Wall clock time and date at job start Tue Mar 31 2020 00:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48500 * 109.46915 * 268.88188 * 3 2 1 5 5 H 1.48499 * 109.47069 * 28.88213 * 3 2 1 6 6 H 1.48499 * 109.46969 * 148.88539 * 3 2 1 7 7 C 1.37879 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99634 * 5.07310 * 7 2 1 9 9 C 1.50699 * 120.00167 * 185.07623 * 7 2 1 10 10 O 1.42896 * 110.77865 * 62.07480 * 9 7 2 11 11 C 1.55155 * 110.71947 * 298.83535 * 9 7 2 12 12 C 1.55128 * 101.48572 * 205.96773 * 11 9 7 13 13 N 1.47419 * 104.72308 * 37.29746 * 12 11 9 14 14 C 1.34779 * 125.65089 * 155.81439 * 13 12 11 15 15 O 1.21533 * 119.99917 * 185.41086 * 14 13 12 16 16 C 1.47981 * 119.99574 * 5.40913 * 14 13 12 17 17 C 1.39919 * 120.90837 * 196.84732 * 16 14 13 18 18 C 1.38010 * 119.00408 * 179.97438 * 17 16 14 19 19 N 1.31991 * 120.89491 * 359.97438 * 18 17 16 20 20 O 1.41602 * 118.98559 * 180.02562 * 19 18 17 21 21 C 1.31987 * 122.02485 * 0.27359 * 19 18 17 22 22 C 1.38012 * 120.88993 * 359.49922 * 21 19 18 23 23 C 1.47030 * 108.70142 * 335.55353 * 13 12 11 24 24 H 0.96998 * 120.00011 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00073 * 61.78425 * 10 9 7 26 26 H 1.09000 * 111.00382 * 324.21290 * 11 9 7 27 27 H 1.09005 * 111.00155 * 88.01984 * 11 9 7 28 28 H 1.08994 * 110.49830 * 278.45219 * 12 11 9 29 29 H 1.09003 * 110.34165 * 156.06348 * 12 11 9 30 30 H 1.07994 * 120.49459 * 359.95881 * 17 16 14 31 31 H 1.08005 * 119.55325 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.55593 * 179.71787 * 21 19 18 33 33 H 1.07997 * 120.50332 * 180.25261 * 22 21 19 34 34 H 1.09006 * 109.88346 * 120.70602 * 23 13 12 35 35 H 1.09005 * 109.88045 * 241.71249 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5203 2.0328 -1.3998 5 1 1.4349 2.6594 0.6762 6 1 3.5347 1.4472 0.7235 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1275 -0.0837 9 6 3.5072 -1.1966 0.1149 10 8 3.9211 -0.6252 1.3575 11 6 4.1507 -0.4416 -1.0780 12 6 5.5469 -1.1135 -1.1519 13 7 5.2975 -2.5316 -0.8354 14 6 6.0743 -3.5680 -1.2079 15 8 5.7205 -4.7071 -0.9749 16 6 7.3580 -3.3189 -1.9007 17 6 8.0074 -4.3419 -2.6004 18 6 9.2027 -4.0658 -3.2328 19 7 9.7321 -2.8577 -3.1838 20 8 10.9599 -2.6192 -3.8477 21 6 9.1547 -1.8664 -2.5311 22 6 7.9552 -2.0539 -1.8748 23 6 4.0642 -2.6273 -0.0406 24 1 -0.4850 0.8400 0.0004 25 1 3.6088 -1.1072 2.1355 26 1 3.5852 -0.6059 -1.9952 27 1 4.2417 0.6232 -0.8631 28 1 6.2215 -0.6739 -0.4173 29 1 5.9618 -1.0160 -2.1551 30 1 7.5799 -5.3326 -2.6447 31 1 9.7118 -4.8490 -3.7750 32 1 9.6255 -0.8946 -2.5133 33 1 7.4862 -1.2373 -1.3460 34 1 3.3376 -3.2540 -0.5578 35 1 4.2866 -3.0497 0.9394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627463823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:49 Heat of formation + Delta-G solvation = 8.526338 kcal Electronic energy + Delta-G solvation = -21600.198008 eV Core-core repulsion = 18181.690391 eV Total energy + Delta-G solvation = -3418.507617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71997 -39.90173 -37.87869 -35.19469 -34.54439 -32.59242 -32.27809 -30.78671 -30.11108 -28.66791 -26.22594 -24.90471 -24.27736 -22.79386 -20.59513 -19.86956 -18.18860 -17.76457 -17.67741 -17.18862 -15.97199 -15.79487 -15.61819 -15.34496 -14.96934 -14.85081 -14.46747 -13.75781 -13.48405 -13.40049 -12.91857 -12.79436 -12.50878 -12.35428 -11.74142 -11.51285 -11.44057 -11.23407 -10.79096 -10.48457 -10.32914 -10.09697 -9.95566 -9.59622 -9.19789 -8.92424 -8.87820 -8.71003 -8.53217 -6.35822 -4.49296 -0.09441 0.25185 2.26253 2.35215 2.79623 3.12920 3.15736 3.30070 3.42944 3.94697 4.12688 4.14104 4.18674 4.26373 4.46977 4.81964 4.90429 4.93269 5.05444 5.17416 5.25430 5.33052 5.38554 5.42219 5.57261 5.80764 6.18659 6.24591 6.35522 6.41593 6.41893 6.77766 6.89136 7.28130 7.46584 7.96236 8.03637 8.57091 8.71727 9.25806 10.74478 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.004631 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.619600 B = 6044.709311 C = 6614.455681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.874 3.126 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.228 1.228 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.218 3.782 10 O -0.573 6.573 11 C -0.130 4.130 12 C 0.084 3.916 13 N -0.596 5.596 14 C 0.565 3.435 15 O -0.531 6.531 16 C -0.081 4.081 17 C -0.067 4.067 18 C 0.067 3.933 19 N -0.109 5.109 20 O -0.546 6.546 21 C 0.070 3.930 22 C -0.110 4.110 23 C 0.094 3.906 24 H 0.269 0.731 25 H 0.367 0.633 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.184 0.816 34 H 0.081 0.919 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -2.958 -2.081 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.115 4.115 3 Si 0.701 3.299 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.151 1.151 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.178 3.822 10 O -0.380 6.380 11 C -0.168 4.168 12 C -0.038 4.038 13 N -0.328 5.328 14 C 0.352 3.648 15 O -0.409 6.409 16 C -0.092 4.092 17 C -0.087 4.087 18 C -0.078 4.078 19 N 0.213 4.787 20 O -0.602 6.602 21 C -0.076 4.076 22 C -0.129 4.129 23 C -0.027 4.027 24 H 0.078 0.922 25 H 0.215 0.785 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.205 0.795 32 H 0.205 0.795 33 H 0.201 0.799 34 H 0.099 0.901 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.376 -3.030 -2.566 12.998 hybrid contribution 0.115 0.559 0.187 0.600 sum 12.491 -2.471 -2.379 12.954 Atomic orbital electron populations 1.69921 1.06703 1.27807 1.47382 1.24952 0.94579 0.99656 0.92334 0.87089 0.82070 0.82319 0.78385 1.20970 1.22428 1.15099 1.21158 0.88225 0.95375 1.54548 0.90227 1.19952 0.93905 0.85965 0.82394 1.86485 1.78623 1.56987 1.15893 1.23269 0.93046 1.00022 1.00423 1.22918 0.99990 0.81016 0.99838 1.48487 1.25600 1.06489 1.52197 1.17509 0.82937 0.84453 0.79880 1.90811 1.72876 1.20961 1.56216 1.20680 0.96405 0.94028 0.98129 1.21963 0.92339 1.01360 0.92999 1.22650 0.95014 0.89453 1.00688 1.43350 1.14200 1.04394 1.16713 1.97667 1.03820 1.93859 1.64860 1.22676 0.94127 0.96102 0.94670 1.22943 0.93647 0.98790 0.97478 1.22978 0.83920 1.01248 0.94558 0.92159 0.78531 0.88905 0.90018 0.90329 0.90554 0.80767 0.79478 0.79499 0.79890 0.90078 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 13.96 55.43 0.77 -23.93 16 2 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.87 19.29 24.08 -169.99 -4.09 15.20 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.23 -4.78 5.20 56.52 0.29 -4.48 16 7 C -0.56 -13.56 8.81 -34.44 -0.30 -13.86 16 8 H 0.08 2.15 7.82 -52.49 -0.41 1.73 16 9 C 0.22 4.23 0.67 -89.94 -0.06 4.17 16 10 O -0.57 -10.78 10.58 -35.23 -0.37 -11.15 16 11 C -0.13 -2.22 4.75 -24.46 -0.12 -2.33 16 12 C 0.08 1.08 4.94 -2.41 -0.01 1.07 16 13 N -0.60 -8.86 3.32 -171.44 -0.57 -9.43 16 14 C 0.56 8.09 7.75 -12.27 -0.10 7.99 16 15 O -0.53 -9.20 16.90 5.34 0.09 -9.11 16 16 C -0.08 -0.87 5.81 -104.65 -0.61 -1.48 16 17 C -0.07 -0.61 9.68 -39.04 -0.38 -0.98 16 18 C 0.07 0.65 10.67 -17.57 -0.19 0.46 16 19 N -0.11 -1.38 3.58 -13.30 -0.05 -1.43 16 20 O -0.55 -10.30 20.04 -11.47 -0.23 -10.53 16 21 C 0.07 0.67 10.67 -17.57 -0.19 0.48 16 22 C -0.11 -0.97 8.23 -39.04 -0.32 -1.29 16 23 C 0.09 1.66 6.21 -3.06 -0.02 1.64 16 24 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 25 H 0.37 5.99 9.08 45.56 0.41 6.41 16 26 H 0.09 1.63 8.04 -51.93 -0.42 1.22 16 27 H 0.08 1.42 4.75 -51.93 -0.25 1.17 16 28 H 0.08 0.87 7.08 -51.93 -0.37 0.50 16 29 H 0.08 0.76 6.41 -51.93 -0.33 0.43 16 30 H 0.17 1.30 7.83 -52.49 -0.41 0.88 16 31 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.18 1.34 4.05 -52.49 -0.21 1.12 16 34 H 0.08 1.55 7.66 -51.93 -0.40 1.16 16 35 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -35.19 290.75 -5.34 -40.53 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -2.89 Total: 7.37 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.39 Total: -1.89 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.16 Total: -34.80 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.51 Total: -30.80 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.09 Total: 15.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.19 -5.34 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627463823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.056 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds