Wall clock time and date at job start Mon Mar 30 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 H 1.09009 * 109.46903 * 34.99807 * 18 17 15 20 20 C 1.52999 * 109.47485 * 154.99621 * 18 17 15 21 21 O 1.42898 * 109.46794 * 65.00219 * 20 18 17 22 22 C 1.50696 * 109.47200 * 274.99854 * 18 17 15 23 23 N 1.34784 * 120.00047 * 179.97438 * 22 18 17 24 24 O 1.21283 * 120.00152 * 0.02562 * 22 18 17 25 25 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 26 26 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 27 27 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 28 28 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 30 30 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 31 31 H 1.09003 * 109.47450 * 184.99939 * 20 18 17 32 32 H 1.08997 * 109.47040 * 305.00520 * 20 18 17 33 33 H 0.96708 * 114.00042 * 180.02562 * 21 20 18 34 34 H 0.96992 * 120.00073 * 0.02562 * 23 22 18 35 35 H 0.96997 * 119.99408 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 1 4.8206 -4.1644 -2.6987 20 6 4.7358 -6.3100 -2.8719 21 8 3.7720 -7.3073 -3.2162 22 6 3.4089 -4.6967 -4.2081 23 7 4.1481 -4.7013 -5.3352 24 8 2.2135 -4.5012 -4.2678 25 1 -0.4850 -0.8367 -0.0756 26 1 0.1285 -1.4355 1.8893 27 1 -0.9875 -3.5080 2.5771 28 1 -0.4137 -5.6472 1.5107 29 1 1.2848 -5.7455 -0.2604 30 1 2.6458 -5.6966 -1.4946 31 1 5.5467 -6.3216 -3.6002 32 1 5.1356 -6.5185 -1.8795 33 1 4.1262 -8.2070 -3.2342 34 1 5.1042 -4.8573 -5.2875 35 1 3.7237 -4.5493 -6.1940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627291102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:26 Heat of formation + Delta-G solvation = -106.223692 kcal Electronic energy + Delta-G solvation = -21719.396435 eV Core-core repulsion = 18295.912883 eV Total energy + Delta-G solvation = -3423.483552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91991 -38.46081 -37.08711 -36.66889 -34.12236 -33.60676 -33.38684 -30.43363 -29.43473 -28.55773 -25.18187 -24.03301 -22.43821 -20.96756 -20.13196 -19.57629 -18.10933 -17.85717 -17.40464 -16.49604 -16.33649 -15.36849 -14.80318 -14.57061 -14.30478 -14.09299 -13.96299 -13.79137 -13.55020 -13.19003 -12.53767 -12.46295 -12.06567 -11.71138 -11.64230 -11.09137 -10.86610 -10.68779 -10.47721 -10.33096 -10.10011 -9.80703 -9.56214 -9.50007 -9.01896 -8.55585 -8.37674 -7.72332 -7.53633 -7.08404 -4.39744 2.29997 2.80630 2.93639 3.23042 3.34871 3.43859 3.47406 3.86133 3.97015 4.09072 4.20059 4.71107 4.79914 4.90307 5.04540 5.38819 5.46046 5.57692 5.95889 6.10201 6.24035 6.55069 6.78456 6.88942 6.98904 7.06820 7.32928 7.34377 7.49050 7.56643 7.66830 7.79030 7.94455 8.15075 8.27015 8.40142 8.51397 8.79496 8.91858 9.37953 10.10428 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.006251 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.753586 B = 4478.499129 C = 5604.688290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.030 3.970 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.121 3.879 10 C -0.202 4.202 11 C -0.075 4.075 12 C -0.260 4.260 13 C -0.041 4.041 14 C -0.261 4.261 15 C 0.571 3.429 16 O -0.538 6.538 17 N -0.722 5.722 18 C 0.134 3.866 19 H 0.122 0.878 20 C 0.074 3.926 21 O -0.564 6.564 22 C 0.512 3.488 23 N -0.861 5.861 24 O -0.519 6.519 25 H 0.299 0.701 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.401 0.599 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.381 0.619 34 H 0.395 0.605 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -10.923 -5.128 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.894 3.106 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.122 0.878 9 C 0.116 3.884 10 C -0.221 4.221 11 C -0.094 4.094 12 C -0.279 4.279 13 C -0.059 4.059 14 C -0.266 4.266 15 C 0.366 3.634 16 O -0.416 6.416 17 N -0.376 5.376 18 C 0.023 3.977 19 H 0.139 0.861 20 C -0.005 4.005 21 O -0.370 6.370 22 C 0.295 3.705 23 N -0.426 5.426 24 O -0.392 6.392 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.236 0.764 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.222 0.778 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.766 -7.868 -5.210 13.580 hybrid contribution 0.551 -2.773 -0.357 2.849 sum 10.317 -10.640 -5.567 15.832 Atomic orbital electron populations 1.70374 1.08258 1.34381 1.28652 1.27265 0.95722 1.04663 0.91488 0.83556 0.75536 0.73359 0.78111 1.19942 1.19973 1.19886 1.21150 1.01668 0.91955 1.34545 0.87782 1.17500 0.89742 0.92006 0.89103 1.21233 1.03082 0.97080 1.00687 1.20738 0.97574 0.93203 0.97884 1.20235 1.05862 0.96720 1.05086 1.20740 0.94739 0.95468 0.95003 1.19310 1.07740 0.95364 1.04149 1.18383 0.81749 0.81822 0.81466 1.90658 1.55075 1.32878 1.63019 1.45647 1.43535 1.10453 1.37983 1.20760 0.92858 0.97134 0.86923 0.86067 1.22405 0.90589 0.87155 1.00337 1.86610 1.38439 1.18989 1.92917 1.21106 0.87729 0.75334 0.86378 1.43832 1.12001 1.77431 1.09331 1.90764 1.15057 1.46686 1.86675 0.88737 0.87543 0.88892 0.88885 0.89028 0.76376 0.92083 0.91581 0.77175 0.77783 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.13 12.57 55.56 0.70 -21.43 16 2 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 3 Si 1.07 23.18 29.98 -169.99 -5.10 18.09 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.47 -13.24 7.65 -37.81 -0.29 -13.53 16 8 H 0.10 3.04 5.92 -52.49 -0.31 2.73 16 9 C 0.12 3.35 5.17 -106.54 -0.55 2.80 16 10 C -0.20 -5.20 7.87 -38.88 -0.31 -5.51 16 11 C -0.08 -1.73 10.01 -39.60 -0.40 -2.12 16 12 C -0.26 -5.72 10.03 -39.37 -0.39 -6.11 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 14 C -0.26 -6.70 5.92 -104.36 -0.62 -7.32 16 15 C 0.57 13.98 7.56 -12.52 -0.09 13.88 16 16 O -0.54 -14.66 13.22 5.27 0.07 -14.59 16 17 N -0.72 -13.80 4.54 -56.01 -0.25 -14.05 16 18 C 0.13 2.02 2.78 -69.09 -0.19 1.83 16 19 H 0.12 1.79 7.58 -51.92 -0.39 1.40 16 20 C 0.07 0.70 6.65 37.16 0.25 0.95 16 21 O -0.56 -5.84 12.87 -35.23 -0.45 -6.29 16 22 C 0.51 8.71 6.98 -10.98 -0.08 8.63 16 23 N -0.86 -9.61 8.78 31.22 0.27 -9.34 16 24 O -0.52 -11.92 17.16 5.55 0.10 -11.82 16 25 H 0.30 8.59 6.55 -40.82 -0.27 8.32 16 26 H 0.11 2.78 6.94 -52.49 -0.36 2.42 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.77 6.41 -52.49 -0.34 1.43 16 30 H 0.40 7.08 6.42 -40.82 -0.26 6.82 16 31 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.38 1.90 9.12 45.56 0.42 2.32 16 34 H 0.39 2.79 8.34 -40.82 -0.34 2.45 16 35 H 0.40 4.12 8.93 -40.82 -0.36 3.75 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -37.50 303.82 -5.91 -43.41 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -2.69 Total: 18.52 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.13 Total: -7.06 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.72 Total: -44.82 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.29 Total: -32.71 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.10 Total: 18.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -37.50 -5.91 -43.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627291102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.815 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds