Wall clock time and date at job start Tue Mar 31 2020 00:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48499 * 109.46989 * 264.84951 * 3 2 1 5 5 H 1.48497 * 109.47134 * 24.84864 * 3 2 1 6 6 H 1.48498 * 109.46822 * 144.85244 * 3 2 1 7 7 C 1.37879 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00607 * 5.06809 * 7 2 1 9 9 C 1.50702 * 119.99816 * 185.06664 * 7 2 1 10 10 O 1.42901 * 110.91753 * 61.12915 * 9 7 2 11 11 C 1.55439 * 111.12020 * 297.13185 * 9 7 2 12 12 C 1.54326 * 102.97282 * 206.46594 * 11 9 7 13 13 N 1.47027 * 107.27003 * 22.18908 * 12 11 9 14 14 C 1.34771 * 125.64711 * 181.08263 * 13 12 11 15 15 O 1.21553 * 119.99750 * 174.39629 * 14 13 12 16 16 C 1.47842 * 120.00306 * 354.39465 * 14 13 12 17 17 C 1.40018 * 120.55146 * 6.96357 * 16 14 13 18 18 C 1.38356 * 118.31636 * 180.02562 * 17 16 14 19 19 C 1.38336 * 119.31903 * 0.02562 * 18 17 16 20 20 N 1.32037 * 121.06526 * 359.97438 * 19 18 17 21 21 O 1.41605 * 119.07135 * 180.02562 * 20 19 18 22 22 C 1.31811 * 121.84936 * 359.74359 * 20 19 18 23 23 C 1.47424 * 108.69983 * 1.06266 * 13 12 11 24 24 H 0.96997 * 119.99412 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99906 * 62.44134 * 10 9 7 26 26 H 1.08996 * 110.71440 * 88.09012 * 11 9 7 27 27 H 1.09001 * 110.70765 * 324.83452 * 11 9 7 28 28 H 1.09000 * 109.88162 * 262.77460 * 12 11 9 29 29 H 1.08993 * 110.01571 * 141.68026 * 12 11 9 30 30 H 1.07999 * 120.83979 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.34220 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.46475 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.72672 * 180.26739 * 22 20 19 34 34 H 1.09006 * 110.36819 * 94.70805 * 23 13 12 35 35 H 1.08997 * 110.36509 * 216.92008 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6056 1.9835 -1.3944 5 1 1.3966 2.6816 0.5883 6 1 3.4882 1.4738 0.8060 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0836 9 6 3.5071 -1.1968 0.1147 10 8 3.9253 -0.6059 1.3468 11 6 4.1632 -0.4796 -1.0983 12 6 5.5532 -1.1445 -1.1835 13 7 5.4563 -2.4469 -0.5081 14 6 6.4652 -3.3262 -0.3491 15 8 6.2973 -4.3300 0.3155 16 6 7.7760 -3.0700 -0.9830 17 6 8.0289 -1.8532 -1.6280 18 6 9.2715 -1.6627 -2.2060 19 6 10.2157 -2.6708 -2.1299 20 7 9.9496 -3.8086 -1.5150 21 8 10.9476 -4.8117 -1.4618 22 6 8.7830 -4.0347 -0.9447 23 6 4.0728 -2.6313 -0.0333 24 1 -0.4849 0.8401 0.0004 25 1 3.6221 -1.0800 2.1332 26 1 4.2581 0.5895 -0.9089 27 1 3.5922 -0.6618 -2.0087 28 1 6.2936 -0.5212 -0.6822 29 1 5.8349 -1.2879 -2.2266 30 1 7.2730 -1.0832 -1.6739 31 1 9.5018 -0.7365 -2.7115 32 1 11.1862 -2.5248 -2.5806 33 1 8.6036 -4.9764 -0.4472 34 1 3.4926 -3.1943 -0.7645 35 1 4.0672 -3.1425 0.9293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627464368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:08 Heat of formation + Delta-G solvation = 17.280389 kcal Electronic energy + Delta-G solvation = -21662.584924 eV Core-core repulsion = 18244.456911 eV Total energy + Delta-G solvation = -3418.128013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73384 -39.87663 -37.80518 -35.42236 -34.42694 -32.58812 -32.27887 -30.68501 -30.17911 -28.68294 -26.30161 -24.86546 -24.23705 -22.76295 -20.61032 -19.98550 -18.10897 -17.69256 -17.56203 -17.28791 -16.02992 -15.70659 -15.54979 -15.29268 -14.94964 -14.83798 -14.70956 -13.76291 -13.67927 -13.27562 -12.96329 -12.76198 -12.48106 -12.25142 -11.58854 -11.51186 -11.33765 -11.29035 -10.75470 -10.51320 -10.33859 -10.06179 -10.01061 -9.50862 -9.21919 -8.97098 -8.81674 -8.74393 -8.42151 -6.36252 -4.49781 -0.08639 0.28220 2.17030 2.36248 2.93256 3.14056 3.16601 3.29434 3.44394 3.96954 4.10848 4.15427 4.21464 4.26640 4.38340 4.77332 4.90272 4.95009 5.10390 5.12800 5.19630 5.34790 5.36358 5.41646 5.56416 5.82305 6.14683 6.25786 6.32164 6.38657 6.44464 6.83760 6.87910 7.28651 7.46535 7.98194 8.03559 8.57228 8.73007 9.25670 10.74048 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.004570 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.371244 B = 6125.120445 C = 6626.609733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.874 3.126 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.229 1.229 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.218 3.782 10 O -0.571 6.571 11 C -0.130 4.130 12 C 0.086 3.914 13 N -0.595 5.595 14 C 0.573 3.427 15 O -0.531 6.531 16 C -0.124 4.124 17 C -0.086 4.086 18 C -0.126 4.126 19 C 0.086 3.914 20 N -0.122 5.122 21 O -0.552 6.552 22 C 0.129 3.871 23 C 0.091 3.909 24 H 0.269 0.731 25 H 0.368 0.632 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.190 0.810 31 H 0.170 0.830 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.080 0.920 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.928 3.080 -5.400 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.115 4.115 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.152 1.152 7 C -0.593 4.593 8 H 0.099 0.901 9 C 0.178 3.822 10 O -0.378 6.378 11 C -0.167 4.167 12 C -0.037 4.037 13 N -0.326 5.326 14 C 0.360 3.640 15 O -0.409 6.409 16 C -0.128 4.128 17 C -0.110 4.110 18 C -0.145 4.145 19 C -0.059 4.059 20 N 0.199 4.801 21 O -0.605 6.605 22 C -0.019 4.019 23 C -0.030 4.030 24 H 0.078 0.922 25 H 0.215 0.785 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.206 0.794 31 H 0.188 0.812 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.099 0.901 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.323 2.686 -5.426 14.634 hybrid contribution 0.193 0.421 0.197 0.503 sum 13.516 3.107 -5.229 14.822 Atomic orbital electron populations 1.69922 1.06704 1.27827 1.47353 1.24938 0.94561 0.99649 0.92335 0.87076 0.81886 0.82238 0.78656 1.20845 1.22517 1.15186 1.21082 0.88152 0.95404 1.54626 0.90146 1.20152 0.93624 0.86000 0.82437 1.86474 1.79117 1.56332 1.15889 1.23125 0.92836 1.00123 1.00652 1.22634 1.00451 0.84456 0.96115 1.48405 1.10906 1.17850 1.55453 1.17233 0.82254 0.83273 0.81262 1.90827 1.82245 1.27652 1.40152 1.20520 0.95820 0.94915 1.01563 1.23605 0.98561 0.97501 0.91375 1.21885 0.92468 0.99941 1.00199 1.22919 1.02392 0.85120 0.95513 1.43240 1.09484 1.10555 1.16843 1.97672 1.35605 1.35456 1.91780 1.22715 0.83318 1.01548 0.94289 1.23209 0.78541 1.00974 1.00299 0.92153 0.78499 0.90318 0.88737 0.90581 0.90820 0.79413 0.81217 0.79806 0.78963 0.90135 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 13.96 55.43 0.77 -23.73 16 2 C 0.09 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.87 19.12 23.98 -169.99 -4.08 15.04 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.23 -4.85 5.48 56.52 0.31 -4.54 16 7 C -0.56 -13.40 8.87 -34.44 -0.31 -13.70 16 8 H 0.08 2.13 8.03 -52.49 -0.42 1.71 16 9 C 0.22 4.23 0.69 -89.47 -0.06 4.17 16 10 O -0.57 -11.09 10.58 -35.23 -0.37 -11.46 16 11 C -0.13 -2.13 4.77 -24.74 -0.12 -2.25 16 12 C 0.09 1.06 4.88 -3.06 -0.01 1.04 16 13 N -0.59 -8.90 3.33 -172.50 -0.57 -9.48 16 14 C 0.57 8.64 7.81 -12.33 -0.10 8.54 16 15 O -0.53 -9.73 16.62 5.32 0.09 -9.64 16 16 C -0.12 -1.46 5.89 -104.83 -0.62 -2.08 16 17 C -0.09 -0.70 8.70 -38.87 -0.34 -1.04 16 18 C -0.13 -0.76 10.10 -39.50 -0.40 -1.16 16 19 C 0.09 0.77 10.68 -17.43 -0.19 0.59 16 20 N -0.12 -1.71 3.57 -12.87 -0.05 -1.76 16 21 O -0.55 -11.16 20.05 -11.47 -0.23 -11.39 16 22 C 0.13 1.69 10.27 -17.09 -0.18 1.51 16 23 C 0.09 1.59 6.10 -2.53 -0.02 1.58 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.37 6.33 9.11 45.56 0.41 6.75 16 26 H 0.08 1.33 5.05 -51.93 -0.26 1.06 16 27 H 0.09 1.54 8.04 -51.93 -0.42 1.12 16 28 H 0.08 0.80 6.74 -51.93 -0.35 0.45 16 29 H 0.07 0.67 6.73 -51.93 -0.35 0.32 16 30 H 0.19 1.29 2.91 -53.63 -0.16 1.13 16 31 H 0.17 0.31 8.06 -52.49 -0.42 -0.11 16 32 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.19 2.60 7.68 -52.48 -0.40 2.20 16 34 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 35 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -35.58 290.72 -5.33 -40.91 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.85 Total: 7.69 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.43 Total: -0.57 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.15 Total: -34.96 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.51 Total: -32.49 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.08 Total: 15.04 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.58 -5.33 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627464368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.193 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds