Wall clock time and date at job start Mon Mar 30 2020 23:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86791 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47690 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47328 * 120.00622 * 3 2 1 6 6 H 1.48504 * 109.47177 * 239.99835 * 3 2 1 7 7 C 1.40277 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99602 * 160.94300 * 7 2 1 9 9 C 1.40892 * 119.99993 * 340.94173 * 7 2 1 10 10 C 1.40709 * 120.32698 * 325.84525 * 9 7 2 11 11 C 1.37600 * 119.88058 * 180.02562 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.68006 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09197 * 359.71249 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.28466 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47087 * 179.97438 * 18 17 15 20 20 H 1.09004 * 109.47497 * 305.00182 * 19 18 17 21 21 O 1.42901 * 109.47110 * 65.00157 * 19 18 17 22 22 C 1.50703 * 109.47238 * 185.00092 * 19 18 17 23 23 N 1.34767 * 119.99865 * 64.99833 * 22 19 18 24 24 O 1.21286 * 119.99767 * 245.00464 * 22 19 18 25 25 H 0.96993 * 120.00043 * 174.76075 * 1 2 3 26 26 H 1.07999 * 120.06050 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.65714 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.95779 * 180.02562 * 13 12 11 30 30 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 31 31 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 32 32 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 33 33 H 0.96698 * 114.00345 * 59.99550 * 21 19 18 34 34 H 0.96998 * 120.00224 * 0.02562 * 23 22 19 35 35 H 0.97005 * 119.99700 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0077 -1.2149 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3973 10 6 0.3813 -2.3729 1.4069 11 6 -0.2441 -3.5376 1.7887 12 6 0.0833 -4.7449 1.1864 13 6 1.0421 -4.8000 0.1925 14 6 1.6877 -3.6374 -0.2200 15 6 2.7066 -3.6905 -1.2842 16 8 3.2286 -2.6650 -1.6779 17 7 3.0597 -4.8753 -1.8208 18 6 4.0726 -4.9281 -2.8778 19 6 4.2862 -6.3809 -3.3075 20 1 4.5364 -6.9848 -2.4352 21 8 3.0889 -6.8815 -3.9059 22 6 5.4131 -6.4490 -4.3057 23 7 6.6658 -6.1225 -3.9311 24 8 5.1927 -6.7977 -5.4463 25 1 -0.4850 -0.8365 -0.0767 26 1 0.1211 -1.4385 1.8818 27 1 -0.9953 -3.5125 2.5641 28 1 -0.4165 -5.6502 1.4978 29 1 1.2874 -5.7454 -0.2684 30 1 2.6436 -5.6933 -1.5065 31 1 3.7363 -4.3416 -3.7328 32 1 5.0107 -4.5188 -2.5028 33 1 2.8059 -6.3908 -4.6895 34 1 6.8421 -5.8439 -3.0188 35 1 7.3911 -6.1660 -4.5737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618758945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:14 Heat of formation + Delta-G solvation = -142.854477 kcal Electronic energy + Delta-G solvation = -21111.317885 eV Core-core repulsion = 17686.245903 eV Total energy + Delta-G solvation = -3425.071982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25386 -40.58328 -38.84189 -37.67796 -35.95512 -35.32198 -34.66094 -32.08023 -31.28604 -30.09037 -27.18392 -25.53053 -23.76236 -22.70536 -22.06186 -21.12696 -19.98358 -19.17364 -18.38813 -18.15802 -17.05551 -16.80073 -16.61165 -16.34184 -15.98061 -15.78283 -15.48054 -15.34205 -15.03857 -14.84954 -14.38077 -13.92099 -13.85396 -13.40480 -13.02717 -12.88899 -12.68357 -12.48253 -12.03299 -11.98959 -11.89281 -11.47322 -10.97275 -10.92781 -10.78398 -10.34746 -10.06554 -9.59897 -9.47735 -9.08665 -6.44966 0.41099 0.92630 1.32662 1.48084 1.63325 1.77676 2.15396 2.25020 2.32381 2.58996 2.75862 3.24529 3.50137 3.57658 3.87407 3.90105 4.22995 4.29409 4.44207 4.54495 4.64696 4.82939 4.89882 5.15635 5.44499 5.49674 5.66520 5.72464 5.77241 5.90771 5.98260 6.21025 6.21956 6.34959 6.46994 6.67356 6.86235 6.92580 7.15891 7.58348 8.06055 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.004836 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.179286 B = 5789.098017 C = 6960.765969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.003 4.003 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.072 4.072 12 C -0.245 4.245 13 C -0.040 4.040 14 C -0.284 4.284 15 C 0.560 3.440 16 O -0.577 6.577 17 N -0.720 5.720 18 C 0.101 3.899 19 C 0.094 3.906 20 H 0.160 0.840 21 O -0.546 6.546 22 C 0.497 3.503 23 N -0.828 5.828 24 O -0.580 6.580 25 H 0.282 0.718 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.410 0.590 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.392 0.608 34 H 0.419 0.581 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -10.825 -1.766 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.219 4.219 3 Si 0.933 3.067 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.102 0.898 9 C 0.092 3.908 10 C -0.246 4.246 11 C -0.091 4.091 12 C -0.264 4.264 13 C -0.059 4.059 14 C -0.289 4.289 15 C 0.353 3.647 16 O -0.458 6.458 17 N -0.376 5.376 18 C -0.024 4.024 19 C 0.031 3.969 20 H 0.177 0.823 21 O -0.352 6.352 22 C 0.280 3.720 23 N -0.394 5.394 24 O -0.460 6.460 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.247 0.753 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.242 0.758 34 H 0.251 0.749 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.000 -9.140 -2.194 13.014 hybrid contribution 0.143 -1.316 -0.292 1.355 sum 9.143 -10.456 -2.486 14.110 Atomic orbital electron populations 1.70500 1.08704 1.33110 1.31991 1.28467 0.95825 1.07435 0.90145 0.83019 0.74779 0.70078 0.78815 1.19138 1.18246 1.19603 1.21118 1.01146 0.93475 1.38040 0.89799 1.17894 0.90363 0.93011 0.89502 1.21214 1.04247 0.97754 1.01366 1.21157 0.97232 0.92685 0.98009 1.20814 1.04502 0.97604 1.03480 1.21168 0.93777 0.96028 0.94902 1.19776 1.08459 0.95791 1.04825 1.18365 0.81775 0.82842 0.81671 1.90672 1.56481 1.34821 1.63846 1.45573 1.43321 1.08864 1.39813 1.21834 0.93530 0.95781 0.91260 1.22117 0.84193 0.94855 0.95701 0.82254 1.86559 1.40198 1.60146 1.48266 1.21425 0.85895 0.75864 0.88774 1.43770 1.08829 1.68914 1.17869 1.90764 1.84468 1.48896 1.21843 0.90525 0.89347 0.85919 0.84689 0.84623 0.75268 0.92694 0.89515 0.75816 0.74897 0.75661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.45 12.57 21.88 0.28 -45.18 16 2 C 0.00 -0.19 5.04 85.37 0.43 0.24 16 3 Si 1.12 46.23 29.98 68.60 2.06 48.29 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.51 -28.79 7.66 23.42 0.18 -28.61 16 8 H 0.08 4.96 5.91 -2.91 -0.02 4.94 16 9 C 0.10 5.14 5.18 -21.11 -0.11 5.03 16 10 C -0.23 -11.27 7.86 22.72 0.18 -11.09 16 11 C -0.07 -2.99 10.01 22.26 0.22 -2.76 16 12 C -0.25 -9.05 10.03 22.41 0.22 -8.82 16 13 C -0.04 -1.52 9.53 22.50 0.21 -1.30 16 14 C -0.28 -13.21 5.92 -19.70 -0.12 -13.33 16 15 C 0.56 24.49 7.73 86.66 0.67 25.16 16 16 O -0.58 -29.86 13.55 -4.09 -0.06 -29.91 16 17 N -0.72 -21.85 5.45 -466.37 -2.54 -24.40 16 18 C 0.10 2.44 5.28 86.38 0.46 2.89 16 19 C 0.09 1.73 3.41 29.85 0.10 1.83 16 20 H 0.16 2.00 8.14 -2.38 -0.02 1.98 16 21 O -0.55 -12.07 12.94 -129.99 -1.68 -13.75 16 22 C 0.50 9.79 7.44 87.66 0.65 10.44 16 23 N -0.83 -9.52 8.77 -173.54 -1.52 -11.04 16 24 O -0.58 -16.67 17.16 15.94 0.27 -16.40 16 25 H 0.28 16.17 6.54 -92.71 -0.61 15.56 16 26 H 0.09 4.63 6.93 -2.91 -0.02 4.61 16 27 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.14 3.88 6.41 -2.91 -0.02 3.86 16 30 H 0.41 10.35 6.51 -92.71 -0.60 9.75 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.92 7.77 -2.39 -0.02 1.90 16 33 H 0.39 7.91 8.79 -74.06 -0.65 7.26 16 34 H 0.42 2.62 8.53 -92.71 -0.79 1.83 16 35 H 0.41 3.92 8.93 -92.70 -0.83 3.10 16 Total: -1.00 -75.89 305.56 -1.61 -77.50 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.52 Total: 35.21 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.10 Total: -20.32 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.79 Total: -80.61 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -1.46 Total: -60.06 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.06 Total: 48.29 kcal Total: -75.89 -1.61 -77.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618758945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.357 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds