Wall clock time and date at job start Tue Mar 31 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34143 * 125.65386 * 2 1 4 4 H 0.97008 * 125.37463 * 359.97438 * 3 2 1 5 5 C 1.37993 * 109.25117 * 179.97438 * 3 2 1 6 6 C 1.41541 * 125.98825 * 180.02562 * 5 3 2 7 7 O 1.21410 * 120.00284 * 359.97438 * 6 5 3 8 8 C 1.37852 * 108.02177 * 359.97438 * 5 3 2 9 9 C 1.38330 * 125.65233 * 179.69017 * 2 1 3 10 10 C 1.47419 * 126.40046 * 0.02562 * 9 2 1 11 11 O 1.21604 * 119.99889 * 359.97438 * 10 9 2 12 12 N 1.34772 * 120.00321 * 179.97438 * 10 9 2 13 13 C 1.47071 * 136.05868 * 359.62621 * 12 10 9 14 14 C 1.53751 * 87.88940 * 152.96439 * 13 12 10 15 15 O 1.42904 * 114.39398 * 272.67490 * 14 13 12 16 16 C 1.50705 * 114.26886 * 139.79062 * 14 13 12 17 17 H 1.07997 * 120.00108 * 266.47956 * 16 14 13 18 18 C 1.37884 * 119.99507 * 86.47074 * 16 14 13 19 19 N 1.31513 * 120.00211 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99337 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47355 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46672 * 120.00465 * 20 18 16 23 23 H 1.48503 * 109.47112 * 240.00133 * 20 18 16 24 24 C 1.47075 * 136.05893 * 179.97438 * 12 10 9 25 25 H 1.09002 * 109.47152 * 90.02276 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02377 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02357 * 1 2 3 28 28 H 1.08002 * 119.99856 * 179.97438 * 6 5 3 29 29 H 1.07998 * 126.58215 * 179.97438 * 8 5 3 30 30 H 1.09003 * 113.46511 * 267.69680 * 13 12 10 31 31 H 1.08999 * 113.46586 * 38.13269 * 13 12 10 32 32 H 0.96693 * 114.00030 * 273.58699 * 15 14 13 33 33 H 0.97005 * 119.99482 * 179.97438 * 19 18 16 34 34 H 1.09002 * 113.46548 * 321.86279 * 24 12 10 35 35 H 1.08999 * 113.46756 * 92.24254 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2889 1.0900 0.0000 4 1 1.9736 2.0074 -0.0004 5 6 3.6127 0.7003 0.0006 6 6 4.7340 1.5641 0.0013 7 8 4.5733 2.7675 0.0009 8 6 3.6517 -0.6777 0.0015 9 6 2.3133 -1.1240 0.0061 10 6 1.8590 -2.5265 0.0131 11 8 0.6698 -2.7804 0.0145 12 7 2.7617 -3.5272 0.0181 13 6 4.2288 -3.6301 0.0119 14 6 4.0801 -4.9847 0.7237 15 8 4.0096 -4.8982 2.1484 16 6 5.0317 -6.0476 0.2379 17 1 4.7250 -6.7331 -0.5382 18 6 6.2940 -6.1445 0.7843 19 7 6.6672 -5.3099 1.7296 20 14 7.4737 -7.4615 0.1815 21 1 6.8171 -8.2661 -0.8799 22 1 8.6940 -6.8185 -0.3688 23 1 7.8482 -8.3463 1.3138 24 6 2.7132 -4.9971 0.0259 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 5.7326 1.1527 0.0021 29 1 4.5367 -1.2965 0.0018 30 1 4.6541 -3.7099 -0.9886 31 1 4.7198 -2.8702 0.6197 32 1 4.8722 -4.8906 2.5851 33 1 7.5552 -5.3785 2.1142 34 1 1.9131 -5.4017 0.6459 35 1 2.7376 -5.4376 -0.9708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633251292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:49 Heat of formation + Delta-G solvation = -35.545560 kcal Electronic energy + Delta-G solvation = -21443.261940 eV Core-core repulsion = 18022.843222 eV Total energy + Delta-G solvation = -3420.418718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = -0.66 seconds Orbital eigenvalues (eV) -41.60319 -39.39623 -38.51589 -37.12378 -34.03342 -32.20589 -32.03891 -31.39182 -28.76220 -27.59655 -25.46812 -25.19078 -23.19576 -21.83849 -20.67248 -19.68947 -18.04797 -17.53254 -17.14500 -16.20321 -15.43032 -15.36599 -15.32779 -15.01776 -14.51637 -14.37888 -14.03649 -13.81355 -13.35423 -12.97968 -12.90849 -12.53529 -12.44449 -12.32226 -11.94376 -11.77765 -11.56781 -11.09751 -10.92249 -10.47511 -10.25050 -10.08171 -9.62495 -9.20259 -9.10846 -8.78876 -8.38161 -8.23317 -7.76881 -6.41886 -4.51883 0.96284 1.94730 2.88092 3.04498 3.12500 3.22545 3.26082 3.65127 3.93760 4.17482 4.48821 4.73884 4.81702 4.97744 5.07026 5.19865 5.47008 5.54098 5.57431 5.68220 5.88462 5.93371 6.08507 6.20981 6.42411 6.48498 6.52438 6.56346 6.68720 6.84396 7.11384 7.20669 7.41130 7.61868 7.79914 8.51013 8.55779 8.85260 9.19761 9.49065 10.64724 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.005017 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.948388 B = 5580.210921 C = 6630.871836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.134 3.866 3 N -0.513 5.513 4 H 0.423 0.577 5 C -0.130 4.130 6 C 0.407 3.593 7 O -0.495 6.495 8 C -0.062 4.062 9 C -0.221 4.221 10 C 0.608 3.392 11 O -0.569 6.569 12 N -0.628 5.628 13 C 0.068 3.932 14 C 0.240 3.760 15 O -0.570 6.570 16 C -0.532 4.532 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.109 3.891 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.165 0.835 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.394 0.606 33 H 0.273 0.727 34 H 0.066 0.934 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 9.301 -3.573 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.008 3.992 3 N -0.107 5.107 4 H 0.261 0.739 5 C -0.237 4.237 6 C 0.271 3.729 7 O -0.372 6.372 8 C -0.087 4.087 9 C -0.230 4.230 10 C 0.399 3.601 11 O -0.452 6.452 12 N -0.360 5.360 13 C -0.055 4.055 14 C 0.198 3.802 15 O -0.383 6.383 16 C -0.570 4.570 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.013 4.013 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.182 0.818 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.250 0.750 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.819 10.191 -3.560 11.822 hybrid contribution 1.293 -0.238 -0.214 1.332 sum -3.526 9.953 -3.774 11.213 Atomic orbital electron populations 1.20683 0.86375 1.04671 1.03843 1.20975 0.94133 0.85300 0.98785 1.41656 1.05736 1.08725 1.54575 0.73889 1.20300 0.85571 0.95469 1.22396 1.22052 0.92869 0.87549 0.70409 1.90557 1.90077 1.18231 1.38377 1.22262 0.97843 0.92252 0.96377 1.19488 0.93095 0.92769 1.17630 1.16730 0.84324 0.82778 0.76235 1.90662 1.15934 1.84474 1.54093 1.49434 1.08978 1.07128 1.70435 1.24370 0.78211 1.01769 1.01143 1.19588 0.90104 0.90249 0.80302 1.86054 1.37662 1.96291 1.18338 1.21486 0.97676 1.16206 1.21680 0.90871 1.25068 0.98011 0.95712 0.94210 1.69271 1.21073 1.36901 1.26658 0.86277 0.80213 0.81128 0.78896 1.19417 1.20667 1.20646 1.23318 0.99708 0.78283 1.00017 0.89979 0.91622 0.87307 0.86455 0.81787 0.90013 0.91401 0.74997 0.91630 0.91512 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.88 36.01 0.36 -0.78 16 2 C 0.13 1.87 7.19 -81.55 -0.59 1.28 16 3 N -0.51 -6.27 5.95 -6.62 -0.04 -6.31 16 4 H 0.42 4.10 8.96 -40.82 -0.37 3.73 16 5 C -0.13 -1.70 6.83 -83.97 -0.57 -2.27 16 6 C 0.41 4.77 11.40 31.99 0.36 5.13 16 7 O -0.49 -7.16 17.86 5.44 0.10 -7.06 16 8 C -0.06 -0.92 9.92 -38.65 -0.38 -1.30 16 9 C -0.22 -3.75 6.13 -105.05 -0.64 -4.39 16 10 C 0.61 12.38 8.06 -12.52 -0.10 12.28 16 11 O -0.57 -12.57 15.53 5.27 0.08 -12.48 16 12 N -0.63 -13.04 3.69 -186.32 -0.69 -13.73 16 13 C 0.07 1.38 6.57 -8.37 -0.06 1.33 16 14 C 0.24 5.55 1.58 -91.13 -0.14 5.41 16 15 O -0.57 -14.40 13.55 -35.23 -0.48 -14.88 16 16 C -0.53 -12.85 8.70 -34.44 -0.30 -13.15 16 17 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 19 N -0.90 -21.91 11.01 55.43 0.61 -21.30 16 20 Si 0.91 18.80 29.54 -169.99 -5.02 13.78 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.11 2.32 8.02 -8.51 -0.07 2.25 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.52 6.42 -51.93 -0.33 1.19 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.16 2.34 5.26 -52.49 -0.28 2.06 16 30 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.07 1.34 6.12 -51.93 -0.32 1.03 16 32 H 0.39 10.00 6.32 45.56 0.29 10.29 16 33 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -29.69 306.01 -6.14 -35.83 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -3.08 Total: 14.12 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.23 Total: 7.42 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.12 Total: -41.33 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.30 Total: -34.42 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.69 -6.14 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633251292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.283 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.66 seconds