Wall clock time and date at job start Tue Mar 31 2020 00:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99644 * 2 1 4 4 H 1.48502 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47074 * 300.00187 * 3 2 1 6 6 H 1.48510 * 109.47081 * 60.00063 * 3 2 1 7 7 C 1.40020 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00576 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.40587 * 119.78343 * 179.97438 * 9 7 2 11 11 C 1.38357 * 119.14637 * 179.97438 * 10 9 7 12 12 C 1.38637 * 118.68097 * 0.02562 * 11 10 9 13 13 C 1.39755 * 119.49071 * 359.97438 * 12 11 10 14 14 N 1.38822 * 119.58430 * 179.97438 * 13 12 11 15 15 C 1.47013 * 111.00139 * 303.63963 * 14 13 12 16 16 C 1.53103 * 109.25987 * 177.60976 * 15 14 13 17 17 O 1.43091 * 109.28277 * 56.84871 * 16 15 14 18 18 C 1.43020 * 113.68830 * 301.35605 * 17 16 15 19 19 H 1.09002 * 109.50941 * 298.69500 * 18 17 16 20 20 C 1.50702 * 109.50740 * 178.60719 * 18 17 16 21 21 O 1.20823 * 119.99707 * 355.08803 * 20 18 17 22 22 O 1.34227 * 119.99868 * 175.08950 * 20 18 17 23 23 C 1.47016 * 111.00436 * 180.02562 * 14 13 12 24 24 N 1.31980 * 120.83599 * 0.25831 * 13 12 11 25 25 H 0.96994 * 120.00463 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.43114 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65869 * 179.97438 * 11 10 9 28 28 H 1.07997 * 120.25622 * 179.97438 * 12 11 10 29 29 H 1.09000 * 109.50641 * 297.53924 * 15 14 13 30 30 H 1.08997 * 109.51027 * 57.62581 * 15 14 13 31 31 H 1.08995 * 109.50599 * 176.78096 * 16 15 14 32 32 H 1.08998 * 109.50434 * 296.86490 * 16 15 14 33 33 H 0.96701 * 116.99643 * 180.02562 * 22 20 18 34 34 H 1.09008 * 109.50469 * 62.45823 * 23 14 13 35 35 H 1.09003 * 109.54191 * 302.35232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2126 7 6 2.0077 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3012 -2.4364 0.0005 10 6 2.0088 -3.6513 0.0005 11 6 1.3038 -4.8417 0.0011 12 6 -0.0818 -4.7945 0.0011 13 6 -0.7279 -3.5553 0.0010 14 7 -2.1153 -3.5057 0.0005 15 6 -2.6685 -4.2465 -1.1425 16 6 -4.1976 -4.2166 -1.0714 17 8 -4.6427 -2.8570 -1.0408 18 6 -4.1226 -2.1068 0.0603 19 1 -4.4529 -2.5575 0.9962 20 6 -4.6214 -0.6869 -0.0179 21 8 -5.2742 -0.3274 -0.9690 22 8 -4.3404 0.1785 0.9689 23 6 -2.5929 -2.1153 0.0000 24 7 -0.0359 -2.4315 -0.0041 25 1 -0.4850 0.8400 0.0004 26 1 3.0887 -3.6552 0.0001 27 1 1.8225 -5.7890 0.0007 28 1 -0.6574 -5.7083 0.0011 29 1 -2.3383 -3.7819 -2.0716 30 1 -2.3220 -5.2794 -1.1090 31 1 -4.6125 -4.7155 -1.9472 32 1 -4.5300 -4.7293 -0.1688 33 1 -4.6823 1.0781 0.8745 34 1 -2.2614 -1.6170 -0.9111 35 1 -2.1918 -1.5917 0.8678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611295831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:24 Heat of formation + Delta-G solvation = -78.954085 kcal Electronic energy + Delta-G solvation = -22102.648395 eV Core-core repulsion = 18680.347341 eV Total energy + Delta-G solvation = -3422.301053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43376 -39.27591 -37.92364 -35.94662 -35.14000 -33.46689 -31.54445 -30.47176 -29.68691 -27.05198 -25.85611 -24.18911 -22.46396 -21.35257 -20.75548 -19.88473 -18.06229 -17.59906 -16.95589 -15.93416 -15.89412 -15.71293 -15.03968 -14.64456 -14.55186 -14.37247 -14.30855 -13.72943 -13.43386 -12.93339 -12.58551 -12.10033 -11.96588 -11.65773 -11.33662 -11.27506 -11.09411 -11.03793 -10.82335 -10.73706 -10.53984 -10.17544 -10.02740 -9.72084 -9.42500 -8.81785 -8.12927 -7.71519 -7.12399 -6.50132 -4.59797 2.33535 2.63331 2.75092 2.92383 3.05448 3.09136 3.14699 3.89183 4.06351 4.43005 4.69167 5.01952 5.15820 5.24666 5.28934 5.41609 5.58114 5.76400 5.85735 6.02154 6.04076 6.28435 6.38537 6.53008 6.61208 6.68846 6.71533 6.90759 7.04505 7.10589 7.29713 7.54908 7.68939 7.69446 8.06518 8.08060 8.24580 8.61779 8.89052 9.97383 10.22341 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.007805 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.868919 B = 3586.569471 C = 5326.379092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.428 4.428 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.291 4.291 11 C -0.044 4.044 12 C -0.319 4.319 13 C 0.319 3.681 14 N -0.477 5.477 15 C 0.023 3.977 16 C 0.068 3.932 17 O -0.367 6.367 18 C 0.097 3.903 19 H 0.100 0.900 20 C 0.496 3.504 21 O -0.504 6.504 22 O -0.504 6.504 23 C 0.059 3.941 24 N -0.507 5.507 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -2.395 0.935 7.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.103 0.897 9 C 0.148 3.852 10 C -0.314 4.314 11 C -0.069 4.069 12 C -0.344 4.344 13 C 0.081 3.919 14 N -0.197 5.197 15 C -0.105 4.105 16 C -0.008 4.008 17 O -0.286 6.286 18 C 0.038 3.962 19 H 0.117 0.883 20 C 0.336 3.664 21 O -0.390 6.390 22 O -0.316 6.316 23 C -0.068 4.068 24 N -0.225 5.225 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.651 -1.887 0.986 7.941 hybrid contribution 1.067 0.667 -0.503 1.355 sum -6.584 -1.220 0.483 6.713 Atomic orbital electron populations 1.70090 1.07164 1.27579 1.28825 1.26037 0.94924 1.01028 0.93412 0.86288 0.80883 0.81201 0.78563 1.18427 1.19903 1.19782 1.19638 0.94305 0.89296 1.42744 0.89739 1.18325 0.87242 0.92049 0.87597 1.21662 0.98698 0.93435 1.17630 1.20706 0.93530 0.96649 0.96003 1.20642 0.94316 0.95674 1.23742 1.19689 0.87522 0.90754 0.93945 1.59429 1.06883 1.13763 1.39589 1.22845 0.95000 1.00236 0.92382 1.22791 0.93194 0.82138 1.02701 1.88009 1.70480 1.23140 1.46926 1.21585 0.95887 0.86702 0.92018 0.88263 1.22729 0.76365 0.87826 0.79446 1.90703 1.36827 1.78549 1.32948 1.84528 1.73640 1.25789 1.47606 1.22326 0.88531 0.89682 1.06308 1.68612 1.08070 1.24719 1.21087 0.91768 0.88356 0.88450 0.88596 0.93275 0.88871 0.87746 0.91918 0.73010 0.91436 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.91 11.46 55.55 0.64 -17.27 16 2 C 0.07 1.74 5.50 -17.35 -0.10 1.65 16 3 Si 0.91 18.14 29.56 -169.99 -5.02 13.12 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.43 -11.10 9.14 -37.74 -0.34 -11.44 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 9 C 0.27 7.27 6.55 -84.99 -0.56 6.72 16 10 C -0.29 -7.01 9.83 -38.65 -0.38 -7.39 16 11 C -0.04 -0.97 10.15 -39.39 -0.40 -1.37 16 12 C -0.32 -6.99 9.24 -38.87 -0.36 -7.35 16 13 C 0.32 7.46 6.41 -155.32 -1.00 6.46 16 14 N -0.48 -9.51 4.75 -172.86 -0.82 -10.33 16 15 C 0.02 0.38 5.39 -3.71 -0.02 0.36 16 16 C 0.07 0.94 7.01 37.21 0.26 1.20 16 17 O -0.37 -6.25 10.02 -55.11 -0.55 -6.80 16 18 C 0.10 1.64 3.33 -27.83 -0.09 1.55 16 19 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 20 C 0.50 8.29 7.66 36.01 0.28 8.57 16 21 O -0.50 -9.72 17.27 -25.45 -0.44 -10.16 16 22 O -0.50 -6.90 13.42 -39.25 -0.53 -7.43 16 23 C 0.06 1.19 4.08 -3.71 -0.02 1.17 16 24 N -0.51 -13.24 6.18 -10.33 -0.06 -13.30 16 25 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 26 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.10 1.86 7.18 -52.49 -0.38 1.48 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.39 6.81 -51.93 -0.35 1.04 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.41 3.61 9.10 45.56 0.41 4.02 16 34 H 0.07 1.56 8.02 -51.92 -0.42 1.14 16 35 H 0.12 2.54 7.86 -51.93 -0.41 2.13 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -31.00 302.03 -8.18 -39.19 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.22 Total: 8.32 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.72 Total: 0.12 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.25 Total: -40.90 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.52 Total: -24.39 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.00 -8.18 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611295831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.767 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds