Wall clock time and date at job start Tue Mar 31 2020 00:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86793 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47451 * 240.00216 * 3 2 1 5 5 H 1.48505 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47287 * 120.00257 * 3 2 1 7 7 C 1.39017 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99551 * 200.74504 * 7 2 1 9 9 N 1.36876 * 120.00161 * 20.74161 * 7 2 1 10 10 C 1.46500 * 119.99801 * 15.69354 * 9 7 2 11 11 C 1.50707 * 109.47143 * 270.93087 * 10 9 7 12 12 O 1.20818 * 119.99970 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99764 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00134 * 195.69281 * 9 7 2 15 15 O 1.21744 * 119.99734 * 4.76080 * 14 9 7 16 16 C 1.46542 * 120.00009 * 184.75866 * 14 9 7 17 17 N 1.37673 * 126.24076 * 256.49590 * 16 14 9 18 18 H 0.96996 * 125.68263 * 359.97438 * 17 16 14 19 19 C 1.35589 * 108.63668 * 179.97438 * 17 16 14 20 20 C 1.35490 * 108.88081 * 0.02562 * 19 17 16 21 21 C 1.38000 * 126.23976 * 76.47932 * 16 14 9 22 22 C 1.50690 * 126.45832 * 0.05140 * 21 16 14 23 23 C 1.53005 * 117.50052 * 188.73171 * 22 21 16 24 24 C 1.52998 * 117.50041 * 120.07285 * 22 21 16 25 25 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47649 * 30.93160 * 10 9 7 27 27 H 1.09004 * 109.47248 * 150.93167 * 10 9 7 28 28 H 0.96698 * 116.99969 * 179.97438 * 13 11 10 29 29 H 1.07994 * 125.56223 * 179.97438 * 19 17 16 30 30 H 1.07995 * 126.06005 * 179.73261 * 20 19 17 31 31 H 1.09005 * 115.55569 * 334.40234 * 22 21 16 32 32 H 1.08997 * 117.49353 * 359.97438 * 23 22 21 33 33 H 1.08995 * 117.49993 * 145.01553 * 23 22 21 34 34 H 1.08999 * 117.50266 * 214.97626 * 24 22 21 35 35 H 1.09001 * 117.49572 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 3.1017 1.6963 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1017 1.6963 1.2124 7 6 2.0089 -1.2040 -0.0005 8 1 3.0365 -1.2344 0.3308 9 7 1.3911 -2.3507 -0.4209 10 6 0.1422 -2.2729 -1.1827 11 6 -1.0269 -2.2675 -0.2317 12 8 -0.8364 -2.3225 0.9601 13 8 -2.2797 -2.2015 -0.7088 14 6 1.9316 -3.5515 -0.1339 15 8 2.9211 -3.6205 0.5721 16 6 1.3284 -4.7739 -0.6715 17 7 0.5460 -5.6689 0.0229 18 1 0.2988 -5.5975 0.9581 19 6 0.1787 -6.6670 -0.8181 20 6 0.7121 -6.4287 -2.0406 21 6 1.4406 -5.2378 -1.9664 22 6 2.2052 -4.5843 -3.0885 23 6 2.0281 -5.1619 -4.4943 24 6 3.3371 -5.3868 -3.7333 25 1 -0.4850 0.8400 -0.0004 26 1 0.1337 -1.3572 -1.7741 27 1 0.0669 -3.1345 -1.8461 28 1 -2.9970 -2.2012 -0.0602 29 1 -0.4377 -7.5141 -0.5562 30 1 0.5982 -7.0507 -2.9161 31 1 2.3394 -3.5062 -3.0007 32 1 1.3589 -6.0148 -4.6072 33 1 2.0461 -4.4638 -5.3311 34 1 4.2158 -4.8366 -4.0699 35 1 3.5284 -6.3876 -3.3460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:44 Heat of formation + Delta-G solvation = -60.122978 kcal Electronic energy + Delta-G solvation = -22489.697126 eV Core-core repulsion = 19068.212651 eV Total energy + Delta-G solvation = -3421.484475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26157 -40.90178 -39.64115 -37.78883 -37.04345 -36.30890 -33.84864 -31.56902 -30.38378 -29.49712 -26.91406 -24.20269 -23.15692 -23.00338 -22.57177 -21.34427 -19.68333 -19.11180 -18.82530 -18.59576 -17.61403 -17.20915 -16.50919 -16.20018 -16.13999 -15.91539 -15.20897 -15.00677 -14.82535 -14.47856 -13.77523 -13.68898 -13.54398 -13.40420 -13.33484 -12.74203 -12.47741 -12.36326 -12.23024 -12.20066 -12.09942 -11.62759 -11.50812 -11.18634 -11.02855 -10.72854 -9.97651 -9.49981 -8.85219 -8.52736 -6.03849 1.05729 1.29304 1.40099 1.51680 1.58187 1.81313 1.96352 2.22962 2.44970 2.54774 2.91343 3.17373 3.23934 3.87019 3.95647 4.11625 4.26187 4.29978 4.38582 4.59934 4.63836 4.71096 4.89195 4.89893 5.01236 5.14118 5.32732 5.36991 5.39230 5.53532 5.88329 5.96603 6.00945 6.13344 6.30275 6.65726 6.98561 7.19928 7.46656 7.81491 8.53886 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.007520 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.575592 B = 3722.631091 C = 4339.466706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.003 3.997 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.346 4.346 8 H 0.081 0.919 9 N -0.418 5.418 10 C 0.153 3.847 11 C 0.508 3.492 12 O -0.548 6.548 13 O -0.521 6.521 14 C 0.511 3.489 15 O -0.627 6.627 16 C -0.049 4.049 17 N -0.534 5.534 18 H 0.418 0.582 19 C 0.014 3.986 20 C -0.206 4.206 21 C -0.096 4.096 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.171 4.171 25 H 0.278 0.722 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.412 0.588 29 H 0.211 0.789 30 H 0.168 0.832 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 -9.185 -9.587 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.199 4.199 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.473 4.473 8 H 0.099 0.901 9 N -0.134 5.134 10 C 0.027 3.973 11 C 0.350 3.650 12 O -0.437 6.437 13 O -0.333 6.333 14 C 0.301 3.699 15 O -0.514 6.514 16 C -0.164 4.164 17 N -0.128 5.128 18 H 0.254 0.746 19 C -0.119 4.119 20 C -0.229 4.229 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.177 4.177 24 C -0.208 4.208 25 H 0.088 0.912 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.271 0.729 29 H 0.227 0.773 30 H 0.186 0.814 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.638 -9.029 -9.044 13.595 hybrid contribution -0.125 1.229 1.655 2.065 sum -4.763 -7.800 -7.389 11.753 Atomic orbital electron populations 1.69667 1.06937 1.28911 1.46803 1.26063 0.96159 1.02570 0.95100 0.84925 0.77888 0.75930 0.79145 1.18402 1.19399 1.20600 1.19630 0.97166 0.84967 1.45578 0.90124 1.43371 1.19263 1.04728 1.46079 1.20620 0.80472 1.04598 0.91589 1.23371 0.83603 0.69305 0.88727 1.90557 1.85804 1.47919 1.19439 1.84436 1.16816 1.86386 1.45645 1.17474 0.86219 0.83048 0.83180 1.90612 1.30827 1.87233 1.42679 1.19886 1.06727 0.95739 0.94009 1.41970 1.39143 1.19234 1.12479 0.74569 1.22605 1.04549 0.94840 0.89943 1.20869 1.04639 0.98613 0.98810 1.19204 1.02665 0.97941 0.90599 1.20328 1.03198 0.97277 0.93112 1.23056 0.98975 1.03309 0.92349 1.23020 0.92839 1.01245 1.03710 0.91179 0.87125 0.87388 0.72919 0.77251 0.81449 0.90107 0.86731 0.87352 0.88538 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.25 8.46 21.68 0.18 -46.07 16 2 C 0.00 0.18 4.93 84.95 0.42 0.60 16 3 Si 1.00 42.21 29.60 68.60 2.03 44.24 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.35 -19.94 9.34 84.09 0.79 -19.16 16 8 H 0.08 4.98 7.39 -2.91 -0.02 4.96 16 9 N -0.42 -22.24 2.11 -644.24 -1.36 -23.60 16 10 C 0.15 6.99 5.15 85.64 0.44 7.43 16 11 C 0.51 23.18 6.17 71.24 0.44 23.62 16 12 O -0.55 -29.41 16.41 21.99 0.36 -29.05 16 13 O -0.52 -18.70 13.42 -51.34 -0.69 -19.39 16 14 C 0.51 27.32 7.26 86.41 0.63 27.95 16 15 O -0.63 -38.90 16.77 -4.49 -0.08 -38.97 16 16 C -0.05 -2.06 5.39 40.34 0.22 -1.84 16 17 N -0.53 -18.20 6.10 -183.57 -1.12 -19.32 16 18 H 0.42 13.69 8.96 -92.71 -0.83 12.86 16 19 C 0.01 0.36 11.89 83.48 0.99 1.35 16 20 C -0.21 -5.48 10.15 22.01 0.22 -5.26 16 21 C -0.10 -3.36 4.93 -19.54 -0.10 -3.46 16 22 C -0.12 -3.91 5.97 -11.54 -0.07 -3.98 16 23 C -0.14 -3.17 10.04 30.62 0.31 -2.86 16 24 C -0.17 -4.54 10.24 30.62 0.31 -4.22 16 25 H 0.28 13.70 8.31 -92.71 -0.77 12.92 16 26 H 0.11 5.14 6.76 -2.39 -0.02 5.13 16 27 H 0.11 4.39 6.00 -2.38 -0.01 4.38 16 28 H 0.41 11.14 9.10 -74.06 -0.67 10.46 16 29 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.17 3.27 7.25 -2.91 -0.02 3.25 16 31 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.11 2.13 7.03 -2.39 -0.02 2.11 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -77.66 307.09 3.59 -74.07 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.35 Total: 37.94 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 4.60 Total: 20.16 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.29 Total: -88.99 kcal Atomic # 8 Polarization: -87.01 SS G_CDS: -0.40 Total: -87.42 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -77.66 3.59 -74.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.948 kcal (2) G-P(sol) polarization free energy of solvation -77.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds