Wall clock time and date at job start Mon Mar 30 2020 23:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 H 1.09009 * 109.46903 * 34.99807 * 18 17 15 20 20 C 1.52999 * 109.47485 * 154.99621 * 18 17 15 21 21 O 1.42898 * 109.46794 * 65.00219 * 20 18 17 22 22 C 1.50696 * 109.47200 * 274.99854 * 18 17 15 23 23 N 1.34784 * 120.00047 * 179.97438 * 22 18 17 24 24 O 1.21283 * 120.00152 * 0.02562 * 22 18 17 25 25 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 26 26 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 27 27 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 28 28 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 30 30 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 31 31 H 1.09003 * 109.47450 * 184.99939 * 20 18 17 32 32 H 1.08997 * 109.47040 * 305.00520 * 20 18 17 33 33 H 0.96708 * 114.00042 * 180.02562 * 21 20 18 34 34 H 0.96992 * 120.00073 * 0.02562 * 23 22 18 35 35 H 0.96997 * 119.99408 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 1 4.8206 -4.1644 -2.6987 20 6 4.7358 -6.3100 -2.8719 21 8 3.7720 -7.3073 -3.2162 22 6 3.4089 -4.6967 -4.2081 23 7 4.1481 -4.7013 -5.3352 24 8 2.2135 -4.5012 -4.2678 25 1 -0.4850 -0.8367 -0.0756 26 1 0.1285 -1.4355 1.8893 27 1 -0.9875 -3.5080 2.5771 28 1 -0.4137 -5.6472 1.5107 29 1 1.2848 -5.7455 -0.2604 30 1 2.6458 -5.6966 -1.4946 31 1 5.5467 -6.3216 -3.6002 32 1 5.1356 -6.5185 -1.8795 33 1 4.1262 -8.2070 -3.2342 34 1 5.1042 -4.8573 -5.2875 35 1 3.7237 -4.5493 -6.1940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627291102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:25 Heat of formation + Delta-G solvation = -140.009908 kcal Electronic energy + Delta-G solvation = -21720.861515 eV Core-core repulsion = 18295.912883 eV Total energy + Delta-G solvation = -3424.948632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38229 -40.16247 -38.68210 -37.82818 -35.96149 -35.13937 -34.69684 -32.15269 -31.32336 -29.98698 -27.11050 -25.12728 -24.21642 -22.84522 -21.58404 -21.18047 -19.95498 -18.90438 -18.54040 -18.11136 -17.57465 -16.75767 -16.53567 -16.01512 -15.93196 -15.62266 -15.57391 -15.40076 -14.95678 -14.71907 -14.36798 -14.03339 -13.79398 -13.39071 -12.93316 -12.72072 -12.61647 -12.50169 -12.02525 -11.95478 -11.51450 -11.43488 -10.96998 -10.96653 -10.66413 -10.40833 -10.03039 -9.62803 -9.50406 -9.11089 -6.46889 0.38680 0.89783 1.44979 1.61587 1.65259 1.76024 2.06615 2.31113 2.34537 2.64461 2.78957 3.21380 3.56092 3.83250 4.00057 4.20138 4.23267 4.34878 4.41587 4.54457 4.64869 4.79431 4.87121 5.13088 5.41557 5.45309 5.63644 5.69876 5.86456 5.89492 5.94795 6.19004 6.32302 6.45460 6.64733 6.83596 6.90202 6.91893 7.36059 7.56405 8.02658 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.006251 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.753586 B = 4478.499129 C = 5604.688290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.006 4.006 3 Si 1.118 2.882 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.095 3.905 10 C -0.225 4.225 11 C -0.071 4.071 12 C -0.244 4.244 13 C -0.043 4.043 14 C -0.283 4.283 15 C 0.564 3.436 16 O -0.576 6.576 17 N -0.706 5.706 18 C 0.121 3.879 19 H 0.123 0.877 20 C 0.084 3.916 21 O -0.589 6.589 22 C 0.505 3.495 23 N -0.831 5.831 24 O -0.591 6.591 25 H 0.281 0.719 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.408 0.592 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.405 0.595 34 H 0.418 0.582 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.187 -13.569 -5.226 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.221 4.221 3 Si 0.935 3.065 4 H -0.189 1.189 5 H -0.178 1.178 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.244 4.244 11 C -0.090 4.090 12 C -0.263 4.263 13 C -0.062 4.062 14 C -0.288 4.288 15 C 0.358 3.642 16 O -0.458 6.458 17 N -0.359 5.359 18 C 0.012 3.988 19 H 0.141 0.859 20 C 0.006 3.994 21 O -0.399 6.399 22 C 0.289 3.711 23 N -0.396 5.396 24 O -0.470 6.470 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.245 0.755 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.257 0.743 34 H 0.250 0.750 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.174 -10.612 -5.339 16.309 hybrid contribution 0.168 -2.295 -0.383 2.333 sum 11.343 -12.906 -5.722 18.110 Atomic orbital electron populations 1.70498 1.08736 1.32966 1.32075 1.28593 0.95843 1.07623 0.90041 0.83016 0.74787 0.69815 0.78902 1.18910 1.17800 1.19721 1.21117 1.01259 0.93525 1.37856 0.89830 1.17922 0.90491 0.92899 0.89627 1.21211 1.04167 0.97839 1.01177 1.21161 0.97226 0.92524 0.98065 1.20799 1.04415 0.97808 1.03303 1.21136 0.94145 0.95880 0.95006 1.19795 1.08466 0.95962 1.04600 1.18406 0.81471 0.82861 0.81506 1.90625 1.56415 1.34611 1.64142 1.45402 1.43573 1.08812 1.38107 1.21236 0.91658 1.01247 0.84692 0.85907 1.22412 0.90320 0.83683 1.02961 1.86546 1.39591 1.20738 1.93055 1.21474 0.87087 0.74424 0.88124 1.43540 1.13015 1.74872 1.08198 1.90736 1.18061 1.50429 1.87792 0.90726 0.89068 0.85518 0.84539 0.85388 0.75475 0.87508 0.89791 0.74331 0.74991 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.09 12.57 21.88 0.28 -47.82 16 2 C -0.01 -0.35 5.04 85.37 0.43 0.08 16 3 Si 1.12 48.59 29.98 68.60 2.06 50.65 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.51 -30.67 7.65 23.41 0.18 -30.49 16 8 H 0.08 5.23 5.92 -2.91 -0.02 5.22 16 9 C 0.09 5.45 5.17 -21.11 -0.11 5.34 16 10 C -0.22 -11.90 7.87 22.72 0.18 -11.72 16 11 C -0.07 -3.16 10.01 22.26 0.22 -2.94 16 12 C -0.24 -9.97 10.03 22.41 0.22 -9.75 16 13 C -0.04 -1.86 9.53 22.51 0.21 -1.65 16 14 C -0.28 -14.79 5.92 -19.70 -0.12 -14.91 16 15 C 0.56 28.22 7.56 86.67 0.66 28.87 16 16 O -0.58 -32.84 13.22 -4.06 -0.05 -32.90 16 17 N -0.71 -26.47 4.54 -449.37 -2.04 -28.51 16 18 C 0.12 3.47 2.78 44.24 0.12 3.59 16 19 H 0.12 3.50 7.58 -2.38 -0.02 3.48 16 20 C 0.08 1.27 6.65 71.98 0.48 1.75 16 21 O -0.59 -10.08 12.87 -148.98 -1.92 -12.00 16 22 C 0.51 16.72 6.98 87.65 0.61 17.33 16 23 N -0.83 -16.75 8.78 -173.53 -1.52 -18.27 16 24 O -0.59 -27.59 17.16 -3.04 -0.05 -27.64 16 25 H 0.28 17.14 6.55 -92.71 -0.61 16.53 16 26 H 0.09 5.01 6.94 -2.91 -0.02 4.99 16 27 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 28 H 0.14 4.45 8.06 -2.92 -0.02 4.42 16 29 H 0.13 4.51 6.41 -2.91 -0.02 4.49 16 30 H 0.41 13.69 6.42 -92.71 -0.60 13.09 16 31 H 0.11 0.68 7.71 -2.39 -0.02 0.66 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.41 2.38 9.12 -74.05 -0.68 1.70 16 34 H 0.42 4.45 8.34 -92.71 -0.77 3.68 16 35 H 0.40 7.64 8.93 -92.71 -0.83 6.81 16 Total: -1.00 -88.98 303.82 -1.68 -90.66 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -1.52 Total: 40.32 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 3.09 Total: -14.49 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.29 Total: -94.60 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -2.02 Total: -72.54 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.06 Total: 50.65 kcal Total: -88.98 -1.68 -90.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627291102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.348 kcal (2) G-P(sol) polarization free energy of solvation -88.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds