Wall clock time and date at job start Tue Mar 31 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37645 * 120.02642 * 2 1 4 4 C 1.39849 * 119.80246 * 180.27912 * 3 2 1 5 5 C 1.47385 * 120.07658 * 179.74338 * 4 3 2 6 6 O 1.21515 * 119.99927 * 359.97438 * 5 4 3 7 7 O 1.34761 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.39857 * 119.84914 * 359.71655 * 4 3 2 9 9 C 1.36572 * 120.05484 * 0.02562 * 8 4 3 10 10 C 1.39236 * 120.02975 * 179.74685 * 2 1 3 11 11 N 1.39017 * 119.92473 * 0.02562 * 10 2 1 12 12 C 1.46499 * 119.99928 * 179.72981 * 11 10 2 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47117 * 59.99412 * 20 18 16 22 22 H 1.48498 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00019 * 20 18 16 24 24 H 1.09004 * 109.46908 * 270.25349 * 1 2 3 25 25 H 1.08997 * 109.47370 * 30.25839 * 1 2 3 26 26 H 1.09002 * 109.46770 * 150.25865 * 1 2 3 27 27 H 1.08000 * 120.09786 * 359.97438 * 3 2 1 28 28 H 0.96705 * 116.99653 * 179.97438 * 7 5 4 29 29 H 1.08008 * 119.97298 * 179.97438 * 8 4 3 30 30 H 1.08000 * 119.89831 * 180.02562 * 9 8 4 31 31 H 0.97000 * 119.99652 * 359.72458 * 11 10 2 32 32 H 1.09002 * 109.47391 * 59.99918 * 12 11 10 33 33 H 1.09001 * 109.46813 * 299.99974 * 12 11 10 34 34 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 35 35 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1917 0.0000 4 6 3.5943 1.1863 -0.0059 5 6 4.3378 2.4588 -0.0117 6 8 3.7358 3.5143 -0.0117 7 8 5.6854 2.4517 -0.0168 8 6 4.2856 -0.0295 -0.0058 9 6 3.5962 -1.2084 -0.0004 10 6 2.2038 -1.2054 0.0053 11 7 1.5078 -2.4088 0.0101 12 6 2.2393 -3.6781 0.0097 13 6 1.2590 -4.8227 0.0161 14 8 0.0667 -4.6001 0.0200 15 7 1.7073 -6.0938 0.0163 16 6 0.8156 -7.1351 0.0216 17 1 -0.2461 -6.9369 0.0259 18 6 1.2776 -8.4455 0.0224 19 7 2.5695 -8.6867 0.0176 20 14 0.0627 -9.8644 0.0288 21 1 -0.7950 -9.7871 -1.1809 22 1 0.8041 -11.1510 0.0281 23 1 -0.7871 -9.7828 1.2440 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6578 2.1282 -0.0004 28 1 6.1289 3.3110 -0.0209 29 1 5.3657 -0.0360 -0.0108 30 1 4.1326 -2.1457 0.0001 31 1 0.5378 -2.4080 0.0138 32 1 2.8692 -3.7347 0.8975 33 1 2.8626 -3.7379 -0.8825 34 1 2.6608 -6.2718 0.0128 35 1 2.8920 -9.6015 0.0178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610442827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:05 Heat of formation + Delta-G solvation = -131.773686 kcal Electronic energy + Delta-G solvation = -20294.817744 eV Core-core repulsion = 16870.226261 eV Total energy + Delta-G solvation = -3424.591483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.41909 -40.60488 -39.82853 -36.99774 -36.54332 -35.82965 -33.86641 -33.35432 -31.22923 -28.80681 -27.87105 -26.47933 -24.48315 -22.98871 -21.60272 -21.11367 -20.03817 -19.08633 -18.63900 -17.98386 -17.23256 -16.96674 -16.56145 -16.38161 -16.35914 -15.74955 -15.29068 -14.99493 -14.91367 -14.41547 -14.15418 -13.98328 -13.89969 -13.54898 -13.42409 -13.01469 -12.87684 -12.73690 -12.48380 -12.47941 -12.14597 -11.88618 -11.58644 -11.57814 -11.21115 -10.55547 -10.09969 -9.83513 -8.52020 -8.46963 -6.01604 -0.07530 0.47695 1.37227 1.42426 1.52287 1.65838 1.91976 2.14600 2.25389 2.36923 2.88413 3.13741 3.15710 3.81804 3.90237 4.15780 4.25955 4.29350 4.36816 4.41626 4.46654 4.57586 4.77349 4.78781 4.97276 5.22123 5.29914 5.35412 5.37280 5.47866 5.67736 5.75072 5.90164 6.21263 6.49525 6.61454 7.04171 7.09514 7.44612 7.96625 8.64365 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040390 B = 0.003008 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.068057 B = 9306.174101 C = 9978.792115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.188 4.188 3 C -0.006 4.006 4 C -0.219 4.219 5 C 0.539 3.461 6 O -0.563 6.563 7 O -0.507 6.507 8 C -0.004 4.004 9 C -0.219 4.219 10 C 0.253 3.747 11 N -0.717 5.717 12 C 0.120 3.880 13 C 0.428 3.572 14 O -0.631 6.631 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.913 5.913 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.272 1.272 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.137 0.863 28 H 0.430 0.570 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 15.469 -0.049 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.193 4.193 3 C -0.026 4.026 4 C -0.222 4.222 5 C 0.387 3.613 6 O -0.457 6.457 7 O -0.320 6.320 8 C -0.023 4.023 9 C -0.241 4.241 10 C 0.144 3.856 11 N -0.345 5.345 12 C -0.008 4.008 13 C 0.215 3.785 14 O -0.519 6.519 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.208 4.208 19 N -0.553 5.553 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.197 1.197 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.291 0.709 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.235 0.765 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.919 15.077 -0.046 16.197 hybrid contribution -0.210 -0.362 0.003 0.418 sum 5.709 14.715 -0.043 15.784 Atomic orbital electron populations 1.20622 0.89930 1.03006 1.02702 1.19419 0.96959 0.90913 1.12019 1.20887 0.92217 0.97584 0.91872 1.18818 0.93159 0.90954 1.19301 1.20816 0.80786 0.88935 0.70747 1.90849 1.70611 1.34636 1.49619 1.84531 1.19820 1.42302 1.85382 1.21051 1.01038 0.89880 0.90354 1.20651 0.91373 1.00172 1.11942 1.18201 0.92198 0.85306 0.89903 1.44679 1.09687 1.02005 1.78173 1.21004 0.93409 0.81683 1.04725 1.20632 0.89640 0.84796 0.83386 1.90490 1.18671 1.84696 1.58063 1.41814 1.09847 1.04246 1.63484 1.19644 0.91024 0.85604 1.50558 0.90019 1.26032 0.98390 1.00552 0.95807 1.69648 1.13588 1.22888 1.49202 0.85000 0.77713 0.76750 0.78994 1.19689 1.19491 1.19675 0.90982 0.89847 0.92576 0.84562 0.70888 0.82656 0.83503 0.75264 0.87677 0.87694 0.76456 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.56 71.24 0.68 -1.66 16 2 C -0.19 -4.66 5.89 -19.76 -0.12 -4.78 16 3 C -0.01 -0.16 9.24 22.52 0.21 0.05 16 4 C -0.22 -5.10 5.88 -20.09 -0.12 -5.21 16 5 C 0.54 12.27 8.26 70.23 0.58 12.85 16 6 O -0.56 -16.03 17.13 19.79 0.34 -15.70 16 7 O -0.51 -7.80 12.67 -56.72 -0.72 -8.52 16 8 C 0.00 -0.09 9.55 22.27 0.21 0.12 16 9 C -0.22 -4.87 9.23 22.12 0.20 -4.67 16 10 C 0.25 6.58 6.63 38.48 0.26 6.83 16 11 N -0.72 -21.25 5.58 -343.14 -1.91 -23.16 16 12 C 0.12 3.62 5.37 85.63 0.46 4.08 16 13 C 0.43 18.54 7.85 87.66 0.69 19.23 16 14 O -0.63 -32.06 15.24 -3.07 -0.05 -32.11 16 15 N -0.56 -26.43 5.29 -306.98 -1.62 -28.06 16 16 C -0.34 -18.15 9.68 84.04 0.81 -17.33 16 17 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 18 C -0.01 -0.34 5.50 84.92 0.47 0.12 16 19 N -0.91 -46.65 13.05 21.66 0.28 -46.37 16 20 Si 0.99 40.82 29.55 68.60 2.03 42.85 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 26 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 27 H 0.14 3.12 7.65 -2.91 -0.02 3.10 16 28 H 0.43 2.66 9.11 -74.05 -0.67 1.98 16 29 H 0.16 2.45 7.60 -2.91 -0.02 2.43 16 30 H 0.15 2.76 6.69 -2.91 -0.02 2.74 16 31 H 0.41 13.36 5.41 -92.71 -0.50 12.85 16 32 H 0.11 2.73 7.93 -2.39 -0.02 2.71 16 33 H 0.11 2.72 7.93 -2.39 -0.02 2.70 16 34 H 0.40 17.77 7.90 -92.71 -0.73 17.03 16 35 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -66.72 310.93 1.95 -64.77 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.73 Total: 36.65 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.34 Total: 9.64 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -3.26 Total: -97.59 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -0.43 Total: -56.32 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -66.72 1.95 -64.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610442827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.001 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds