Wall clock time and date at job start Tue Mar 31 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34143 * 125.65386 * 2 1 4 4 H 0.97008 * 125.37463 * 359.97438 * 3 2 1 5 5 C 1.37993 * 109.25117 * 179.97438 * 3 2 1 6 6 C 1.41541 * 125.98825 * 180.02562 * 5 3 2 7 7 O 1.21410 * 120.00284 * 359.97438 * 6 5 3 8 8 C 1.37852 * 108.02177 * 359.97438 * 5 3 2 9 9 C 1.38330 * 125.65233 * 179.69017 * 2 1 3 10 10 C 1.47419 * 126.40046 * 0.02562 * 9 2 1 11 11 O 1.21604 * 119.99889 * 359.97438 * 10 9 2 12 12 N 1.34772 * 120.00321 * 179.97438 * 10 9 2 13 13 C 1.47071 * 136.05868 * 359.62621 * 12 10 9 14 14 C 1.53751 * 87.88940 * 152.96439 * 13 12 10 15 15 O 1.42904 * 114.39398 * 272.67490 * 14 13 12 16 16 C 1.50705 * 114.26886 * 139.79062 * 14 13 12 17 17 H 1.07997 * 120.00108 * 266.47956 * 16 14 13 18 18 C 1.37884 * 119.99507 * 86.47074 * 16 14 13 19 19 N 1.31513 * 120.00211 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99337 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47355 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46672 * 120.00465 * 20 18 16 23 23 H 1.48503 * 109.47112 * 240.00133 * 20 18 16 24 24 C 1.47075 * 136.05893 * 179.97438 * 12 10 9 25 25 H 1.09002 * 109.47152 * 90.02276 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02377 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02357 * 1 2 3 28 28 H 1.08002 * 119.99856 * 179.97438 * 6 5 3 29 29 H 1.07998 * 126.58215 * 179.97438 * 8 5 3 30 30 H 1.09003 * 113.46511 * 267.69680 * 13 12 10 31 31 H 1.08999 * 113.46586 * 38.13269 * 13 12 10 32 32 H 0.96693 * 114.00030 * 273.58699 * 15 14 13 33 33 H 0.97005 * 119.99482 * 179.97438 * 19 18 16 34 34 H 1.09002 * 113.46548 * 321.86279 * 24 12 10 35 35 H 1.08999 * 113.46756 * 92.24254 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2889 1.0900 0.0000 4 1 1.9736 2.0074 -0.0004 5 6 3.6127 0.7003 0.0006 6 6 4.7340 1.5641 0.0013 7 8 4.5733 2.7675 0.0009 8 6 3.6517 -0.6777 0.0015 9 6 2.3133 -1.1240 0.0061 10 6 1.8590 -2.5265 0.0131 11 8 0.6698 -2.7804 0.0145 12 7 2.7617 -3.5272 0.0181 13 6 4.2288 -3.6301 0.0119 14 6 4.0801 -4.9847 0.7237 15 8 4.0096 -4.8982 2.1484 16 6 5.0317 -6.0476 0.2379 17 1 4.7250 -6.7331 -0.5382 18 6 6.2940 -6.1445 0.7843 19 7 6.6672 -5.3099 1.7296 20 14 7.4737 -7.4615 0.1815 21 1 6.8171 -8.2661 -0.8799 22 1 8.6940 -6.8185 -0.3688 23 1 7.8482 -8.3463 1.3138 24 6 2.7132 -4.9971 0.0259 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 5.7326 1.1527 0.0021 29 1 4.5367 -1.2965 0.0018 30 1 4.6541 -3.7099 -0.9886 31 1 4.7198 -2.8702 0.6197 32 1 4.8722 -4.8906 2.5851 33 1 7.5552 -5.3785 2.1142 34 1 1.9131 -5.4017 0.6459 35 1 2.7376 -5.4376 -0.9708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633251292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:47 Heat of formation + Delta-G solvation = -57.612314 kcal Electronic energy + Delta-G solvation = -21444.218827 eV Core-core repulsion = 18022.843222 eV Total energy + Delta-G solvation = -3421.375605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.71623 -41.00286 -39.61237 -38.73344 -35.84999 -34.07185 -33.13654 -32.55252 -30.32972 -28.71133 -27.18100 -26.84025 -24.38360 -23.11904 -21.73546 -21.32555 -19.66143 -19.07288 -18.38961 -17.53887 -17.13850 -16.61429 -16.56589 -16.45644 -16.01552 -15.85955 -15.37778 -14.98331 -14.77973 -14.37545 -14.26950 -13.94010 -13.83007 -13.65523 -13.38042 -13.35134 -12.85402 -12.75990 -12.58377 -12.19199 -12.05706 -11.35905 -11.06340 -10.87451 -10.60112 -10.28198 -10.13355 -9.56656 -9.22548 -8.22796 -6.39090 -0.04034 0.67578 1.49397 1.54863 1.64457 1.80727 2.01288 2.18210 2.44290 2.51026 2.99710 3.50319 3.67337 3.77371 3.88807 3.92829 4.19422 4.25023 4.40693 4.55961 4.64427 4.67413 4.70902 4.78942 4.86356 4.97487 5.07812 5.13969 5.30290 5.41461 5.63318 5.78396 5.96837 6.25797 6.46448 6.66855 6.95629 7.26353 7.35495 7.55222 8.83509 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.005017 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.948388 B = 5580.210921 C = 6630.871836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.145 3.855 3 N -0.500 5.500 4 H 0.437 0.563 5 C -0.124 4.124 6 C 0.417 3.583 7 O -0.519 6.519 8 C -0.068 4.068 9 C -0.261 4.261 10 C 0.601 3.399 11 O -0.596 6.596 12 N -0.633 5.633 13 C 0.085 3.915 14 C 0.218 3.782 15 O -0.587 6.587 16 C -0.550 4.550 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.916 5.916 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.284 1.284 24 C 0.108 3.892 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.167 0.833 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.389 0.611 33 H 0.276 0.724 34 H 0.052 0.948 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 10.562 -4.355 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.017 3.983 3 N -0.095 5.095 4 H 0.278 0.722 5 C -0.232 4.232 6 C 0.282 3.718 7 O -0.398 6.398 8 C -0.093 4.093 9 C -0.269 4.269 10 C 0.394 3.606 11 O -0.480 6.480 12 N -0.365 5.365 13 C -0.038 4.038 14 C 0.177 3.823 15 O -0.400 6.400 16 C -0.588 4.588 17 H 0.092 0.908 18 C -0.165 4.165 19 N -0.557 5.557 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.210 1.210 24 C -0.015 4.015 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.176 0.824 29 H 0.184 0.816 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.020 11.479 -4.349 12.917 hybrid contribution 0.999 -0.598 0.055 1.165 sum -3.021 10.881 -4.294 12.082 Atomic orbital electron populations 1.20711 0.84811 1.05040 1.04760 1.21171 0.95071 0.84900 0.97144 1.41680 1.05412 1.09094 1.53328 0.72186 1.20573 0.86303 0.95045 1.21247 1.22604 0.93725 0.86739 0.68758 1.90564 1.90417 1.19345 1.39490 1.22259 0.97126 0.93101 0.96812 1.19375 0.94794 0.91606 1.21133 1.17288 0.83932 0.83979 0.75386 1.90635 1.16905 1.85134 1.55343 1.49471 1.09229 1.06872 1.70922 1.24155 0.78136 1.00099 1.01379 1.19861 0.91104 0.91895 0.79444 1.86039 1.37531 1.96526 1.19872 1.21686 0.98251 1.16822 1.22069 0.90830 1.25708 0.99200 0.97313 0.94304 1.69324 1.21479 1.37775 1.27121 0.85351 0.78382 0.78776 0.78161 1.19227 1.20101 1.21021 1.23329 0.98358 0.79282 1.00487 0.88697 0.88162 0.89937 0.82388 0.81561 0.88703 0.91007 0.75491 0.91348 0.92959 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 9.88 71.24 0.70 -1.36 16 2 C 0.14 3.82 7.19 42.23 0.30 4.12 16 3 N -0.50 -11.02 5.95 -174.84 -1.04 -12.06 16 4 H 0.44 7.20 8.96 -92.70 -0.83 6.37 16 5 C -0.12 -2.95 6.83 38.90 0.27 -2.68 16 6 C 0.42 8.49 11.40 68.63 0.78 9.27 16 7 O -0.52 -13.63 17.86 -3.43 -0.06 -13.69 16 8 C -0.07 -1.92 9.92 22.88 0.23 -1.70 16 9 C -0.26 -8.67 6.13 -20.14 -0.12 -8.79 16 10 C 0.60 24.68 8.06 86.66 0.70 25.38 16 11 O -0.60 -26.82 15.53 -4.04 -0.06 -26.88 16 12 N -0.63 -26.47 3.69 -862.12 -3.18 -29.65 16 13 C 0.09 3.43 6.57 83.27 0.55 3.98 16 14 C 0.22 10.19 1.58 -11.12 -0.02 10.17 16 15 O -0.59 -30.21 13.55 -148.98 -2.02 -32.23 16 16 C -0.55 -26.47 8.70 25.60 0.22 -26.24 16 17 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 18 C 0.04 1.66 5.40 84.66 0.46 2.12 16 19 N -0.92 -44.37 11.01 21.45 0.24 -44.13 16 20 Si 0.97 37.94 29.54 68.60 2.03 39.97 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.11 4.67 8.02 83.17 0.67 5.34 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.29 6.42 -2.38 -0.02 2.28 16 28 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.17 4.52 5.26 -2.91 -0.02 4.50 16 30 H 0.09 3.54 8.10 -2.39 -0.02 3.52 16 31 H 0.07 2.82 6.12 -2.39 -0.01 2.80 16 32 H 0.39 20.18 6.32 -74.06 -0.47 19.71 16 33 H 0.28 12.63 8.31 -92.70 -0.77 11.86 16 34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.10 3.99 8.10 -2.39 -0.02 3.97 16 Total: -1.00 -63.57 306.01 0.50 -63.07 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.14 Total: 36.00 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 4.73 Total: 19.61 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -3.98 Total: -85.84 kcal Atomic # 8 Polarization: -70.66 SS G_CDS: -2.14 Total: -72.80 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -63.57 0.50 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633251292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.457 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds