Wall clock time and date at job start Tue Mar 31 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38272 * 119.88506 * 2 1 4 4 C 1.37956 * 120.22589 * 180.23330 * 3 2 1 5 5 C 1.39669 * 119.99326 * 359.52197 * 4 3 2 6 6 C 1.47737 * 120.11906 * 180.23304 * 5 4 3 7 7 O 1.21468 * 120.00072 * 179.97438 * 6 5 4 8 8 O 1.34716 * 119.99845 * 359.97438 * 6 5 4 9 9 C 1.39513 * 119.76334 * 0.24712 * 5 4 3 10 10 C 1.38615 * 119.77620 * 0.02562 * 9 5 4 11 11 N 1.39975 * 119.99609 * 179.97438 * 10 9 5 12 12 C 1.34775 * 120.00215 * 325.25395 * 11 10 9 13 13 O 1.21585 * 119.99691 * 4.51062 * 12 11 10 14 14 N 1.34773 * 120.00282 * 184.51200 * 12 11 10 15 15 C 1.46499 * 120.00522 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47527 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47137 * 90.00006 * 20 18 16 22 22 H 1.48496 * 109.47347 * 210.00048 * 20 18 16 23 23 H 1.48503 * 109.47390 * 330.00406 * 20 18 16 24 24 H 1.08998 * 109.47079 * 270.23034 * 1 2 3 25 25 H 1.09003 * 109.47254 * 30.22040 * 1 2 3 26 26 H 1.08998 * 109.47324 * 150.22839 * 1 2 3 27 27 H 1.07995 * 119.88170 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.00450 * 179.79213 * 4 3 2 29 29 H 0.96703 * 117.00038 * 180.02562 * 8 6 5 30 30 H 1.08005 * 120.10987 * 179.97438 * 9 5 4 31 31 H 0.97009 * 119.99933 * 145.25557 * 11 10 9 32 32 H 0.97007 * 119.99704 * 0.02562 * 14 12 11 33 33 H 1.09001 * 109.47103 * 300.00690 * 15 14 12 34 34 H 1.09004 * 109.46695 * 59.99843 * 15 14 12 35 35 H 0.97002 * 119.99861 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1989 0.0000 4 6 3.5754 1.2071 -0.0049 5 6 4.2808 0.0016 0.0003 6 6 5.7582 0.0072 0.0003 7 8 6.3695 -1.0424 0.0053 8 8 6.4274 1.1764 -0.0052 9 6 3.5854 -1.2078 0.0051 10 6 2.1992 -1.2048 0.0043 11 7 1.4968 -2.4155 0.0085 12 6 1.9885 -3.4823 -0.6522 13 8 3.0806 -3.4181 -1.1829 14 7 1.2699 -4.6201 -0.7247 15 6 1.8041 -5.7795 -1.4434 16 6 0.8130 -6.9127 -1.3761 17 1 -0.1216 -6.7821 -0.8509 18 6 1.0995 -8.1161 -1.9851 19 7 2.2378 -8.2752 -2.6241 20 14 -0.1288 -9.5210 -1.9011 21 1 -1.0547 -9.4389 -3.0592 22 1 0.5969 -10.8160 -1.9385 23 1 -0.9053 -9.4250 -0.6389 24 1 -0.3633 0.0041 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6521 2.1319 0.0004 28 1 4.1100 2.1456 -0.0082 29 1 7.3932 1.1295 -0.0053 30 1 4.1252 -2.1432 0.0087 31 1 0.6560 -2.4867 0.4871 32 1 0.3984 -4.6711 -0.3016 33 1 1.9795 -5.5119 -2.4854 34 1 2.7432 -6.0899 -0.9851 35 1 2.4391 -9.1217 -3.0528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610488968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:10 Heat of formation + Delta-G solvation = -98.629925 kcal Electronic energy + Delta-G solvation = -20682.910322 eV Core-core repulsion = 17259.756060 eV Total energy + Delta-G solvation = -3423.154262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.72184 -39.86571 -38.37858 -36.10170 -34.76229 -34.23430 -32.74891 -32.39442 -29.76799 -27.89420 -26.98175 -23.80156 -23.19226 -22.15474 -20.89413 -20.34425 -18.32432 -18.24682 -17.59845 -16.26249 -15.92166 -15.65558 -15.45104 -15.15583 -14.86088 -14.59456 -13.98214 -13.87334 -13.80282 -13.33902 -13.11405 -12.54106 -12.30771 -12.01985 -11.96339 -11.79067 -11.56172 -11.46942 -10.99360 -10.93009 -10.62838 -10.33661 -10.21783 -9.49941 -9.42138 -8.89108 -8.78416 -8.21557 -7.80104 -6.18360 -4.25812 0.63745 1.33946 2.49817 2.86692 3.14575 3.23153 3.29858 3.32250 3.57081 3.89113 4.29764 4.66164 4.70620 4.86775 4.97210 5.06247 5.17870 5.25639 5.39881 5.43785 5.56830 5.80256 5.89563 6.16857 6.26697 6.34166 6.43329 6.50920 6.95862 7.02127 7.35909 7.45975 7.50213 7.77596 7.87421 7.96027 8.64218 8.79753 9.13688 9.41060 10.91749 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.003728 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.289977 B = 7508.813285 C = 8559.491016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.084 4.084 5 C -0.118 4.118 6 C 0.525 3.475 7 O -0.504 6.504 8 O -0.516 6.516 9 C -0.053 4.053 10 C 0.168 3.832 11 N -0.693 5.693 12 C 0.688 3.312 13 O -0.578 6.578 14 N -0.720 5.720 15 C 0.265 3.735 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.412 0.588 30 H 0.161 0.839 31 H 0.405 0.595 32 H 0.389 0.611 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 20.661 7.560 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.103 4.103 5 C -0.120 4.120 6 C 0.369 3.631 7 O -0.392 6.392 8 O -0.328 6.328 9 C -0.074 4.074 10 C 0.071 3.929 11 N -0.341 5.341 12 C 0.388 3.612 13 O -0.455 6.455 14 N -0.371 5.371 15 C 0.144 3.856 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.270 0.730 30 H 0.178 0.822 31 H 0.240 0.760 32 H 0.221 0.779 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.174 20.127 6.905 21.311 hybrid contribution -0.735 -0.944 0.335 1.243 sum -1.909 19.182 7.240 20.592 Atomic orbital electron populations 1.20809 0.90576 1.03586 1.02571 1.19974 0.96500 0.91764 1.00649 1.20751 0.93675 0.97055 1.02148 1.21302 0.94148 0.97221 0.97666 1.18831 0.88824 0.94534 1.09813 1.20905 0.88916 0.80894 0.72377 1.90942 1.69841 1.33053 1.45357 1.84540 1.26733 1.35273 1.86243 1.21561 0.92877 0.98775 0.94178 1.17147 0.90510 0.84673 1.00552 1.42793 1.26460 1.09413 1.55468 1.16204 0.84820 0.80403 0.79764 1.90916 1.20367 1.82537 1.51695 1.45775 1.21134 1.12520 1.57678 1.19081 0.94911 0.79829 0.91753 1.21188 1.03832 0.97165 1.36112 0.91875 1.24943 0.95618 0.98629 0.94774 1.69976 1.22497 1.25733 1.33875 0.86396 0.80725 0.81161 0.78494 1.20460 1.20974 1.19756 0.90724 0.90837 0.91116 0.85008 0.84663 0.72973 0.82193 0.75969 0.77892 0.95441 0.95374 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.46 36.00 0.34 -0.61 16 2 C -0.09 -0.95 5.90 -104.35 -0.62 -1.57 16 3 C -0.12 -1.15 9.67 -39.67 -0.38 -1.54 16 4 C -0.08 -0.92 9.61 -39.15 -0.38 -1.30 16 5 C -0.12 -1.68 5.87 -105.01 -0.62 -2.30 16 6 C 0.53 7.50 8.27 34.61 0.29 7.78 16 7 O -0.50 -9.13 17.13 -19.24 -0.33 -9.46 16 8 O -0.52 -5.07 12.68 -40.54 -0.51 -5.58 16 9 C -0.05 -0.89 8.24 -38.97 -0.32 -1.21 16 10 C 0.17 2.46 6.28 -83.74 -0.53 1.93 16 11 N -0.69 -10.31 4.75 -14.26 -0.07 -10.37 16 12 C 0.69 13.92 8.41 -86.92 -0.73 13.19 16 13 O -0.58 -14.24 13.75 5.29 0.07 -14.16 16 14 N -0.72 -14.89 5.55 -66.42 -0.37 -15.26 16 15 C 0.26 6.99 5.43 -5.20 -0.03 6.96 16 16 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 17 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.01 13.29 55.43 0.74 -25.28 16 20 Si 0.91 20.69 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.14 1.17 7.61 -52.48 -0.40 0.77 16 29 H 0.41 2.20 9.11 45.56 0.42 2.61 16 30 H 0.16 3.27 5.78 -52.48 -0.30 2.97 16 31 H 0.40 4.48 7.85 -40.82 -0.32 4.16 16 32 H 0.39 6.69 8.34 -40.82 -0.34 6.34 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -35.47 312.20 -7.14 -42.61 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.96 Total: 9.05 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -3.39 Total: 8.09 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.30 Total: -50.91 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.77 Total: -29.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.47 -7.14 -42.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610488968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.018 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds