Wall clock time and date at job start Tue Mar 31 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47150 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.47349 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.47437 * 149.99659 * 3 2 1 7 7 C 1.37874 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00064 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64262 * 298.29565 * 9 7 2 11 11 C 1.54590 * 110.72438 * 61.44875 * 9 7 2 12 12 C 1.53995 * 105.13825 * 140.49577 * 11 9 7 13 13 N 1.47897 * 107.05985 * 1.22223 * 12 11 9 14 14 C 1.39021 * 111.00030 * 214.15848 * 13 12 11 15 15 C 1.39121 * 119.64787 * 59.87330 * 14 13 12 16 16 C 1.39533 * 118.92857 * 179.97438 * 15 14 13 17 17 C 1.48061 * 120.89130 * 179.97438 * 16 15 14 18 18 O 1.21433 * 119.99935 * 0.02562 * 17 16 15 19 19 O 1.34670 * 120.00493 * 180.02562 * 17 16 15 20 20 C 1.40065 * 118.22546 * 0.02562 * 16 15 14 21 21 C 1.37940 * 119.16762 * 359.97438 * 20 16 15 22 22 N 1.31912 * 121.01293 * 0.02562 * 21 20 16 23 23 C 1.48530 * 105.81933 * 334.67365 * 13 12 11 24 24 H 0.96996 * 120.00384 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99646 * 61.69654 * 10 9 7 26 26 H 1.08996 * 110.31006 * 21.57749 * 11 9 7 27 27 H 1.08999 * 110.39455 * 259.45281 * 11 9 7 28 28 H 1.09005 * 109.91729 * 241.86810 * 12 11 9 29 29 H 1.08996 * 110.08122 * 120.67098 * 12 11 9 30 30 H 1.08009 * 120.53408 * 359.97438 * 15 14 13 31 31 H 0.96696 * 117.00177 * 179.97438 * 19 17 16 32 32 H 1.07998 * 120.41279 * 179.72635 * 20 16 15 33 33 H 1.08005 * 119.49395 * 180.02562 * 21 20 16 34 34 H 1.09002 * 110.66889 * 157.64484 * 23 13 12 35 35 H 1.09006 * 110.66710 * 280.77079 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4498 -2.6183 1.1777 11 6 0.3796 -2.6277 -1.2698 12 6 0.5040 -4.1025 -1.6953 13 7 1.3715 -4.7694 -0.7004 14 6 2.1472 -5.7564 -1.2978 15 6 3.0319 -5.4144 -2.3155 16 6 3.8035 -6.4169 -2.9043 17 6 4.7583 -6.1017 -3.9911 18 8 4.8782 -4.9580 -4.3813 19 8 5.4938 -7.0833 -4.5470 20 6 3.6500 -7.7295 -2.4404 21 6 2.7498 -7.9832 -1.4264 22 7 2.0361 -7.0110 -0.8922 23 6 2.2241 -3.6984 -0.1240 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2284 -1.9342 1.2627 26 1 0.7577 -1.9741 -2.0558 27 1 -0.6589 -2.3854 -1.0442 28 1 0.9565 -4.1666 -2.6849 29 1 -0.4791 -4.5732 -1.7056 30 1 3.1200 -4.3894 -2.6446 31 1 6.1032 -6.8290 -5.2535 32 1 4.2262 -8.5335 -2.8739 33 1 2.6275 -8.9934 -1.0644 34 1 2.6005 -3.9919 0.8560 35 1 3.0471 -3.4578 -0.7970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:40 Heat of formation + Delta-G solvation = -80.998669 kcal Electronic energy + Delta-G solvation = -21585.438034 eV Core-core repulsion = 18163.048321 eV Total energy + Delta-G solvation = -3422.389713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98338 -39.88310 -38.08106 -36.37628 -34.89666 -32.85534 -32.14595 -31.11634 -28.42157 -28.14409 -25.54622 -24.87393 -23.22750 -21.57093 -20.52274 -19.62798 -18.40638 -17.83587 -17.00462 -16.24999 -15.91905 -15.88681 -15.56887 -14.92972 -14.68384 -14.35539 -13.96210 -13.78513 -13.51430 -12.90434 -12.57531 -12.09313 -11.97665 -11.87587 -11.68189 -11.33681 -11.10036 -11.05108 -10.77406 -10.55739 -10.44111 -10.06360 -10.01240 -9.67928 -9.31291 -8.88769 -8.62178 -8.17200 -7.98117 -6.23989 -4.32641 0.44862 0.95963 2.38797 2.63592 3.21755 3.29329 3.33100 3.67295 3.80479 4.29740 4.50392 4.79257 4.86571 4.91149 5.02750 5.16589 5.48535 5.62302 5.67384 5.78295 5.84827 5.88539 6.02860 6.14864 6.27816 6.34083 6.50924 6.75418 6.92180 7.18858 7.39468 7.41062 7.48201 7.58689 7.77441 8.09971 8.15780 8.69800 9.36536 9.52052 10.83202 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.005070 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.528547 B = 5521.617376 C = 6419.094495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.261 3.739 10 O -0.578 6.578 11 C -0.129 4.129 12 C 0.044 3.956 13 N -0.476 5.476 14 C 0.316 3.684 15 C -0.139 4.139 16 C -0.074 4.074 17 C 0.527 3.473 18 O -0.500 6.500 19 O -0.510 6.510 20 C -0.137 4.137 21 C 0.102 3.898 22 N -0.444 5.444 23 C 0.060 3.940 24 H 0.268 0.732 25 H 0.379 0.621 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.416 0.584 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -13.440 -7.741 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.220 3.780 10 O -0.386 6.386 11 C -0.168 4.168 12 C -0.083 4.083 13 N -0.199 5.199 14 C 0.085 3.915 15 C -0.162 4.162 16 C -0.084 4.084 17 C 0.370 3.630 18 O -0.387 6.387 19 O -0.322 6.322 20 C -0.157 4.157 21 C -0.056 4.056 22 N -0.154 5.154 23 C -0.066 4.066 24 H 0.077 0.923 25 H 0.228 0.772 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.275 0.725 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.645 -14.081 -6.365 16.451 hybrid contribution 1.595 2.094 -2.016 3.315 sum 7.240 -11.987 -8.380 16.320 Atomic orbital electron populations 1.69723 1.05915 1.27559 1.50005 1.24976 0.94986 0.99413 0.93589 0.86465 0.79925 0.82663 0.78203 1.20528 1.20995 1.19739 1.21548 0.93614 0.90512 1.52123 0.91978 1.19281 0.86544 0.89967 0.82202 1.86157 1.51520 1.56199 1.44699 1.22986 1.02538 0.90597 1.00675 1.23094 0.96470 0.96968 0.91732 1.61803 1.18388 1.10286 1.29417 1.20119 0.90886 0.91031 0.89418 1.23013 0.95486 1.01181 0.96562 1.19280 0.97600 0.95014 0.96474 1.20870 0.78752 0.82459 0.80922 1.90936 1.65038 1.21897 1.60829 1.84526 1.53301 1.41530 1.52852 1.22396 0.99413 0.96059 0.97846 1.22758 0.91567 0.98533 0.92706 1.67289 1.21891 0.99940 1.26321 1.23423 0.94669 0.89622 0.98887 0.92250 0.77161 0.91467 0.90803 0.94563 0.90911 0.83053 0.72521 0.83404 0.81661 0.90158 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.43 11.00 55.43 0.61 -22.82 16 2 C 0.07 1.91 5.28 -17.82 -0.09 1.81 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.23 8.15 -34.44 -0.28 -14.51 16 8 H 0.06 1.63 7.78 -52.49 -0.41 1.22 16 9 C 0.26 6.41 0.95 -89.91 -0.09 6.32 16 10 O -0.58 -15.10 13.09 -35.23 -0.46 -15.56 16 11 C -0.13 -2.92 5.26 -25.38 -0.13 -3.05 16 12 C 0.04 0.86 6.50 -2.76 -0.02 0.84 16 13 N -0.48 -9.73 5.36 -169.26 -0.91 -10.64 16 14 C 0.32 5.65 5.85 -155.07 -0.91 4.74 16 15 C -0.14 -2.25 7.45 -38.77 -0.29 -2.54 16 16 C -0.07 -1.00 5.90 -104.70 -0.62 -1.62 16 17 C 0.53 6.63 8.30 34.76 0.29 6.92 16 18 O -0.50 -7.92 17.23 -19.21 -0.33 -8.25 16 19 O -0.51 -4.27 12.78 -40.41 -0.52 -4.79 16 20 C -0.14 -1.49 9.70 -39.01 -0.38 -1.87 16 21 C 0.10 1.22 11.16 -17.63 -0.20 1.03 16 22 N -0.44 -7.35 10.37 -12.49 -0.13 -7.48 16 23 C 0.06 1.31 5.54 -1.90 -0.01 1.30 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.38 9.90 7.46 45.56 0.34 10.24 16 26 H 0.07 1.57 7.84 -51.93 -0.41 1.16 16 27 H 0.07 1.74 7.98 -51.93 -0.41 1.33 16 28 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.15 2.60 6.72 -52.48 -0.35 2.25 16 31 H 0.42 1.58 9.11 45.56 0.42 2.00 16 32 H 0.15 1.14 7.71 -52.49 -0.40 0.74 16 33 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.05 1.14 6.52 -51.93 -0.34 0.80 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -30.98 301.15 -7.26 -38.24 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.32 Total: 11.93 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.72 Total: -0.62 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.43 Total: -40.94 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.31 Total: -28.60 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.98 -7.26 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.757 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds