Wall clock time and date at job start Tue Mar 31 2020 00:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48506 * 109.47024 * 269.99895 * 3 2 1 5 5 H 1.48489 * 109.47207 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00310 * 3 2 1 7 7 C 1.40034 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.41313 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.40595 * 119.78089 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14426 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39760 * 119.49120 * 359.45190 * 12 11 10 14 14 N 1.38823 * 119.58258 * 180.28342 * 13 12 11 15 15 C 1.47016 * 111.00463 * 56.63843 * 14 13 12 16 16 C 1.53096 * 109.25928 * 182.39204 * 15 14 13 17 17 O 1.43014 * 109.25928 * 303.14981 * 16 15 14 18 18 C 1.43018 * 113.73435 * 58.67339 * 17 16 15 19 19 H 1.08994 * 109.50868 * 61.26621 * 18 17 16 20 20 C 1.50703 * 109.50358 * 181.39101 * 18 17 16 21 21 O 1.20827 * 120.00263 * 4.78516 * 20 18 17 22 22 O 1.34233 * 120.00077 * 184.77756 * 20 18 17 23 23 C 1.47010 * 111.00039 * 180.27297 * 14 13 12 24 24 N 1.31977 * 120.83137 * 0.55630 * 13 12 11 25 25 H 0.97005 * 119.99873 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.42621 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 28 28 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 29 29 H 1.09001 * 109.50652 * 302.33286 * 15 14 13 30 30 H 1.09000 * 109.50348 * 62.45889 * 15 14 13 31 31 H 1.09002 * 109.50516 * 183.21489 * 16 15 14 32 32 H 1.08999 * 109.54038 * 63.10822 * 16 15 14 33 33 H 0.96698 * 116.99857 * 180.02562 * 22 20 18 34 34 H 1.08994 * 109.50865 * 297.54073 * 23 14 13 35 35 H 1.09000 * 109.50855 * 57.67426 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4365 -0.0005 10 6 2.0084 -3.6515 -0.0005 11 6 1.3033 -4.8418 -0.0011 12 6 -0.0822 -4.7944 -0.0075 13 6 -0.7283 -3.5551 -0.0016 14 7 -2.1156 -3.5055 -0.0021 15 6 -2.6698 -4.2467 1.1402 16 6 -4.1988 -4.2166 1.0679 17 8 -4.6429 -2.8575 1.0375 18 6 -4.1228 -2.1064 -0.0628 19 1 -4.4524 -2.5567 -0.9991 20 6 -4.6216 -0.6866 0.0166 21 8 -5.2765 -0.3285 0.9668 22 8 -4.3383 0.1805 -0.9682 23 6 -2.5931 -2.1151 -0.0019 24 7 -0.0361 -2.4315 -0.0010 25 1 -0.4850 0.8401 -0.0004 26 1 3.0884 -3.6554 -0.0010 27 1 1.8220 -5.7891 -0.0015 28 1 -0.6579 -5.7082 -0.0129 29 1 -2.3240 -5.2798 1.1061 30 1 -2.3402 -3.7824 2.0697 31 1 -4.6144 -4.7159 1.9431 32 1 -4.5311 -4.7285 0.1648 33 1 -4.6796 1.0802 -0.8726 34 1 -2.2623 -1.6168 0.9093 35 1 -2.1914 -1.5922 -0.8698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611295832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:26 Heat of formation + Delta-G solvation = -100.158116 kcal Electronic energy + Delta-G solvation = -22103.714000 eV Core-core repulsion = 18680.493471 eV Total energy + Delta-G solvation = -3423.220529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80777 -40.78058 -39.48382 -37.25729 -36.67864 -35.25793 -32.96041 -32.21169 -31.40925 -28.55966 -27.56805 -25.73723 -23.85554 -23.10430 -22.27435 -21.38951 -19.56317 -19.14962 -18.45572 -17.42291 -17.18229 -17.17503 -16.65153 -16.25812 -16.13649 -15.94477 -15.79151 -15.04997 -15.00548 -14.59945 -14.03708 -13.81066 -13.55688 -13.03687 -12.88327 -12.77774 -12.65897 -12.60364 -12.55665 -12.25448 -11.98984 -11.80479 -11.48729 -11.34631 -10.94321 -10.47912 -9.94766 -9.54562 -8.89009 -8.30848 -6.50834 0.85609 0.99788 1.17175 1.39733 1.50681 1.53178 1.56852 2.21347 2.58903 2.85834 3.14051 3.61337 3.84767 3.87398 3.97083 4.09191 4.21341 4.30461 4.47013 4.50124 4.64169 4.78616 4.85648 4.86660 4.92621 5.01289 5.19768 5.23142 5.46308 5.58124 5.80085 5.89276 5.91770 5.93746 6.25029 6.41852 6.76836 6.90394 7.02226 8.13957 8.42450 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.007805 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.697456 B = 3586.631114 C = 5326.623055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.029 3.971 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.240 3.760 10 C -0.316 4.316 11 C -0.041 4.041 12 C -0.315 4.315 13 C 0.299 3.701 14 N -0.472 5.472 15 C 0.021 3.979 16 C 0.070 3.930 17 O -0.383 6.383 18 C 0.104 3.896 19 H 0.127 0.873 20 C 0.500 3.500 21 O -0.533 6.533 22 O -0.498 6.498 23 C 0.078 3.922 24 N -0.534 5.534 25 H 0.276 0.724 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.024 0.976 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.433 0.567 34 H 0.026 0.974 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -3.422 -1.266 8.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.194 4.194 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.338 4.338 11 C -0.066 4.066 12 C -0.340 4.340 13 C 0.061 3.939 14 N -0.192 5.192 15 C -0.105 4.105 16 C -0.006 4.006 17 O -0.302 6.302 18 C 0.045 3.955 19 H 0.144 0.856 20 C 0.342 3.658 21 O -0.423 6.423 22 O -0.312 6.312 23 C -0.051 4.051 24 N -0.253 5.253 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.133 0.867 30 H 0.043 0.957 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.295 0.705 34 H 0.045 0.955 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.451 -2.927 -1.333 9.042 hybrid contribution 1.288 0.863 0.588 1.658 sum -7.163 -2.063 -0.745 7.491 Atomic orbital electron populations 1.70189 1.08479 1.28659 1.29171 1.26865 0.95777 1.04088 0.92659 0.85218 0.79010 0.76172 0.79393 1.18694 1.19594 1.18245 1.19916 0.94646 0.90380 1.44723 0.89564 1.18791 0.88020 0.93380 0.88463 1.21847 0.99338 0.93737 1.18906 1.21130 0.93757 0.97460 0.94215 1.21028 0.94743 0.96230 1.22007 1.20234 0.89084 0.90968 0.93594 1.59507 1.05148 1.13663 1.40848 1.23031 0.97140 1.00421 0.89935 1.23071 0.90826 0.81052 1.05613 1.87992 1.70369 1.24689 1.47143 1.21531 0.93261 0.87381 0.93348 0.85560 1.22735 0.75679 0.88123 0.79249 1.90690 1.38322 1.79155 1.34094 1.84488 1.73181 1.27010 1.46518 1.21965 0.90842 0.89322 1.02949 1.68574 1.08227 1.26404 1.22058 0.91371 0.87548 0.84621 0.85455 0.86703 0.95718 0.84399 0.89355 0.70488 0.95520 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.64 11.46 21.84 0.25 -38.39 16 2 C 0.03 1.43 5.50 85.29 0.47 1.90 16 3 Si 0.98 37.92 29.56 68.60 2.03 39.94 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.47 -24.98 9.14 23.46 0.21 -24.77 16 8 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 9 C 0.24 13.14 6.55 40.19 0.26 13.40 16 10 C -0.32 -15.32 9.83 22.87 0.22 -15.09 16 11 C -0.04 -1.75 10.15 22.39 0.23 -1.52 16 12 C -0.32 -13.30 9.24 22.73 0.21 -13.09 16 13 C 0.30 14.01 6.40 133.40 0.85 14.87 16 14 N -0.47 -18.56 4.75 -700.83 -3.33 -21.89 16 15 C 0.02 0.67 5.40 86.31 0.47 1.14 16 16 C 0.07 1.72 7.01 72.01 0.50 2.22 16 17 O -0.38 -12.40 10.01 -129.98 -1.30 -13.71 16 18 C 0.10 3.41 3.33 29.88 0.10 3.51 16 19 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 20 C 0.50 16.51 7.66 71.24 0.55 17.05 16 21 O -0.53 -20.45 17.27 28.37 0.49 -19.96 16 22 O -0.50 -13.28 13.42 -51.44 -0.69 -13.97 16 23 C 0.08 3.16 4.08 86.31 0.35 3.51 16 24 N -0.53 -28.77 6.18 -186.59 -1.15 -29.93 16 25 H 0.28 13.12 8.29 -92.70 -0.77 12.35 16 26 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.13 4.49 7.19 -2.91 -0.02 4.46 16 29 H 0.11 3.08 6.82 -2.39 -0.02 3.06 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.43 7.13 9.10 -74.06 -0.67 6.45 16 34 H 0.03 1.29 8.02 -2.39 -0.02 1.27 16 35 H 0.09 4.06 7.85 -2.39 -0.02 4.04 16 Total: -1.00 -69.58 302.05 1.18 -68.40 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.45 Total: 26.35 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 4.43 Total: 3.15 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -4.23 Total: -90.20 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.50 Total: -47.64 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.94 kcal Total: -69.58 1.18 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611295832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.760 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds