Wall clock time and date at job start Tue Mar 31 2020 00:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48499 * 109.46989 * 264.84951 * 3 2 1 5 5 H 1.48497 * 109.47134 * 24.84864 * 3 2 1 6 6 H 1.48498 * 109.46822 * 144.85244 * 3 2 1 7 7 C 1.37879 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00607 * 5.06809 * 7 2 1 9 9 C 1.50702 * 119.99816 * 185.06664 * 7 2 1 10 10 O 1.42901 * 110.91753 * 61.12915 * 9 7 2 11 11 C 1.55439 * 111.12020 * 297.13185 * 9 7 2 12 12 C 1.54326 * 102.97282 * 206.46594 * 11 9 7 13 13 N 1.47027 * 107.27003 * 22.18908 * 12 11 9 14 14 C 1.34771 * 125.64711 * 181.08263 * 13 12 11 15 15 O 1.21553 * 119.99750 * 174.39629 * 14 13 12 16 16 C 1.47842 * 120.00306 * 354.39465 * 14 13 12 17 17 C 1.40018 * 120.55146 * 6.96357 * 16 14 13 18 18 C 1.38356 * 118.31636 * 180.02562 * 17 16 14 19 19 C 1.38336 * 119.31903 * 0.02562 * 18 17 16 20 20 N 1.32037 * 121.06526 * 359.97438 * 19 18 17 21 21 O 1.41605 * 119.07135 * 180.02562 * 20 19 18 22 22 C 1.31811 * 121.84936 * 359.74359 * 20 19 18 23 23 C 1.47424 * 108.69983 * 1.06266 * 13 12 11 24 24 H 0.96997 * 119.99412 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99906 * 62.44134 * 10 9 7 26 26 H 1.08996 * 110.71440 * 88.09012 * 11 9 7 27 27 H 1.09001 * 110.70765 * 324.83452 * 11 9 7 28 28 H 1.09000 * 109.88162 * 262.77460 * 12 11 9 29 29 H 1.08993 * 110.01571 * 141.68026 * 12 11 9 30 30 H 1.07999 * 120.83979 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.34220 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.46475 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.72672 * 180.26739 * 22 20 19 34 34 H 1.09006 * 110.36819 * 94.70805 * 23 13 12 35 35 H 1.08997 * 110.36509 * 216.92008 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6056 1.9835 -1.3944 5 1 1.3966 2.6816 0.5883 6 1 3.4882 1.4738 0.8060 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0836 9 6 3.5071 -1.1968 0.1147 10 8 3.9253 -0.6059 1.3468 11 6 4.1632 -0.4796 -1.0983 12 6 5.5532 -1.1445 -1.1835 13 7 5.4563 -2.4469 -0.5081 14 6 6.4652 -3.3262 -0.3491 15 8 6.2973 -4.3300 0.3155 16 6 7.7760 -3.0700 -0.9830 17 6 8.0289 -1.8532 -1.6280 18 6 9.2715 -1.6627 -2.2060 19 6 10.2157 -2.6708 -2.1299 20 7 9.9496 -3.8086 -1.5150 21 8 10.9476 -4.8117 -1.4618 22 6 8.7830 -4.0347 -0.9447 23 6 4.0728 -2.6313 -0.0333 24 1 -0.4849 0.8401 0.0004 25 1 3.6221 -1.0800 2.1332 26 1 4.2581 0.5895 -0.9089 27 1 3.5922 -0.6618 -2.0087 28 1 6.2936 -0.5212 -0.6822 29 1 5.8349 -1.2879 -2.2266 30 1 7.2730 -1.0832 -1.6739 31 1 9.5018 -0.7365 -2.7115 32 1 11.1862 -2.5248 -2.5806 33 1 8.6036 -4.9764 -0.4472 34 1 3.4926 -3.1943 -0.7645 35 1 4.0672 -3.1425 0.9293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627464368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:08 Heat of formation + Delta-G solvation = -12.882740 kcal Electronic energy + Delta-G solvation = -21663.892896 eV Core-core repulsion = 18244.456911 eV Total energy + Delta-G solvation = -3419.435985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.64333 -41.06217 -39.16051 -36.62698 -35.53296 -34.47628 -33.14211 -32.02586 -31.33959 -30.01435 -27.69114 -26.07722 -25.15798 -23.91763 -21.84962 -21.34721 -19.45027 -18.93005 -18.52912 -18.28116 -17.19670 -16.95330 -16.71628 -16.49743 -16.32828 -16.12667 -15.48246 -15.11055 -14.98258 -14.70588 -14.26775 -13.98971 -13.68579 -13.38284 -13.12235 -12.85017 -12.55991 -12.37549 -12.22362 -12.01719 -11.84068 -11.29568 -10.92604 -10.81653 -10.80648 -10.75396 -10.37372 -10.08108 -9.70695 -8.32322 -6.49274 -0.89032 -0.49629 1.19708 1.41884 1.42371 1.53755 1.73111 1.84300 2.23518 2.44704 3.02651 3.07217 3.27534 3.36006 3.48639 3.55533 3.70047 3.81356 3.98412 4.15812 4.22532 4.37399 4.43579 4.60146 4.64344 4.76570 4.84581 4.96332 5.03546 5.09520 5.43153 5.54795 5.63098 5.76037 6.09052 6.32209 6.62617 6.81279 7.11776 7.32309 8.81889 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.004570 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.371244 B = 6125.120445 C = 6626.609733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.035 3.965 3 Si 0.939 3.061 4 H -0.256 1.256 5 H -0.316 1.316 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.035 0.965 9 C 0.214 3.786 10 O -0.572 6.572 11 C -0.132 4.132 12 C 0.083 3.917 13 N -0.594 5.594 14 C 0.573 3.427 15 O -0.577 6.577 16 C -0.129 4.129 17 C -0.061 4.061 18 C -0.087 4.087 19 C 0.093 3.907 20 N -0.148 5.148 21 O -0.625 6.625 22 C 0.118 3.882 23 C 0.098 3.902 24 H 0.267 0.733 25 H 0.374 0.626 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.215 0.785 31 H 0.235 0.765 32 H 0.211 0.789 33 H 0.169 0.831 34 H 0.069 0.931 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.727 6.831 -7.429 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.181 1.181 5 H -0.245 1.245 6 H -0.134 1.134 7 C -0.592 4.592 8 H 0.054 0.946 9 C 0.174 3.826 10 O -0.379 6.379 11 C -0.170 4.170 12 C -0.037 4.037 13 N -0.325 5.325 14 C 0.361 3.639 15 O -0.458 6.458 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.104 4.104 19 C -0.051 4.051 20 N 0.171 4.829 21 O -0.677 6.677 22 C -0.030 4.030 23 C -0.025 4.025 24 H 0.076 0.924 25 H 0.222 0.778 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.231 0.769 31 H 0.251 0.749 32 H 0.227 0.773 33 H 0.186 0.814 34 H 0.087 0.913 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.171 6.422 -7.477 18.938 hybrid contribution -0.806 -0.718 0.832 1.363 sum 15.365 5.704 -6.645 17.686 Atomic orbital electron populations 1.70085 1.08862 1.28584 1.50237 1.25837 0.95081 1.03583 0.92028 0.86083 0.80583 0.76893 0.80062 1.18091 1.24468 1.13356 1.21361 0.91171 0.93526 1.53125 0.94622 1.20039 0.90902 0.87944 0.83747 1.86422 1.78773 1.56597 1.16139 1.23073 0.95022 1.00412 0.98466 1.22984 0.98717 0.82862 0.99162 1.48339 1.09530 1.19075 1.55516 1.17665 0.83169 0.82425 0.80599 1.90809 1.83166 1.29605 1.42228 1.20078 0.93476 0.96494 1.03334 1.23940 0.99935 0.95625 0.88997 1.22583 0.89868 1.00453 0.97500 1.23766 1.04466 0.83658 0.93220 1.43218 1.08779 1.11490 1.19403 1.97630 1.37386 1.38524 1.94120 1.22433 0.84001 1.01639 0.94908 1.22852 0.80433 0.99713 0.99520 0.92386 0.77771 0.89708 0.88871 0.87133 0.85992 0.76863 0.74883 0.77259 0.81400 0.91272 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.93 13.96 21.45 0.30 -53.63 16 2 C 0.04 1.80 5.47 84.65 0.46 2.26 16 3 Si 0.94 38.27 23.98 68.60 1.64 39.91 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.32 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.21 -7.94 5.48 99.48 0.55 -7.39 16 7 C -0.55 -27.30 8.87 25.60 0.23 -27.07 16 8 H 0.04 2.01 8.03 -2.91 -0.02 1.99 16 9 C 0.21 8.01 0.69 -10.05 -0.01 8.00 16 10 O -0.57 -20.94 10.58 -148.98 -1.58 -22.52 16 11 C -0.13 -3.78 4.77 31.88 0.15 -3.63 16 12 C 0.08 1.56 4.88 86.73 0.42 1.98 16 13 N -0.59 -16.17 3.33 -817.96 -2.72 -18.89 16 14 C 0.57 16.42 7.81 86.79 0.68 17.10 16 15 O -0.58 -21.73 16.62 -3.88 -0.06 -21.79 16 16 C -0.13 -2.67 5.89 -20.00 -0.12 -2.79 16 17 C -0.06 -0.58 8.70 22.73 0.20 -0.38 16 18 C -0.09 -0.37 10.10 22.32 0.23 -0.14 16 19 C 0.09 1.26 10.68 84.69 0.90 2.17 16 20 N -0.15 -3.98 3.57 -194.63 -0.70 -4.67 16 21 O -0.63 -26.23 20.05 -38.79 -0.78 -27.00 16 22 C 0.12 3.06 10.27 85.00 0.87 3.94 16 23 C 0.10 3.39 6.10 86.86 0.53 3.92 16 24 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.37 12.58 9.11 -74.06 -0.67 11.91 16 26 H 0.08 2.36 5.05 -2.39 -0.01 2.35 16 27 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 28 H 0.11 1.42 6.74 -2.39 -0.02 1.40 16 29 H 0.12 1.22 6.73 -2.39 -0.02 1.20 16 30 H 0.22 1.00 2.91 -3.98 -0.01 0.99 16 31 H 0.23 -1.74 8.06 -2.91 -0.02 -1.76 16 32 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.17 5.01 7.68 -2.91 -0.02 4.99 16 34 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 35 H 0.06 2.30 7.98 -2.39 -0.02 2.28 16 Total: -1.00 -87.37 290.72 0.97 -86.40 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.31 Total: 16.85 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.55 Total: 5.36 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.12 Total: -77.19 kcal Atomic # 8 Polarization: -68.90 SS G_CDS: -2.42 Total: -71.32 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.64 Total: 39.91 kcal Total: -87.37 0.97 -86.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627464368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.518 kcal (2) G-P(sol) polarization free energy of solvation -87.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds