Wall clock time and date at job start Tue Mar 31 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37645 * 120.02642 * 2 1 4 4 C 1.39849 * 119.80246 * 180.27912 * 3 2 1 5 5 C 1.47385 * 120.07658 * 179.74338 * 4 3 2 6 6 O 1.21515 * 119.99927 * 359.97438 * 5 4 3 7 7 O 1.34761 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.39857 * 119.84914 * 359.71655 * 4 3 2 9 9 C 1.36572 * 120.05484 * 0.02562 * 8 4 3 10 10 C 1.39236 * 120.02975 * 179.74685 * 2 1 3 11 11 N 1.39017 * 119.92473 * 0.02562 * 10 2 1 12 12 C 1.46499 * 119.99928 * 179.72981 * 11 10 2 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47117 * 59.99412 * 20 18 16 22 22 H 1.48498 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00019 * 20 18 16 24 24 H 1.09004 * 109.46908 * 270.25349 * 1 2 3 25 25 H 1.08997 * 109.47370 * 30.25839 * 1 2 3 26 26 H 1.09002 * 109.46770 * 150.25865 * 1 2 3 27 27 H 1.08000 * 120.09786 * 359.97438 * 3 2 1 28 28 H 0.96705 * 116.99653 * 179.97438 * 7 5 4 29 29 H 1.08008 * 119.97298 * 179.97438 * 8 4 3 30 30 H 1.08000 * 119.89831 * 180.02562 * 9 8 4 31 31 H 0.97000 * 119.99652 * 359.72458 * 11 10 2 32 32 H 1.09002 * 109.47391 * 59.99918 * 12 11 10 33 33 H 1.09001 * 109.46813 * 299.99974 * 12 11 10 34 34 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 35 35 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1917 0.0000 4 6 3.5943 1.1863 -0.0059 5 6 4.3378 2.4588 -0.0117 6 8 3.7358 3.5143 -0.0117 7 8 5.6854 2.4517 -0.0168 8 6 4.2856 -0.0295 -0.0058 9 6 3.5962 -1.2084 -0.0004 10 6 2.2038 -1.2054 0.0053 11 7 1.5078 -2.4088 0.0101 12 6 2.2393 -3.6781 0.0097 13 6 1.2590 -4.8227 0.0161 14 8 0.0667 -4.6001 0.0200 15 7 1.7073 -6.0938 0.0163 16 6 0.8156 -7.1351 0.0216 17 1 -0.2461 -6.9369 0.0259 18 6 1.2776 -8.4455 0.0224 19 7 2.5695 -8.6867 0.0176 20 14 0.0627 -9.8644 0.0288 21 1 -0.7950 -9.7871 -1.1809 22 1 0.8041 -11.1510 0.0281 23 1 -0.7871 -9.7828 1.2440 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6578 2.1282 -0.0004 28 1 6.1289 3.3110 -0.0209 29 1 5.3657 -0.0360 -0.0108 30 1 4.1326 -2.1457 0.0001 31 1 0.5378 -2.4080 0.0138 32 1 2.8692 -3.7347 0.8975 33 1 2.8626 -3.7379 -0.8825 34 1 2.6608 -6.2718 0.0128 35 1 2.8920 -9.6015 0.0178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610442827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:06 Heat of formation + Delta-G solvation = -109.805763 kcal Electronic energy + Delta-G solvation = -20293.865144 eV Core-core repulsion = 16870.226261 eV Total energy + Delta-G solvation = -3423.638882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.45281 -39.41525 -38.32513 -36.11040 -35.26001 -34.07541 -32.89137 -31.48116 -30.12312 -27.49695 -26.88917 -24.78804 -23.43182 -21.91945 -20.63609 -19.52451 -18.27750 -17.95979 -17.57333 -16.97524 -15.84802 -15.61429 -15.55237 -15.00437 -14.66963 -14.34456 -14.15768 -13.81139 -13.66396 -13.39227 -13.20490 -12.62846 -12.52338 -12.37621 -11.96419 -11.80751 -11.67094 -11.57711 -11.17696 -10.94573 -10.60148 -10.56962 -10.38653 -10.13782 -9.70782 -8.89616 -8.74665 -8.19720 -7.40279 -6.60162 -4.02439 0.90642 1.42472 2.62178 3.06088 3.07684 3.16563 3.19354 3.42454 3.62546 3.84885 4.04898 4.70426 4.76499 4.83542 5.07464 5.12436 5.21322 5.30656 5.44523 5.61380 5.65512 5.67670 5.73369 5.87029 5.98039 6.13275 6.24399 6.28462 6.43538 6.45439 6.73314 7.26295 7.37937 7.77792 7.86213 7.89542 8.35259 8.95943 9.28733 9.76519 10.56500 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040390 B = 0.003008 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.068057 B = 9306.174101 C = 9978.792115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.184 4.184 3 C 0.000 4.000 4 C -0.211 4.211 5 C 0.534 3.466 6 O -0.533 6.533 7 O -0.517 6.517 8 C -0.010 4.010 9 C -0.218 4.218 10 C 0.269 3.731 11 N -0.706 5.706 12 C 0.105 3.895 13 C 0.426 3.574 14 O -0.595 6.595 15 N -0.547 5.547 16 C -0.307 4.307 17 H 0.105 0.895 18 C 0.027 3.973 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.409 0.591 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.415 0.585 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.395 0.605 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 15.065 -0.049 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.189 4.189 3 C -0.019 4.019 4 C -0.214 4.214 5 C 0.381 3.619 6 O -0.424 6.424 7 O -0.329 6.329 8 C -0.029 4.029 9 C -0.241 4.241 10 C 0.158 3.842 11 N -0.334 5.334 12 C -0.024 4.024 13 C 0.212 3.788 14 O -0.482 6.482 15 N -0.182 5.182 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.176 4.176 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.266 0.734 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.508 14.640 -0.046 15.318 hybrid contribution 0.143 -0.386 0.003 0.411 sum 4.651 14.254 -0.043 14.994 Atomic orbital electron populations 1.20604 0.90588 1.02782 1.02351 1.19254 0.96272 0.90993 1.12392 1.20786 0.91826 0.97545 0.91725 1.18590 0.92955 0.90203 1.19691 1.20883 0.79965 0.89590 0.71491 1.90856 1.69757 1.33704 1.48100 1.84588 1.21499 1.40532 1.86235 1.20841 0.99965 0.90680 0.91403 1.20426 0.91920 0.99147 1.12605 1.18020 0.91531 0.85786 0.88892 1.44746 1.10094 1.01845 1.76697 1.21101 0.94935 0.83779 1.02539 1.19658 0.89132 0.84074 0.85980 1.90513 1.16477 1.83939 1.57264 1.41784 1.09959 1.03939 1.62499 1.19684 0.91408 0.84034 1.48499 0.87712 1.25323 0.96735 0.98916 0.96595 1.69596 1.12609 1.22176 1.49067 0.85865 0.79623 0.79238 0.79236 1.19722 1.20779 1.19716 0.91379 0.91345 0.91596 0.84920 0.73368 0.84909 0.85049 0.74395 0.90018 0.90029 0.77079 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.56 36.01 0.34 -0.86 16 2 C -0.18 -2.37 5.89 -104.47 -0.62 -2.99 16 3 C 0.00 0.01 9.24 -39.20 -0.36 -0.36 16 4 C -0.21 -2.66 5.88 -104.97 -0.62 -3.27 16 5 C 0.53 6.60 8.26 34.45 0.28 6.88 16 6 O -0.53 -7.92 17.13 -19.28 -0.33 -8.25 16 7 O -0.52 -4.72 12.67 -40.66 -0.51 -5.24 16 8 C -0.01 -0.11 9.55 -39.58 -0.38 -0.49 16 9 C -0.22 -2.70 9.23 -39.81 -0.37 -3.07 16 10 C 0.27 3.69 6.63 -83.86 -0.56 3.13 16 11 N -0.71 -10.79 5.58 -59.81 -0.33 -11.13 16 12 C 0.10 1.67 5.37 -5.19 -0.03 1.64 16 13 C 0.43 9.22 7.85 -10.98 -0.09 9.14 16 14 O -0.60 -14.85 15.24 5.55 0.08 -14.77 16 15 N -0.55 -12.88 5.29 -10.96 -0.06 -12.93 16 16 C -0.31 -8.08 9.68 -14.94 -0.14 -8.23 16 17 H 0.11 2.89 7.16 -52.49 -0.38 2.52 16 18 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 19 N -0.89 -23.04 13.05 55.50 0.72 -22.32 16 20 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.07 0.79 6.54 -51.93 -0.34 0.45 16 27 H 0.13 1.57 7.65 -52.49 -0.40 1.17 16 28 H 0.41 1.86 9.11 45.56 0.42 2.27 16 29 H 0.13 1.29 7.60 -52.48 -0.40 0.89 16 30 H 0.13 1.45 6.69 -52.49 -0.35 1.10 16 31 H 0.42 6.78 5.41 -40.82 -0.22 6.56 16 32 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.40 8.79 7.90 -40.82 -0.32 8.47 16 35 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -31.10 310.93 -6.18 -37.28 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -2.80 Total: 15.53 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.62 Total: 2.13 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.33 Total: -46.38 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.76 Total: -28.25 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.10 -6.18 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610442827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.521 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds