Wall clock time and date at job start Tue Mar 31 2020 00:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.47351 * 270.00272 * 3 2 1 5 5 H 1.48497 * 109.47025 * 30.00145 * 3 2 1 6 6 H 1.48495 * 109.47308 * 150.00529 * 3 2 1 7 7 C 1.37877 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00156 * 180.28153 * 11 10 9 14 14 C 1.39401 * 119.99992 * 174.64208 * 13 11 10 15 15 C 1.39041 * 119.69410 * 185.06310 * 14 13 11 16 16 C 1.38367 * 119.10091 * 179.77210 * 15 14 13 17 17 C 1.38830 * 118.49228 * 0.49613 * 16 15 14 18 18 C 1.38080 * 119.31377 * 359.74951 * 17 16 15 19 19 C 1.50696 * 119.57477 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47028 * 125.02438 * 19 18 17 21 21 O 1.20818 * 119.99721 * 359.97438 * 20 19 18 22 22 O 1.34230 * 119.99934 * 179.97438 * 20 19 18 23 23 N 1.31934 * 120.84636 * 0.02562 * 18 17 16 24 24 H 0.96995 * 120.00121 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47050 * 59.99854 * 9 7 2 26 26 H 1.08999 * 109.46909 * 299.99952 * 9 7 2 27 27 H 1.09008 * 109.46886 * 60.00272 * 10 9 7 28 28 H 1.08999 * 109.47205 * 300.00326 * 10 9 7 29 29 H 0.96998 * 119.99738 * 354.63564 * 13 11 10 30 30 H 1.08000 * 120.44988 * 0.03115 * 15 14 13 31 31 H 1.07996 * 120.75070 * 180.25104 * 16 15 14 32 32 H 1.07997 * 120.34569 * 179.76764 * 17 16 15 33 33 H 1.08998 * 109.47242 * 245.02251 * 19 18 17 34 34 H 1.08996 * 109.47376 * 5.02281 * 19 18 17 35 35 H 0.96695 * 117.00197 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 8 6.1350 -1.5862 -0.0026 13 7 6.2025 -3.8036 -0.0081 14 6 7.5918 -3.8057 -0.1219 15 6 8.2719 -5.0133 -0.2336 16 6 9.6506 -5.0008 -0.3508 17 6 10.3050 -3.7764 -0.3416 18 6 9.5663 -2.6160 -0.2222 19 6 10.2706 -1.2838 -0.2110 20 6 9.6935 -0.4014 -1.2878 21 8 8.8021 -0.8124 -1.9923 22 8 10.1698 0.8411 -1.4643 23 7 8.2519 -2.6586 -0.1166 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1501 0.8892 29 1 5.7207 -4.6422 0.0671 30 1 7.7311 -5.9481 -0.2332 31 1 10.2053 -5.9228 -0.4431 32 1 11.3806 -3.7320 -0.4274 33 1 10.1337 -0.8085 0.7603 34 1 11.3344 -1.4336 -0.3954 35 1 9.7683 1.3694 -2.1677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:48 Heat of formation + Delta-G solvation = -114.803381 kcal Electronic energy + Delta-G solvation = -20958.711465 eV Core-core repulsion = 17534.855870 eV Total energy + Delta-G solvation = -3423.855595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89420 -41.06304 -40.00562 -37.08322 -36.15864 -35.55066 -33.81687 -33.45240 -32.38574 -29.54111 -28.04355 -24.91846 -24.24028 -22.87503 -22.20919 -21.10836 -19.26847 -19.06754 -18.49119 -17.94141 -17.47828 -17.06925 -16.81839 -16.69889 -16.35493 -16.05281 -15.34127 -15.19658 -14.79761 -14.63369 -14.31696 -13.85346 -13.77428 -13.47100 -13.36853 -12.95540 -12.88554 -12.46927 -12.14742 -12.01268 -11.82223 -11.74808 -11.53113 -11.44623 -11.11524 -10.81757 -10.67798 -9.92120 -9.18710 -8.35231 -6.37673 0.09665 0.47003 1.28506 1.30036 1.31984 1.45909 1.71728 1.96477 2.19549 2.31145 3.00327 3.02800 3.17535 3.73547 3.95481 4.09851 4.24323 4.30994 4.37399 4.43794 4.44080 4.45978 4.56627 4.85038 4.92220 5.08269 5.27210 5.28891 5.38216 5.39932 5.56585 5.67462 5.88889 6.19307 6.28926 6.68075 7.03730 7.07656 7.27683 7.44645 8.80423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004749 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.984445 B = 5894.268217 C = 7216.388982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.007 3.993 10 C -0.112 4.112 11 C 0.499 3.501 12 O -0.518 6.518 13 N -0.655 5.655 14 C 0.329 3.671 15 C -0.200 4.200 16 C -0.046 4.046 17 C -0.186 4.186 18 C 0.126 3.874 19 C -0.056 4.056 20 C 0.475 3.525 21 O -0.542 6.542 22 O -0.516 6.516 23 N -0.508 5.508 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.001 0.999 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.434 0.566 30 H 0.168 0.832 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.128 0.872 34 H 0.169 0.831 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.283 -11.344 -0.074 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.031 4.031 10 C -0.151 4.151 11 C 0.287 3.713 12 O -0.389 6.389 13 N -0.304 5.304 14 C 0.099 3.901 15 C -0.223 4.223 16 C -0.072 4.072 17 C -0.207 4.207 18 C -0.013 4.013 19 C -0.093 4.093 20 C 0.318 3.682 21 O -0.431 6.431 22 O -0.329 6.329 23 N -0.223 5.223 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.020 0.980 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.275 0.725 30 H 0.186 0.814 31 H 0.200 0.800 32 H 0.194 0.806 33 H 0.146 0.854 34 H 0.187 0.813 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 26.904 -10.002 0.117 28.703 hybrid contribution -0.646 0.370 -0.625 0.972 sum 26.257 -9.632 -0.509 27.973 Atomic orbital electron populations 1.70004 1.07588 1.28107 1.52404 1.25727 0.95457 1.02562 0.94265 0.85886 0.79166 0.79989 0.78987 1.19713 1.19840 1.19115 1.21394 0.90933 0.93901 1.50366 0.92719 1.19197 0.94216 0.93649 0.96036 1.21517 0.88120 1.00100 1.05411 1.21592 0.91229 0.83418 0.75061 1.90758 1.70664 1.32374 1.45145 1.43650 1.04087 1.10722 1.71898 1.18929 0.85074 0.90538 0.95603 1.21896 0.96504 0.97041 1.06851 1.21856 0.92919 0.99643 0.92756 1.22212 1.02974 0.91705 1.03828 1.20861 0.88381 0.95797 0.96269 1.20372 1.02297 0.89017 0.97627 1.23692 0.79500 0.81016 0.83983 1.90798 1.29923 1.75013 1.47340 1.84444 1.63637 1.26677 1.58179 1.67217 1.10581 1.29278 1.15244 0.92276 0.97301 0.98016 0.87742 0.87183 0.72535 0.81414 0.80026 0.80626 0.85438 0.81337 0.71665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.02 1.09 5.47 84.65 0.46 1.55 16 3 Si 0.93 48.58 27.47 68.60 1.88 50.47 16 4 H -0.27 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -13.99 6.54 99.48 0.65 -13.34 16 7 C -0.53 -31.30 9.66 25.60 0.25 -31.06 16 8 H 0.05 3.37 7.99 -2.91 -0.02 3.34 16 9 C 0.01 0.37 3.33 29.85 0.10 0.47 16 10 C -0.11 -4.45 5.64 29.85 0.17 -4.28 16 11 C 0.50 19.83 7.79 87.66 0.68 20.51 16 12 O -0.52 -25.74 14.25 -3.04 -0.04 -25.78 16 13 N -0.65 -19.10 5.39 -308.45 -1.66 -20.76 16 14 C 0.33 9.65 7.42 132.92 0.99 10.63 16 15 C -0.20 -3.66 9.94 22.49 0.22 -3.43 16 16 C -0.05 -0.62 10.17 22.44 0.23 -0.39 16 17 C -0.19 -2.88 9.71 22.37 0.22 -2.66 16 18 C 0.13 3.12 5.76 42.50 0.24 3.36 16 19 C -0.06 -1.08 6.21 29.10 0.18 -0.90 16 20 C 0.48 13.05 8.26 71.24 0.59 13.64 16 21 O -0.54 -21.10 16.09 21.99 0.35 -20.75 16 22 O -0.52 -10.78 13.42 -51.41 -0.69 -11.47 16 23 N -0.51 -17.56 6.76 -181.12 -1.22 -18.78 16 24 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.01 0.48 7.16 -2.38 -0.02 0.46 16 26 H 0.00 0.08 7.53 -2.39 -0.02 0.06 16 27 H 0.10 3.78 8.14 -2.38 -0.02 3.76 16 28 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.43 8.38 8.70 -92.71 -0.81 7.57 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.18 1.13 7.94 -2.91 -0.02 1.10 16 33 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.17 1.39 7.86 -2.39 -0.02 1.37 16 35 H 0.42 6.31 9.10 -74.06 -0.67 5.63 16 Total: -1.00 -94.00 312.58 2.86 -91.14 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -0.39 Total: 7.99 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.33 Total: 7.45 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -2.59 Total: -99.05 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.38 Total: -58.00 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.88 Total: 50.47 kcal Total: -94.00 2.86 -91.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.659 kcal (2) G-P(sol) polarization free energy of solvation -94.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds