Wall clock time and date at job start Tue Mar 31 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38272 * 119.88506 * 2 1 4 4 C 1.37956 * 120.22589 * 180.23330 * 3 2 1 5 5 C 1.39669 * 119.99326 * 359.52197 * 4 3 2 6 6 C 1.47737 * 120.11906 * 180.23304 * 5 4 3 7 7 O 1.21468 * 120.00072 * 179.97438 * 6 5 4 8 8 O 1.34716 * 119.99845 * 359.97438 * 6 5 4 9 9 C 1.39513 * 119.76334 * 0.24712 * 5 4 3 10 10 C 1.38615 * 119.77620 * 0.02562 * 9 5 4 11 11 N 1.39975 * 119.99609 * 179.97438 * 10 9 5 12 12 C 1.34775 * 120.00215 * 325.25395 * 11 10 9 13 13 O 1.21585 * 119.99691 * 4.51062 * 12 11 10 14 14 N 1.34773 * 120.00282 * 184.51200 * 12 11 10 15 15 C 1.46499 * 120.00522 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47527 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47137 * 90.00006 * 20 18 16 22 22 H 1.48496 * 109.47347 * 210.00048 * 20 18 16 23 23 H 1.48503 * 109.47390 * 330.00406 * 20 18 16 24 24 H 1.08998 * 109.47079 * 270.23034 * 1 2 3 25 25 H 1.09003 * 109.47254 * 30.22040 * 1 2 3 26 26 H 1.08998 * 109.47324 * 150.22839 * 1 2 3 27 27 H 1.07995 * 119.88170 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.00450 * 179.79213 * 4 3 2 29 29 H 0.96703 * 117.00038 * 180.02562 * 8 6 5 30 30 H 1.08005 * 120.10987 * 179.97438 * 9 5 4 31 31 H 0.97009 * 119.99933 * 145.25557 * 11 10 9 32 32 H 0.97007 * 119.99704 * 0.02562 * 14 12 11 33 33 H 1.09001 * 109.47103 * 300.00690 * 15 14 12 34 34 H 1.09004 * 109.46695 * 59.99843 * 15 14 12 35 35 H 0.97002 * 119.99861 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1989 0.0000 4 6 3.5754 1.2071 -0.0049 5 6 4.2808 0.0016 0.0003 6 6 5.7582 0.0072 0.0003 7 8 6.3695 -1.0424 0.0053 8 8 6.4274 1.1764 -0.0052 9 6 3.5854 -1.2078 0.0051 10 6 2.1992 -1.2048 0.0043 11 7 1.4968 -2.4155 0.0085 12 6 1.9885 -3.4823 -0.6522 13 8 3.0806 -3.4181 -1.1829 14 7 1.2699 -4.6201 -0.7247 15 6 1.8041 -5.7795 -1.4434 16 6 0.8130 -6.9127 -1.3761 17 1 -0.1216 -6.7821 -0.8509 18 6 1.0995 -8.1161 -1.9851 19 7 2.2378 -8.2752 -2.6241 20 14 -0.1288 -9.5210 -1.9011 21 1 -1.0547 -9.4389 -3.0592 22 1 0.5969 -10.8160 -1.9385 23 1 -0.9053 -9.4250 -0.6389 24 1 -0.3633 0.0041 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6521 2.1319 0.0004 28 1 4.1100 2.1456 -0.0082 29 1 7.3932 1.1295 -0.0053 30 1 4.1252 -2.1432 0.0087 31 1 0.6560 -2.4867 0.4871 32 1 0.3984 -4.6711 -0.3016 33 1 1.9795 -5.5119 -2.4854 34 1 2.7432 -6.0899 -0.9851 35 1 2.4391 -9.1217 -3.0528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610488968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:09 Heat of formation + Delta-G solvation = -126.434809 kcal Electronic energy + Delta-G solvation = -20684.116032 eV Core-core repulsion = 17259.756060 eV Total energy + Delta-G solvation = -3424.359972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93789 -41.13100 -39.63735 -37.13928 -36.35658 -35.88058 -34.39829 -33.70886 -31.00217 -29.13343 -28.54731 -25.27213 -24.44530 -23.57076 -21.96280 -21.89565 -19.91735 -19.39581 -18.73788 -18.04971 -17.33766 -16.85467 -16.69583 -16.61110 -16.16304 -16.13355 -15.47142 -15.10226 -14.75740 -14.55672 -14.38493 -14.07620 -14.04192 -13.25846 -13.05973 -12.90741 -12.74137 -12.72228 -12.61741 -12.43521 -12.22017 -11.80724 -11.52707 -11.49667 -11.14131 -10.82396 -9.99220 -9.85952 -9.12234 -8.29657 -6.46861 -0.37992 0.30344 1.42198 1.43900 1.46475 1.56638 1.64329 1.99709 2.10327 2.38450 2.75878 3.05692 3.36191 3.80493 3.87281 4.05605 4.16479 4.31836 4.48525 4.75569 4.86153 4.88741 5.02141 5.19207 5.22210 5.26081 5.28420 5.37568 5.42810 5.45717 5.53353 5.62714 5.80433 5.92028 6.12141 6.64176 6.92736 7.12513 7.23690 7.55285 8.82770 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.003728 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.289977 B = 7508.813285 C = 8559.491016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.106 4.106 4 C -0.064 4.064 5 C -0.141 4.141 6 C 0.530 3.470 7 O -0.559 6.559 8 O -0.495 6.495 9 C -0.087 4.087 10 C 0.136 3.864 11 N -0.668 5.668 12 C 0.688 3.312 13 O -0.628 6.628 14 N -0.712 5.712 15 C 0.284 3.716 16 C -0.555 4.555 17 H 0.088 0.912 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.988 3.012 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.254 1.254 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.181 0.819 28 H 0.168 0.832 29 H 0.433 0.567 30 H 0.108 0.892 31 H 0.425 0.575 32 H 0.409 0.591 33 H -0.012 1.012 34 H -0.015 1.015 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 23.484 8.653 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.070 4.070 3 C -0.124 4.124 4 C -0.082 4.082 5 C -0.143 4.143 6 C 0.376 3.624 7 O -0.451 6.451 8 O -0.308 6.308 9 C -0.108 4.108 10 C 0.041 3.959 11 N -0.319 5.319 12 C 0.388 3.612 13 O -0.509 6.509 14 N -0.365 5.365 15 C 0.161 3.839 16 C -0.592 4.592 17 H 0.106 0.894 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.177 1.177 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.199 0.801 28 H 0.185 0.815 29 H 0.294 0.706 30 H 0.126 0.874 31 H 0.265 0.735 32 H 0.245 0.755 33 H 0.006 0.994 34 H 0.003 0.997 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.526 23.053 8.056 24.836 hybrid contribution 0.359 -1.584 0.020 1.624 sum -4.167 21.469 8.076 23.313 Atomic orbital electron populations 1.20956 0.87711 1.04518 1.04440 1.20399 0.98428 0.90473 0.97673 1.21331 0.93225 0.98241 0.99578 1.21701 0.94966 0.96709 0.94865 1.18941 0.88939 0.95040 1.11374 1.21067 0.89313 0.81006 0.71040 1.90922 1.70892 1.35142 1.48165 1.84475 1.28558 1.32629 1.85156 1.21280 0.94158 0.97957 0.97422 1.17391 0.89940 0.85513 1.03049 1.42334 1.26885 1.08256 1.54385 1.16343 0.84025 0.81185 0.79649 1.90902 1.22658 1.83534 1.53805 1.45281 1.21984 1.11554 1.57728 1.18478 0.93867 0.81913 0.89658 1.21586 1.04425 0.97125 1.36110 0.89445 1.26096 0.97644 1.01937 0.93983 1.70153 1.25087 1.26705 1.35098 0.85108 0.77805 0.76578 0.79407 1.19495 1.21135 1.17726 0.88192 0.88268 0.91863 0.80138 0.81493 0.70555 0.87424 0.73541 0.75532 0.99442 0.99663 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.46 71.23 0.67 -0.69 16 2 C -0.07 -1.27 5.90 -19.69 -0.12 -1.39 16 3 C -0.11 -1.56 9.67 22.21 0.21 -1.34 16 4 C -0.06 -1.19 9.61 22.55 0.22 -0.97 16 5 C -0.14 -4.06 5.87 -20.11 -0.12 -4.18 16 6 C 0.53 15.64 8.27 70.33 0.58 16.23 16 7 O -0.56 -22.06 17.13 19.94 0.34 -21.71 16 8 O -0.49 -9.06 12.68 -56.26 -0.71 -9.77 16 9 C -0.09 -3.11 8.24 22.67 0.19 -2.93 16 10 C 0.14 3.99 6.28 38.10 0.24 4.23 16 11 N -0.67 -20.14 4.75 -317.29 -1.51 -21.64 16 12 C 0.69 29.47 8.41 179.06 1.51 30.97 16 13 O -0.63 -33.85 13.75 -3.98 -0.05 -33.91 16 14 N -0.71 -30.68 5.55 -482.31 -2.68 -33.36 16 15 C 0.28 15.92 5.43 85.63 0.46 16.39 16 16 C -0.55 -30.20 9.28 25.60 0.24 -29.97 16 17 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 20 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.70 8.08 -2.39 -0.02 0.69 16 26 H 0.06 0.86 7.15 -2.39 -0.02 0.84 16 27 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 28 H 0.17 2.06 7.61 -2.91 -0.02 2.04 16 29 H 0.43 4.08 9.11 -74.06 -0.67 3.40 16 30 H 0.11 4.99 5.78 -2.91 -0.02 4.98 16 31 H 0.43 8.90 7.85 -92.70 -0.73 8.17 16 32 H 0.41 13.99 8.34 -92.70 -0.77 13.21 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -86.16 312.20 1.25 -84.92 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -1.00 Total: 20.89 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 4.55 Total: 26.99 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.90 Total: -111.74 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -0.43 Total: -65.39 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -86.16 1.25 -84.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610488968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.516 kcal (2) G-P(sol) polarization free energy of solvation -86.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds