Wall clock time and date at job start Tue Mar 31 2020 00:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99644 * 2 1 4 4 H 1.48502 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47074 * 300.00187 * 3 2 1 6 6 H 1.48510 * 109.47081 * 60.00063 * 3 2 1 7 7 C 1.40020 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00576 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.40587 * 119.78343 * 179.97438 * 9 7 2 11 11 C 1.38357 * 119.14637 * 179.97438 * 10 9 7 12 12 C 1.38637 * 118.68097 * 0.02562 * 11 10 9 13 13 C 1.39755 * 119.49071 * 359.97438 * 12 11 10 14 14 N 1.38822 * 119.58430 * 179.97438 * 13 12 11 15 15 C 1.47013 * 111.00139 * 303.63963 * 14 13 12 16 16 C 1.53103 * 109.25987 * 177.60976 * 15 14 13 17 17 O 1.43091 * 109.28277 * 56.84871 * 16 15 14 18 18 C 1.43020 * 113.68830 * 301.35605 * 17 16 15 19 19 H 1.09002 * 109.50941 * 298.69500 * 18 17 16 20 20 C 1.50702 * 109.50740 * 178.60719 * 18 17 16 21 21 O 1.20823 * 119.99707 * 355.08803 * 20 18 17 22 22 O 1.34227 * 119.99868 * 175.08950 * 20 18 17 23 23 C 1.47016 * 111.00436 * 180.02562 * 14 13 12 24 24 N 1.31980 * 120.83599 * 0.25831 * 13 12 11 25 25 H 0.96994 * 120.00463 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.43114 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65869 * 179.97438 * 11 10 9 28 28 H 1.07997 * 120.25622 * 179.97438 * 12 11 10 29 29 H 1.09000 * 109.50641 * 297.53924 * 15 14 13 30 30 H 1.08997 * 109.51027 * 57.62581 * 15 14 13 31 31 H 1.08995 * 109.50599 * 176.78096 * 16 15 14 32 32 H 1.08998 * 109.50434 * 296.86490 * 16 15 14 33 33 H 0.96701 * 116.99643 * 180.02562 * 22 20 18 34 34 H 1.09008 * 109.50469 * 62.45823 * 23 14 13 35 35 H 1.09003 * 109.54191 * 302.35232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2126 7 6 2.0077 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3012 -2.4364 0.0005 10 6 2.0088 -3.6513 0.0005 11 6 1.3038 -4.8417 0.0011 12 6 -0.0818 -4.7945 0.0011 13 6 -0.7279 -3.5553 0.0010 14 7 -2.1153 -3.5057 0.0005 15 6 -2.6685 -4.2465 -1.1425 16 6 -4.1976 -4.2166 -1.0714 17 8 -4.6427 -2.8570 -1.0408 18 6 -4.1226 -2.1068 0.0603 19 1 -4.4529 -2.5575 0.9962 20 6 -4.6214 -0.6869 -0.0179 21 8 -5.2742 -0.3274 -0.9690 22 8 -4.3404 0.1785 0.9689 23 6 -2.5929 -2.1153 0.0000 24 7 -0.0359 -2.4315 -0.0041 25 1 -0.4850 0.8400 0.0004 26 1 3.0887 -3.6552 0.0001 27 1 1.8225 -5.7890 0.0007 28 1 -0.6574 -5.7083 0.0011 29 1 -2.3383 -3.7819 -2.0716 30 1 -2.3220 -5.2794 -1.1090 31 1 -4.6125 -4.7155 -1.9472 32 1 -4.5300 -4.7293 -0.1688 33 1 -4.6823 1.0781 0.8745 34 1 -2.2614 -1.6170 -0.9111 35 1 -2.1918 -1.5917 0.8678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611295831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:23 Heat of formation + Delta-G solvation = -100.170401 kcal Electronic energy + Delta-G solvation = -22103.568403 eV Core-core repulsion = 18680.347341 eV Total energy + Delta-G solvation = -3423.221062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80693 -40.78153 -39.48007 -37.25801 -36.67783 -35.25803 -32.95884 -32.21077 -31.40950 -28.56124 -27.57062 -25.73691 -23.85474 -23.10533 -22.27410 -21.39079 -19.56453 -19.15062 -18.45666 -17.42405 -17.17977 -17.17529 -16.65054 -16.26059 -16.13889 -15.94003 -15.78887 -15.05124 -15.00669 -14.60356 -14.03530 -13.81205 -13.55746 -13.03850 -12.89786 -12.77155 -12.65674 -12.60856 -12.55481 -12.25080 -11.98906 -11.78693 -11.48459 -11.35639 -10.94744 -10.47672 -9.94961 -9.54757 -8.89321 -8.31028 -6.50913 0.85127 0.99829 1.16842 1.39750 1.50707 1.53455 1.56838 2.21259 2.58983 2.85705 3.14087 3.61337 3.84710 3.87315 3.97081 4.09061 4.21307 4.30474 4.47000 4.49953 4.64104 4.78555 4.85618 4.86627 4.92559 5.01210 5.19694 5.23225 5.46268 5.57903 5.80057 5.89169 5.91533 5.93692 6.25145 6.41855 6.76830 6.90416 7.02180 8.13791 8.42418 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.007805 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.868919 B = 3586.569471 C = 5326.379092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.028 3.972 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.239 3.761 10 C -0.315 4.315 11 C -0.041 4.041 12 C -0.315 4.315 13 C 0.299 3.701 14 N -0.472 5.472 15 C 0.021 3.979 16 C 0.070 3.930 17 O -0.383 6.383 18 C 0.104 3.896 19 H 0.127 0.873 20 C 0.500 3.500 21 O -0.533 6.533 22 O -0.498 6.498 23 C 0.078 3.922 24 N -0.534 5.534 25 H 0.276 0.724 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.024 0.976 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.433 0.567 34 H 0.026 0.974 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 -3.449 1.288 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.194 4.194 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.338 4.338 11 C -0.066 4.066 12 C -0.340 4.340 13 C 0.061 3.939 14 N -0.192 5.192 15 C -0.105 4.105 16 C -0.006 4.006 17 O -0.302 6.302 18 C 0.045 3.955 19 H 0.144 0.856 20 C 0.342 3.658 21 O -0.423 6.423 22 O -0.312 6.312 23 C -0.051 4.051 24 N -0.253 5.253 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.043 0.957 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.295 0.705 34 H 0.045 0.955 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.439 -2.954 1.353 9.043 hybrid contribution 1.276 0.870 -0.597 1.656 sum -7.163 -2.084 0.756 7.498 Atomic orbital electron populations 1.70193 1.08479 1.28602 1.29256 1.26863 0.95774 1.04097 0.92659 0.85171 0.79499 0.76493 0.78639 1.17962 1.19597 1.19000 1.19940 0.94638 0.90367 1.44657 0.89574 1.18801 0.88023 0.93392 0.88460 1.21846 0.99339 0.93736 1.18884 1.21132 0.93757 0.97461 0.94208 1.21031 0.94746 0.96231 1.21985 1.20234 0.89086 0.90969 0.93602 1.59515 1.05168 1.13667 1.40806 1.23031 0.97137 1.00434 0.89924 1.23081 0.90823 0.81048 1.05619 1.88012 1.70362 1.24719 1.47097 1.21532 0.93263 0.87397 0.93339 0.85563 1.22733 0.75660 0.88126 0.79268 1.90688 1.38385 1.79083 1.34104 1.84488 1.73219 1.27094 1.46397 1.21966 0.90837 0.89327 1.02954 1.68587 1.08231 1.26408 1.22027 0.91382 0.87549 0.84614 0.85444 0.95732 0.86693 0.84406 0.89338 0.70486 0.95511 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.66 11.46 21.84 0.25 -38.41 16 2 C 0.03 1.43 5.50 85.29 0.47 1.90 16 3 Si 0.98 37.94 29.56 68.60 2.03 39.97 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.46 -24.95 9.14 23.46 0.21 -24.73 16 8 H 0.09 4.37 7.85 -2.91 -0.02 4.35 16 9 C 0.24 13.13 6.55 40.19 0.26 13.39 16 10 C -0.32 -15.30 9.83 22.87 0.22 -15.08 16 11 C -0.04 -1.74 10.15 22.39 0.23 -1.52 16 12 C -0.32 -13.28 9.24 22.73 0.21 -13.07 16 13 C 0.30 14.01 6.41 133.40 0.85 14.86 16 14 N -0.47 -18.55 4.75 -700.80 -3.33 -21.88 16 15 C 0.02 0.67 5.39 86.32 0.47 1.14 16 16 C 0.07 1.72 7.01 72.02 0.50 2.22 16 17 O -0.38 -12.41 10.02 -129.98 -1.30 -13.71 16 18 C 0.10 3.41 3.33 29.88 0.10 3.51 16 19 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 20 C 0.50 16.51 7.66 71.24 0.55 17.05 16 21 O -0.53 -20.45 17.27 28.39 0.49 -19.96 16 22 O -0.50 -13.27 13.42 -51.39 -0.69 -13.96 16 23 C 0.08 3.16 4.08 86.31 0.35 3.51 16 24 N -0.53 -28.76 6.18 -186.59 -1.15 -29.92 16 25 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 26 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.13 4.48 7.18 -2.91 -0.02 4.46 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 3.08 6.81 -2.39 -0.02 3.06 16 31 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.43 7.12 9.10 -74.06 -0.67 6.44 16 34 H 0.03 1.29 8.02 -2.38 -0.02 1.27 16 35 H 0.09 4.05 7.86 -2.39 -0.02 4.03 16 Total: -1.00 -69.62 302.03 1.18 -68.44 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.46 Total: 26.25 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.43 Total: 3.18 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -4.23 Total: -90.20 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.50 Total: -47.63 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -69.62 1.18 -68.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611295831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.727 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds