Wall clock time and date at job start Tue Mar 31 2020 00:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.47351 * 270.00272 * 3 2 1 5 5 H 1.48497 * 109.47025 * 30.00145 * 3 2 1 6 6 H 1.48495 * 109.47308 * 150.00529 * 3 2 1 7 7 C 1.37877 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00156 * 180.28153 * 11 10 9 14 14 C 1.39401 * 119.99992 * 174.64208 * 13 11 10 15 15 C 1.39041 * 119.69410 * 185.06310 * 14 13 11 16 16 C 1.38367 * 119.10091 * 179.77210 * 15 14 13 17 17 C 1.38830 * 118.49228 * 0.49613 * 16 15 14 18 18 C 1.38080 * 119.31377 * 359.74951 * 17 16 15 19 19 C 1.50696 * 119.57477 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47028 * 125.02438 * 19 18 17 21 21 O 1.20818 * 119.99721 * 359.97438 * 20 19 18 22 22 O 1.34230 * 119.99934 * 179.97438 * 20 19 18 23 23 N 1.31934 * 120.84636 * 0.02562 * 18 17 16 24 24 H 0.96995 * 120.00121 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47050 * 59.99854 * 9 7 2 26 26 H 1.08999 * 109.46909 * 299.99952 * 9 7 2 27 27 H 1.09008 * 109.46886 * 60.00272 * 10 9 7 28 28 H 1.08999 * 109.47205 * 300.00326 * 10 9 7 29 29 H 0.96998 * 119.99738 * 354.63564 * 13 11 10 30 30 H 1.08000 * 120.44988 * 0.03115 * 15 14 13 31 31 H 1.07996 * 120.75070 * 180.25104 * 16 15 14 32 32 H 1.07997 * 120.34569 * 179.76764 * 17 16 15 33 33 H 1.08998 * 109.47242 * 245.02251 * 19 18 17 34 34 H 1.08996 * 109.47376 * 5.02281 * 19 18 17 35 35 H 0.96695 * 117.00197 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 8 6.1350 -1.5862 -0.0026 13 7 6.2025 -3.8036 -0.0081 14 6 7.5918 -3.8057 -0.1219 15 6 8.2719 -5.0133 -0.2336 16 6 9.6506 -5.0008 -0.3508 17 6 10.3050 -3.7764 -0.3416 18 6 9.5663 -2.6160 -0.2222 19 6 10.2706 -1.2838 -0.2110 20 6 9.6935 -0.4014 -1.2878 21 8 8.8021 -0.8124 -1.9923 22 8 10.1698 0.8411 -1.4643 23 7 8.2519 -2.6586 -0.1166 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1501 0.8892 29 1 5.7207 -4.6422 0.0671 30 1 7.7311 -5.9481 -0.2332 31 1 10.2053 -5.9228 -0.4431 32 1 11.3806 -3.7320 -0.4274 33 1 10.1337 -0.8085 0.7603 34 1 11.3344 -1.4336 -0.3954 35 1 9.7683 1.3694 -2.1677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:49 Heat of formation + Delta-G solvation = -83.573505 kcal Electronic energy + Delta-G solvation = -20957.357236 eV Core-core repulsion = 17534.855870 eV Total energy + Delta-G solvation = -3422.501366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90051 -39.95443 -38.77021 -36.06763 -34.93461 -33.47946 -32.97091 -31.77598 -31.01012 -28.54885 -26.25195 -23.80355 -23.19361 -21.26316 -21.20758 -19.65624 -18.04876 -17.54273 -17.22242 -16.70730 -16.31029 -16.16660 -15.79088 -15.26820 -15.10745 -14.25711 -14.04819 -13.99520 -13.35766 -13.13720 -12.96917 -12.71259 -12.55553 -12.39559 -12.17472 -11.42557 -11.39817 -10.97834 -10.62635 -10.43375 -10.15998 -10.05010 -9.88921 -9.79333 -9.67883 -9.18091 -8.76820 -8.49775 -8.21515 -6.02121 -4.00834 0.95927 1.27883 2.33195 2.93934 3.04801 3.19153 3.39655 3.45784 3.57529 3.92231 4.05385 4.49712 4.52435 4.85161 4.93132 4.99404 5.16045 5.17174 5.25376 5.33593 5.43415 5.58696 5.83570 6.03039 6.05515 6.07525 6.23829 6.56291 6.65682 6.80382 7.36788 7.38148 7.43739 7.79352 7.97019 8.13514 8.50999 8.66159 9.00659 9.61070 11.10673 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004749 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.984445 B = 5894.268217 C = 7216.388982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.495 3.505 12 O -0.463 6.463 13 N -0.670 5.670 14 C 0.376 3.624 15 C -0.213 4.213 16 C -0.047 4.047 17 C -0.205 4.205 18 C 0.161 3.839 19 C -0.057 4.057 20 C 0.477 3.523 21 O -0.482 6.482 22 O -0.525 6.525 23 N -0.453 5.453 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.416 0.584 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.167 -9.588 -0.263 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.159 4.159 11 C 0.282 3.718 12 O -0.330 6.330 13 N -0.317 5.317 14 C 0.144 3.856 15 C -0.237 4.237 16 C -0.073 4.073 17 C -0.227 4.227 18 C 0.021 3.979 19 C -0.095 4.095 20 C 0.316 3.684 21 O -0.366 6.366 22 O -0.338 6.338 23 N -0.168 5.168 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.252 0.748 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 23.744 -8.207 -0.079 25.123 hybrid contribution 0.208 -0.085 -0.551 0.595 sum 23.953 -8.292 -0.629 25.355 Atomic orbital electron populations 1.69907 1.06276 1.26973 1.51079 1.24952 0.94693 0.99193 0.94291 0.86804 0.80613 0.83425 0.78783 1.20236 1.21419 1.18551 1.21091 0.89174 0.94595 1.51385 0.90882 1.19380 0.96492 0.90003 0.97770 1.21706 0.87095 1.03613 1.03501 1.21879 0.91586 0.82750 0.75551 1.90778 1.69855 1.30264 1.42128 1.44104 1.03378 1.11503 1.72688 1.18553 0.85410 0.89186 0.92478 1.21515 0.95486 0.97567 1.09134 1.21246 0.93475 0.98086 0.94526 1.21695 1.01017 0.92700 1.07281 1.20334 0.89101 0.93568 0.94894 1.20115 1.00138 0.90447 0.98831 1.22922 0.80599 0.80553 0.84294 1.90820 1.27206 1.73767 1.44819 1.84458 1.64088 1.27419 1.57797 1.67404 1.08192 1.27243 1.13950 0.92711 0.95769 0.96175 0.89384 0.89388 0.74796 0.84630 0.84499 0.84834 0.85878 0.86228 0.73049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 23.08 27.47 -169.99 -4.67 18.42 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.26 -6.88 6.54 56.52 0.37 -6.51 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.36 5.64 -27.88 -0.16 -2.51 16 11 C 0.50 9.64 7.79 -10.99 -0.09 9.56 16 12 O -0.46 -11.04 14.25 5.55 0.08 -10.96 16 13 N -0.67 -9.92 5.39 -11.43 -0.06 -9.98 16 14 C 0.38 5.66 7.42 -154.71 -1.15 4.51 16 15 C -0.21 -2.29 9.94 -39.24 -0.39 -2.68 16 16 C -0.05 -0.43 10.17 -39.31 -0.40 -0.83 16 17 C -0.21 -2.00 9.71 -39.42 -0.38 -2.38 16 18 C 0.16 2.12 5.76 -82.61 -0.48 1.64 16 19 C -0.06 -0.60 6.21 -29.03 -0.18 -0.78 16 20 C 0.48 6.55 8.26 36.01 0.30 6.85 16 21 O -0.48 -9.03 16.09 -18.74 -0.30 -9.33 16 22 O -0.52 -5.63 13.42 -39.26 -0.53 -6.16 16 23 N -0.45 -7.81 6.76 -8.60 -0.06 -7.87 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.02 0.64 7.16 -51.92 -0.37 0.27 16 26 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 27 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.42 4.30 8.70 -40.82 -0.36 3.94 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.13 0.83 7.94 -52.49 -0.42 0.41 16 33 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.12 0.72 7.86 -51.93 -0.41 0.32 16 35 H 0.41 3.07 9.10 45.56 0.41 3.48 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -40.75 312.58 -6.73 -47.48 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.23 Total: 1.45 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.45 Total: -0.22 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.65 Total: -45.38 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.75 Total: -26.45 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -40.75 -6.73 -47.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.096 kcal (2) G-P(sol) polarization free energy of solvation -40.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds