Wall clock time and date at job start Tue Mar 31 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47150 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.47349 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.47437 * 149.99659 * 3 2 1 7 7 C 1.37874 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00064 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64262 * 298.29565 * 9 7 2 11 11 C 1.54590 * 110.72438 * 61.44875 * 9 7 2 12 12 C 1.53995 * 105.13825 * 140.49577 * 11 9 7 13 13 N 1.47897 * 107.05985 * 1.22223 * 12 11 9 14 14 C 1.39021 * 111.00030 * 214.15848 * 13 12 11 15 15 C 1.39121 * 119.64787 * 59.87330 * 14 13 12 16 16 C 1.39533 * 118.92857 * 179.97438 * 15 14 13 17 17 C 1.48061 * 120.89130 * 179.97438 * 16 15 14 18 18 O 1.21433 * 119.99935 * 0.02562 * 17 16 15 19 19 O 1.34670 * 120.00493 * 180.02562 * 17 16 15 20 20 C 1.40065 * 118.22546 * 0.02562 * 16 15 14 21 21 C 1.37940 * 119.16762 * 359.97438 * 20 16 15 22 22 N 1.31912 * 121.01293 * 0.02562 * 21 20 16 23 23 C 1.48530 * 105.81933 * 334.67365 * 13 12 11 24 24 H 0.96996 * 120.00384 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99646 * 61.69654 * 10 9 7 26 26 H 1.08996 * 110.31006 * 21.57749 * 11 9 7 27 27 H 1.08999 * 110.39455 * 259.45281 * 11 9 7 28 28 H 1.09005 * 109.91729 * 241.86810 * 12 11 9 29 29 H 1.08996 * 110.08122 * 120.67098 * 12 11 9 30 30 H 1.08009 * 120.53408 * 359.97438 * 15 14 13 31 31 H 0.96696 * 117.00177 * 179.97438 * 19 17 16 32 32 H 1.07998 * 120.41279 * 179.72635 * 20 16 15 33 33 H 1.08005 * 119.49395 * 180.02562 * 21 20 16 34 34 H 1.09002 * 110.66889 * 157.64484 * 23 13 12 35 35 H 1.09006 * 110.66710 * 280.77079 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4498 -2.6183 1.1777 11 6 0.3796 -2.6277 -1.2698 12 6 0.5040 -4.1025 -1.6953 13 7 1.3715 -4.7694 -0.7004 14 6 2.1472 -5.7564 -1.2978 15 6 3.0319 -5.4144 -2.3155 16 6 3.8035 -6.4169 -2.9043 17 6 4.7583 -6.1017 -3.9911 18 8 4.8782 -4.9580 -4.3813 19 8 5.4938 -7.0833 -4.5470 20 6 3.6500 -7.7295 -2.4404 21 6 2.7498 -7.9832 -1.4264 22 7 2.0361 -7.0110 -0.8922 23 6 2.2241 -3.6984 -0.1240 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2284 -1.9342 1.2627 26 1 0.7577 -1.9741 -2.0558 27 1 -0.6589 -2.3854 -1.0442 28 1 0.9565 -4.1666 -2.6849 29 1 -0.4791 -4.5732 -1.7056 30 1 3.1200 -4.3894 -2.6446 31 1 6.1032 -6.8290 -5.2535 32 1 4.2262 -8.5335 -2.8739 33 1 2.6275 -8.9934 -1.0644 34 1 2.6005 -3.9919 0.8560 35 1 3.0471 -3.4578 -0.7970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:40 Heat of formation + Delta-G solvation = -105.681341 kcal Electronic energy + Delta-G solvation = -21586.508355 eV Core-core repulsion = 18163.048321 eV Total energy + Delta-G solvation = -3423.460034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10852 -40.99353 -39.60405 -37.24843 -36.66582 -34.18670 -33.96147 -32.57478 -29.98446 -29.85544 -26.76521 -26.54919 -24.50739 -22.71792 -21.91420 -21.50895 -19.49882 -19.14654 -18.56173 -17.46988 -17.31085 -16.88123 -16.86167 -16.73007 -16.24744 -15.60040 -15.39970 -15.30649 -14.57830 -14.43374 -14.28914 -13.79741 -13.48739 -13.25966 -13.07143 -12.87539 -12.73561 -12.57460 -12.43252 -12.25959 -12.08601 -11.86642 -11.23054 -11.14221 -10.90657 -10.63313 -10.15258 -10.03123 -9.51492 -8.23381 -6.39385 -0.59610 -0.13617 1.39121 1.40144 1.42553 1.51892 1.76095 2.35254 2.51561 2.59526 3.02104 3.56834 3.61014 3.78100 3.84308 3.88878 4.04994 4.16003 4.20957 4.30962 4.50725 4.56991 4.67975 4.75358 4.89001 4.95609 5.09576 5.36262 5.38095 5.42210 5.51080 5.58872 5.77790 6.03698 6.16721 6.65428 6.81298 6.97800 7.32410 7.46058 8.82533 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.005070 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.528547 B = 5521.617376 C = 6419.094495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.564 4.564 8 H 0.054 0.946 9 C 0.245 3.755 10 O -0.588 6.588 11 C -0.118 4.118 12 C 0.053 3.947 13 N -0.486 5.486 14 C 0.285 3.715 15 C -0.152 4.152 16 C -0.082 4.082 17 C 0.538 3.462 18 O -0.541 6.541 19 O -0.489 6.489 20 C -0.103 4.103 21 C 0.108 3.892 22 N -0.472 5.472 23 C 0.071 3.929 24 H 0.270 0.730 25 H 0.374 0.626 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.439 0.561 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.068 0.932 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -15.803 -8.857 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.603 4.603 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.396 6.396 11 C -0.157 4.157 12 C -0.074 4.074 13 N -0.209 5.209 14 C 0.057 3.943 15 C -0.176 4.176 16 C -0.091 4.091 17 C 0.382 3.618 18 O -0.432 6.432 19 O -0.303 6.303 20 C -0.122 4.122 21 C -0.050 4.050 22 N -0.182 5.182 23 C -0.056 4.056 24 H 0.080 0.920 25 H 0.223 0.777 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.148 0.852 31 H 0.302 0.698 32 H 0.211 0.789 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.070 -16.466 -7.502 19.427 hybrid contribution 1.243 2.622 -1.719 3.373 sum 8.313 -13.844 -9.221 18.595 Atomic orbital electron populations 1.69802 1.06751 1.28301 1.49820 1.25639 0.95812 1.02103 0.93123 0.85552 0.78665 0.79118 0.78247 1.20046 1.20372 1.19840 1.21787 0.93507 0.91923 1.53050 0.92753 1.19495 0.87123 0.90627 0.82269 1.86146 1.51585 1.56022 1.45804 1.22741 1.00942 0.92581 0.99417 1.22967 0.97216 0.94843 0.92342 1.61622 1.18793 1.10181 1.30263 1.19864 0.92367 0.91096 0.91012 1.22711 0.96685 1.01030 0.97171 1.19446 0.97409 0.95549 0.96734 1.20668 0.78488 0.82269 0.80386 1.90935 1.66381 1.23735 1.62116 1.84457 1.52961 1.39608 1.53298 1.22874 0.97759 0.95700 0.95900 1.23566 0.90204 0.99182 0.92077 1.67238 1.23533 0.99983 1.27483 1.23170 0.94343 0.89490 0.98559 0.92022 0.77699 0.92923 0.92329 0.93185 0.90039 0.85222 0.69834 0.78946 0.77227 0.91387 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.63 11.00 21.45 0.24 -48.40 16 2 C 0.03 1.83 5.28 84.65 0.45 2.28 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -30.75 8.15 25.60 0.21 -30.54 16 8 H 0.05 2.96 7.78 -2.91 -0.02 2.93 16 9 C 0.25 12.52 0.95 -10.34 -0.01 12.51 16 10 O -0.59 -31.92 13.09 -148.98 -1.95 -33.87 16 11 C -0.12 -5.55 5.26 31.47 0.17 -5.39 16 12 C 0.05 2.12 6.50 86.45 0.56 2.69 16 13 N -0.49 -20.29 5.36 -689.42 -3.70 -23.99 16 14 C 0.29 10.15 5.85 133.08 0.78 10.92 16 15 C -0.15 -4.92 7.45 22.79 0.17 -4.75 16 16 C -0.08 -2.01 5.90 -19.92 -0.12 -2.13 16 17 C 0.54 12.28 8.30 70.43 0.58 12.86 16 18 O -0.54 -16.78 17.23 20.05 0.35 -16.44 16 19 O -0.49 -6.16 12.78 -55.79 -0.71 -6.87 16 20 C -0.10 -1.77 9.70 22.64 0.22 -1.55 16 21 C 0.11 2.15 11.16 84.61 0.94 3.10 16 22 N -0.47 -14.81 10.37 -193.41 -2.01 -16.81 16 23 C 0.07 3.23 5.54 86.65 0.48 3.71 16 24 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 25 H 0.37 20.40 7.46 -74.06 -0.55 19.85 16 26 H 0.05 2.57 7.84 -2.39 -0.02 2.55 16 27 H 0.06 2.88 7.98 -2.39 -0.02 2.86 16 28 H 0.05 1.85 6.66 -2.38 -0.02 1.84 16 29 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.13 4.68 6.72 -2.91 -0.02 4.66 16 31 H 0.44 1.59 9.11 -74.06 -0.67 0.91 16 32 H 0.19 1.64 7.71 -2.91 -0.02 1.62 16 33 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.06 2.49 6.52 -2.38 -0.02 2.47 16 Total: -1.00 -69.50 301.15 -1.40 -70.90 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.07 Total: 27.24 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.43 Total: 3.71 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -5.47 Total: -89.20 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -2.32 Total: -57.18 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -69.50 -1.40 -70.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.779 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds