Wall clock time and date at job start Tue Mar 31 2020 00:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48500 * 109.46915 * 268.88188 * 3 2 1 5 5 H 1.48499 * 109.47069 * 28.88213 * 3 2 1 6 6 H 1.48499 * 109.46969 * 148.88539 * 3 2 1 7 7 C 1.37879 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99634 * 5.07310 * 7 2 1 9 9 C 1.50699 * 120.00167 * 185.07623 * 7 2 1 10 10 O 1.42896 * 110.77865 * 62.07480 * 9 7 2 11 11 C 1.55155 * 110.71947 * 298.83535 * 9 7 2 12 12 C 1.55128 * 101.48572 * 205.96773 * 11 9 7 13 13 N 1.47419 * 104.72308 * 37.29746 * 12 11 9 14 14 C 1.34779 * 125.65089 * 155.81439 * 13 12 11 15 15 O 1.21533 * 119.99917 * 185.41086 * 14 13 12 16 16 C 1.47981 * 119.99574 * 5.40913 * 14 13 12 17 17 C 1.39919 * 120.90837 * 196.84732 * 16 14 13 18 18 C 1.38010 * 119.00408 * 179.97438 * 17 16 14 19 19 N 1.31991 * 120.89491 * 359.97438 * 18 17 16 20 20 O 1.41602 * 118.98559 * 180.02562 * 19 18 17 21 21 C 1.31987 * 122.02485 * 0.27359 * 19 18 17 22 22 C 1.38012 * 120.88993 * 359.49922 * 21 19 18 23 23 C 1.47030 * 108.70142 * 335.55353 * 13 12 11 24 24 H 0.96998 * 120.00011 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00073 * 61.78425 * 10 9 7 26 26 H 1.09000 * 111.00382 * 324.21290 * 11 9 7 27 27 H 1.09005 * 111.00155 * 88.01984 * 11 9 7 28 28 H 1.08994 * 110.49830 * 278.45219 * 12 11 9 29 29 H 1.09003 * 110.34165 * 156.06348 * 12 11 9 30 30 H 1.07994 * 120.49459 * 359.95881 * 17 16 14 31 31 H 1.08005 * 119.55325 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.55593 * 179.71787 * 21 19 18 33 33 H 1.07997 * 120.50332 * 180.25261 * 22 21 19 34 34 H 1.09006 * 109.88346 * 120.70602 * 23 13 12 35 35 H 1.09005 * 109.88045 * 241.71249 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5203 2.0328 -1.3998 5 1 1.4349 2.6594 0.6762 6 1 3.5347 1.4472 0.7235 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1275 -0.0837 9 6 3.5072 -1.1966 0.1149 10 8 3.9211 -0.6252 1.3575 11 6 4.1507 -0.4416 -1.0780 12 6 5.5469 -1.1135 -1.1519 13 7 5.2975 -2.5316 -0.8354 14 6 6.0743 -3.5680 -1.2079 15 8 5.7205 -4.7071 -0.9749 16 6 7.3580 -3.3189 -1.9007 17 6 8.0074 -4.3419 -2.6004 18 6 9.2027 -4.0658 -3.2328 19 7 9.7321 -2.8577 -3.1838 20 8 10.9599 -2.6192 -3.8477 21 6 9.1547 -1.8664 -2.5311 22 6 7.9552 -2.0539 -1.8748 23 6 4.0642 -2.6273 -0.0406 24 1 -0.4850 0.8400 0.0004 25 1 3.6088 -1.1072 2.1355 26 1 3.5852 -0.6059 -1.9952 27 1 4.2417 0.6232 -0.8631 28 1 6.2215 -0.6739 -0.4173 29 1 5.9618 -1.0160 -2.1551 30 1 7.5799 -5.3326 -2.6447 31 1 9.7118 -4.8490 -3.7750 32 1 9.6255 -0.8946 -2.5133 33 1 7.4862 -1.2373 -1.3460 34 1 3.3376 -3.2540 -0.5578 35 1 4.2866 -3.0497 0.9394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627463823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:49 Heat of formation + Delta-G solvation = -20.234017 kcal Electronic energy + Delta-G solvation = -21601.445151 eV Core-core repulsion = 18181.690391 eV Total energy + Delta-G solvation = -3419.754760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.59641 -41.07827 -39.22137 -36.46121 -35.58284 -34.49403 -33.08509 -32.10444 -31.25962 -30.02318 -27.66717 -25.98427 -25.26813 -23.98712 -21.84359 -21.20065 -19.56352 -18.99893 -18.62368 -18.09352 -17.19214 -16.87564 -16.80207 -16.49008 -16.33869 -16.25640 -15.25855 -15.02437 -14.88153 -14.79694 -14.23698 -14.09727 -13.78930 -13.35821 -13.11083 -12.91325 -12.81630 -12.42626 -12.22084 -12.11341 -11.78230 -11.25564 -10.93718 -10.80336 -10.79062 -10.75596 -10.34308 -10.07252 -9.77195 -8.34562 -6.51163 -0.95716 -0.45428 1.38685 1.41061 1.43182 1.51029 1.66308 1.69465 2.22333 2.41431 2.96461 3.01904 3.34159 3.40023 3.45293 3.54050 3.75398 3.78187 3.98713 4.19140 4.27283 4.35342 4.43799 4.46477 4.61836 4.67381 4.77719 4.94965 5.01456 5.04888 5.43292 5.52806 5.67771 5.77154 6.07376 6.32695 6.60886 6.81520 7.14045 7.31077 8.79760 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.004631 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.619600 B = 6044.709311 C = 6614.455681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.035 3.965 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.313 1.313 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.034 0.966 9 C 0.218 3.782 10 O -0.570 6.570 11 C -0.136 4.136 12 C 0.088 3.912 13 N -0.598 5.598 14 C 0.568 3.432 15 O -0.566 6.566 16 C -0.083 4.083 17 C -0.055 4.055 18 C 0.079 3.921 19 N -0.131 5.131 20 O -0.612 6.612 21 C 0.082 3.918 22 C -0.090 4.090 23 C 0.103 3.897 24 H 0.267 0.733 25 H 0.378 0.622 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.191 0.809 31 H 0.207 0.793 32 H 0.210 0.790 33 H 0.208 0.792 34 H 0.052 0.948 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.631 -1.841 -2.151 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.242 1.242 6 H -0.124 1.124 7 C -0.593 4.593 8 H 0.052 0.948 9 C 0.177 3.823 10 O -0.378 6.378 11 C -0.174 4.174 12 C -0.032 4.032 13 N -0.329 5.329 14 C 0.357 3.643 15 O -0.446 6.446 16 C -0.094 4.094 17 C -0.074 4.074 18 C -0.066 4.066 19 N 0.188 4.812 20 O -0.666 6.666 21 C -0.063 4.063 22 C -0.108 4.108 23 C -0.020 4.020 24 H 0.076 0.924 25 H 0.226 0.774 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.208 0.792 31 H 0.224 0.776 32 H 0.227 0.773 33 H 0.224 0.776 34 H 0.071 0.929 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.016 -1.918 -2.654 15.369 hybrid contribution -0.874 0.056 0.301 0.926 sum 14.142 -1.862 -2.353 14.457 Atomic orbital electron populations 1.70081 1.08832 1.28559 1.50289 1.25841 0.95103 1.03539 0.92076 0.86128 0.81313 0.77138 0.79201 1.19395 1.24152 1.12393 1.21467 0.91387 0.93417 1.53012 0.94793 1.19765 0.90904 0.87924 0.83668 1.86423 1.78178 1.57219 1.15962 1.23208 0.95430 1.00369 0.98379 1.23150 0.97900 0.78995 1.03183 1.48457 1.24687 1.07828 1.51962 1.17916 0.83593 0.83621 0.79201 1.90803 1.73901 1.22408 1.57529 1.20485 0.94921 0.95528 0.98440 1.22084 0.91601 1.01748 0.91970 1.22994 0.94684 0.89191 0.99763 1.43461 1.13707 1.05943 1.18061 1.97644 1.06935 1.94399 1.67580 1.23113 0.93775 0.96534 0.92923 1.23044 0.92795 0.98371 0.96619 1.22590 0.84843 0.99572 0.95014 0.92382 0.77368 0.90039 0.89481 0.87126 0.86730 0.79201 0.77617 0.77282 0.77593 0.92919 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.55 13.96 21.45 0.30 -54.25 16 2 C 0.03 1.81 5.47 84.65 0.46 2.27 16 3 Si 0.94 39.05 24.08 68.60 1.65 40.70 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.31 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.20 -7.51 5.20 99.48 0.52 -6.99 16 7 C -0.56 -27.71 8.81 25.60 0.23 -27.48 16 8 H 0.03 1.94 7.82 -2.91 -0.02 1.92 16 9 C 0.22 8.15 0.67 -10.35 -0.01 8.14 16 10 O -0.57 -19.82 10.58 -148.98 -1.58 -21.39 16 11 C -0.14 -4.20 4.75 32.06 0.15 -4.05 16 12 C 0.09 1.82 4.94 86.93 0.43 2.25 16 13 N -0.60 -15.96 3.32 -814.60 -2.71 -18.67 16 14 C 0.57 14.60 7.75 86.83 0.67 15.27 16 15 O -0.57 -18.75 16.90 -3.82 -0.06 -18.81 16 16 C -0.08 -1.44 5.81 -19.88 -0.12 -1.56 16 17 C -0.05 -0.80 9.68 22.62 0.22 -0.58 16 18 C 0.08 1.29 10.67 84.61 0.90 2.19 16 19 N -0.13 -3.02 3.58 -195.98 -0.70 -3.72 16 20 O -0.61 -22.64 20.04 -38.79 -0.78 -23.42 16 21 C 0.08 1.25 10.67 84.62 0.90 2.15 16 22 C -0.09 -1.13 8.23 22.62 0.19 -0.94 16 23 C 0.10 3.51 6.21 86.73 0.54 4.04 16 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.38 11.55 9.08 -74.06 -0.67 10.88 16 26 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 27 H 0.09 2.62 4.75 -2.38 -0.01 2.61 16 28 H 0.11 1.68 7.08 -2.39 -0.02 1.67 16 29 H 0.11 1.55 6.41 -2.39 -0.02 1.54 16 30 H 0.19 2.22 7.83 -2.91 -0.02 2.20 16 31 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.21 1.63 4.05 -2.91 -0.01 1.61 16 34 H 0.05 2.08 7.66 -2.38 -0.02 2.06 16 35 H 0.07 2.28 8.06 -2.38 -0.02 2.26 16 Total: -1.00 -80.78 290.75 0.98 -79.80 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.28 Total: 18.04 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.57 Total: 1.71 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.11 Total: -76.64 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -2.42 Total: -63.62 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.65 Total: 40.70 kcal Total: -80.78 0.98 -79.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627463823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.568 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds