Wall clock time and date at job start Tue Mar 31 2020 00:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48507 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00351 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00464 * 3 2 1 7 7 C 1.38894 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00013 * 187.36644 * 7 2 1 9 9 N 1.37215 * 120.00305 * 7.35659 * 7 2 1 10 10 C 1.34769 * 120.00074 * 230.17217 * 9 7 2 11 11 O 1.21265 * 120.00127 * 184.97013 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96722 * 10 9 7 13 13 C 1.53004 * 109.47273 * 184.99605 * 12 10 9 14 14 C 1.53001 * 109.46923 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46853 * 180.02562 * 14 13 12 16 16 O 1.20821 * 120.00369 * 359.97438 * 15 14 13 17 17 O 1.34234 * 119.99644 * 180.02562 * 15 14 13 18 18 C 1.39420 * 119.99539 * 50.16634 * 9 7 2 19 19 C 1.39065 * 119.70271 * 5.00399 * 18 9 7 20 20 C 1.38375 * 119.10388 * 180.02562 * 19 18 9 21 21 C 1.38836 * 118.48958 * 359.97438 * 20 19 18 22 22 C 1.38145 * 119.31154 * 0.25742 * 21 20 19 23 23 N 1.31880 * 120.85262 * 359.46924 * 22 21 20 24 24 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 25 25 H 1.09001 * 109.47471 * 304.99412 * 12 10 9 26 26 H 1.09003 * 109.46959 * 64.99492 * 12 10 9 27 27 H 1.08996 * 109.46883 * 299.99805 * 13 12 10 28 28 H 1.08999 * 109.47375 * 60.00536 * 13 12 10 29 29 H 1.09007 * 109.47295 * 299.99981 * 14 13 12 30 30 H 1.08993 * 109.47443 * 59.99808 * 14 13 12 31 31 H 0.96695 * 116.99399 * 179.97438 * 17 15 14 32 32 H 1.08003 * 120.44665 * 0.04076 * 19 18 9 33 33 H 1.07996 * 120.76052 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.34064 * 179.97438 * 21 20 19 35 35 H 1.07995 * 119.57192 * 179.75152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0085 -1.2029 -0.0005 8 1 3.0819 -1.2069 0.1194 9 7 1.3309 -2.3863 -0.1532 10 6 1.5435 -3.4005 0.7084 11 8 1.0140 -4.4754 0.5221 12 6 2.4392 -3.1989 1.9034 13 6 2.6099 -4.5275 2.6429 14 6 3.5188 -4.3226 3.8564 15 6 3.6874 -5.6313 4.5844 16 8 3.1367 -6.6257 4.1749 17 8 4.4485 -5.6920 5.6884 18 6 0.4225 -2.5392 -1.1997 19 6 0.2843 -1.5291 -2.1454 20 6 -0.6214 -1.6937 -3.1786 21 6 -1.3603 -2.8680 -3.2307 22 6 -1.1750 -3.8276 -2.2544 23 7 -0.3005 -3.6452 -1.2842 24 1 -0.4850 0.8368 0.0734 25 1 3.4135 -2.8405 1.5710 26 1 1.9914 -2.4650 2.5735 27 1 1.6357 -4.8859 2.9754 28 1 3.0578 -5.2613 1.9728 29 1 4.4931 -3.9638 3.5243 30 1 3.0706 -3.5889 4.5264 31 1 4.5264 -6.5533 6.1211 32 1 0.8761 -0.6284 -2.0746 33 1 -0.7501 -0.9266 -3.9278 34 1 -2.0758 -3.0275 -4.0238 35 1 -1.7504 -4.7408 -2.2886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:29 Heat of formation + Delta-G solvation = -103.323944 kcal Electronic energy + Delta-G solvation = -21274.428198 eV Core-core repulsion = 17851.070388 eV Total energy + Delta-G solvation = -3423.357810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51353 -41.16824 -39.65116 -37.17797 -36.90064 -35.26663 -33.89441 -32.74407 -31.22517 -29.50815 -27.10074 -25.19821 -23.95060 -23.26015 -21.58652 -20.93917 -19.67142 -18.92366 -18.05822 -17.47466 -17.24532 -17.22517 -16.76789 -16.41428 -16.08491 -15.79857 -15.16196 -15.14013 -14.63685 -14.17727 -14.01001 -13.70714 -13.42730 -13.17996 -12.98425 -12.85937 -12.82322 -12.49289 -12.36606 -12.31453 -11.96306 -11.68603 -11.60540 -11.13441 -10.77931 -10.65217 -10.41445 -9.66339 -8.78515 -8.20881 -6.35950 0.56286 0.76960 1.26501 1.46752 1.52283 1.65066 2.07195 2.15090 2.30948 2.77593 2.96822 3.47120 3.76615 3.97221 4.07871 4.19166 4.21853 4.35430 4.56413 4.64450 4.67014 4.69224 4.77757 4.84316 4.95890 5.17621 5.19269 5.37500 5.42110 5.44829 5.60224 5.67502 5.92108 6.19021 6.44195 7.03626 7.05011 7.18688 7.57060 8.04122 8.69589 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.005414 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.499062 B = 5170.798360 C = 6706.680437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.016 3.984 3 Si 0.989 3.011 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.371 4.371 8 H 0.114 0.886 9 N -0.404 5.404 10 C 0.469 3.531 11 O -0.564 6.564 12 C -0.104 4.104 13 C -0.085 4.085 14 C -0.105 4.105 15 C 0.483 3.517 16 O -0.561 6.561 17 O -0.510 6.510 18 C 0.349 3.651 19 C -0.160 4.160 20 C -0.080 4.080 21 C -0.220 4.220 22 C 0.087 3.913 23 N -0.538 5.538 24 H 0.274 0.726 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.425 0.575 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 0.506 3.861 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.171 1.171 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.497 4.497 8 H 0.131 0.869 9 N -0.117 5.117 10 C 0.260 3.740 11 O -0.443 6.443 12 C -0.144 4.144 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.328 3.672 16 O -0.452 6.452 17 O -0.323 6.323 18 C 0.119 3.881 19 C -0.184 4.184 20 C -0.106 4.106 21 C -0.241 4.241 22 C -0.071 4.071 23 N -0.255 5.255 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.287 0.713 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.548 -0.452 4.165 7.774 hybrid contribution -0.317 0.712 -0.334 0.849 sum 6.231 0.260 3.831 7.319 Atomic orbital electron populations 1.70127 1.08060 1.29280 1.44262 1.26434 0.95840 1.03230 0.93506 0.84933 0.79469 0.76598 0.77889 1.17056 1.20507 1.20252 1.19879 0.92937 0.81683 1.55221 0.86885 1.41594 1.35411 1.13944 1.20745 1.21943 0.83313 0.83717 0.84981 1.90627 1.51526 1.26966 1.75166 1.21358 1.00525 0.98544 0.93932 1.21024 0.99386 0.96183 0.95733 1.21395 1.04328 0.92216 0.96223 1.23857 0.73671 0.91535 0.78141 1.90749 1.47539 1.39705 1.67219 1.84505 1.64858 1.43183 1.39782 1.19242 0.91015 0.89699 0.88095 1.21545 1.02398 0.99522 0.94985 1.21633 0.94184 0.97766 0.96969 1.22070 1.04232 0.95415 1.02413 1.22876 0.94198 0.99727 0.90336 1.67568 1.08771 1.23076 1.26070 0.91588 0.86902 0.87979 0.93532 0.92919 0.84397 0.84977 0.71323 0.85628 0.83060 0.82296 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.24 11.12 21.65 0.24 -45.00 16 2 C 0.02 0.72 3.59 84.91 0.31 1.02 16 3 Si 0.99 35.47 29.56 68.60 2.03 37.50 16 4 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 5 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.28 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.37 -17.50 7.67 84.01 0.64 -16.86 16 8 H 0.11 4.81 7.36 -2.91 -0.02 4.79 16 9 N -0.40 -21.02 2.68 -464.39 -1.24 -22.27 16 10 C 0.47 23.42 7.58 87.66 0.66 24.08 16 11 O -0.56 -31.90 14.28 -2.98 -0.04 -31.94 16 12 C -0.10 -3.75 4.62 29.85 0.14 -3.62 16 13 C -0.08 -2.81 3.81 30.60 0.12 -2.69 16 14 C -0.10 -2.27 5.81 29.85 0.17 -2.10 16 15 C 0.48 11.85 8.33 71.24 0.59 12.44 16 16 O -0.56 -19.10 16.74 21.98 0.37 -18.73 16 17 O -0.51 -8.66 13.42 -51.46 -0.69 -9.35 16 18 C 0.35 18.60 6.63 132.90 0.88 19.48 16 19 C -0.16 -7.66 7.61 22.50 0.17 -7.49 16 20 C -0.08 -3.13 10.17 22.45 0.23 -2.90 16 21 C -0.22 -8.06 10.11 22.39 0.23 -7.83 16 22 C 0.09 3.74 11.18 84.66 0.95 4.68 16 23 N -0.54 -28.70 7.92 -192.96 -1.53 -30.23 16 24 H 0.27 13.25 8.32 -92.71 -0.77 12.48 16 25 H 0.11 3.46 7.54 -2.39 -0.02 3.44 16 26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 27 H 0.05 1.80 8.00 -2.39 -0.02 1.78 16 28 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 29 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.43 3.78 9.10 -74.06 -0.67 3.11 16 32 H 0.13 6.10 5.55 -2.91 -0.02 6.08 16 33 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.16 5.85 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -76.18 306.70 4.67 -71.51 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.45 Total: 30.28 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.09 Total: 18.23 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -2.53 Total: -97.49 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.37 Total: -60.02 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -76.18 4.67 -71.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.819 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds