1.83 16 15 C -0.12 -1.49 9.73 -39.31 -0.38 -1.88 16 16 C -0.09 -0.92 10.17 -39.31 -0.40 -1.32 16 17 C -0.11 -1.41 9.63 -39.04 -0.38 -1.79 16 18 C 0.09 1.34 6.75 -83.03 -0.56 0.78 16 19 C 0.55 8.26 8.32 34.76 0.29 8.55 16 20 O -0.52 -8.15 17.11 -19.21 -0.33 -8.48 16 21 O -0.49 -6.74 13.24 -40.45 -0.54 -7.28 16 22 N -0.42 -7.30 9.56 -6.07 -0.06 -7.36 16 23 C 0.01 0.22 7.36 -2.77 -0.02 0.20 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.39 10.85 6.46 45.56 0.29 11.14 16 26 H 0.07 1.72 7.73 -51.93 -0.40 1.31 16 27 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 29 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 33 H 0.41 3.43 9.11 45.56 0.42 3.85 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.07 1.33 7.74 -51.93 -0.40 0.92 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -31.98 309.54 -7.70 -39.67 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -2.55 Total: 13.99 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.51 Total: 0.50 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.94 Total: -42.54 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.34 Total: -31.90 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.98 -7.70 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.423 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds