Wall clock time and date at job start Tue Mar 31 2020 00:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38014 * 120.01969 * 2 1 4 4 C 1.38250 * 120.20377 * 180.25329 * 3 2 1 5 5 C 1.38848 * 120.23995 * 359.74413 * 4 3 2 6 6 O 1.35908 * 119.97953 * 179.97438 * 5 4 3 7 7 C 1.38451 * 120.03350 * 359.97438 * 5 4 3 8 8 C 1.39525 * 119.79388 * 0.02562 * 7 5 4 9 9 C 1.47857 * 120.11774 * 179.97438 * 8 7 5 10 10 O 1.21548 * 120.00030 * 173.73974 * 9 8 7 11 11 N 1.34778 * 120.00139 * 353.73290 * 9 8 7 12 12 C 1.46502 * 120.00058 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.46738 * 180.02562 * 12 11 9 14 14 O 1.21289 * 120.00451 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99758 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.07994 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99711 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99506 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00328 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46813 * 90.00233 * 20 18 16 22 22 H 1.48503 * 109.46884 * 210.00101 * 20 18 16 23 23 H 1.48495 * 109.46942 * 330.00151 * 20 18 16 24 24 H 1.09004 * 109.47473 * 263.65021 * 1 2 3 25 25 H 1.09002 * 109.47185 * 23.64769 * 1 2 3 26 26 H 1.09002 * 109.47308 * 143.64768 * 1 2 3 27 27 H 1.07992 * 119.89364 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.87447 * 179.71981 * 4 3 2 29 29 H 0.96701 * 114.00012 * 270.01712 * 6 5 4 30 30 H 1.07999 * 120.10327 * 180.02562 * 7 5 4 31 31 H 0.96998 * 119.99615 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.46664 * 60.00585 * 12 11 9 33 33 H 1.08994 * 109.47130 * 300.00296 * 12 11 9 34 34 H 0.97001 * 119.99808 * 0.02562 * 15 13 12 35 35 H 0.97001 * 119.99644 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1950 0.0000 4 6 3.5799 1.1994 -0.0053 5 6 4.2830 0.0022 -0.0053 6 8 5.6420 0.0127 -0.0110 7 6 3.6004 -1.2024 0.0006 8 6 2.2051 -1.2085 0.0059 9 6 1.4689 -2.4907 0.0116 10 8 0.2593 -2.4964 0.1310 11 7 2.1389 -3.6531 -0.1157 12 6 1.4093 -4.9236 -0.1106 13 6 2.3834 -6.0628 -0.2661 14 8 3.5704 -5.8359 -0.3704 15 7 1.9357 -7.3338 -0.2893 16 6 2.8219 -8.3703 -0.4303 17 1 3.8788 -8.1683 -0.5231 18 6 2.3602 -9.6807 -0.4547 19 7 3.2097 -10.6741 -0.5903 20 14 0.5321 -10.0300 -0.2948 21 1 -0.0880 -10.0488 -1.6439 22 1 0.3356 -11.3489 0.3589 23 1 -0.1042 -8.9701 0.5278 24 1 -0.3634 -0.1137 1.0214 25 1 -0.3633 0.9414 -0.4122 26 1 -0.3634 -0.8277 -0.6091 27 1 1.6560 2.1294 -0.0004 28 1 4.1148 2.1376 -0.0098 29 1 6.0316 0.0138 -0.8961 30 1 4.1461 -2.1343 0.0010 31 1 3.1042 -3.6486 -0.2107 32 1 0.6985 -4.9375 -0.9368 33 1 0.8729 -5.0307 0.8321 34 1 0.9864 -7.5152 -0.2063 35 1 2.8874 -11.5889 -0.6070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640242307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:24 Heat of formation + Delta-G solvation = -85.405054 kcal Electronic energy + Delta-G solvation = -20592.479861 eV Core-core repulsion = 17169.899072 eV Total energy + Delta-G solvation = -3422.580788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.59591 -39.18103 -38.32071 -36.84225 -34.70736 -33.91415 -31.89601 -31.75460 -31.55010 -28.04615 -26.47641 -24.63342 -23.64276 -21.77012 -20.56878 -19.72656 -19.03916 -18.30408 -17.08284 -16.28340 -15.89704 -15.72508 -15.50356 -15.21861 -15.01944 -14.73874 -14.26374 -13.94242 -13.70244 -13.28886 -13.13705 -12.71776 -12.52796 -12.21771 -12.17016 -12.04453 -11.87459 -11.65251 -11.26160 -10.97200 -10.66834 -10.09069 -9.73096 -9.63862 -9.30723 -8.97085 -8.81888 -8.64204 -8.33670 -6.43518 -3.96313 0.63136 1.00381 2.74090 2.97330 3.01954 3.09808 3.17932 3.50418 3.58610 3.94785 4.01049 4.46804 4.56259 4.61438 4.75520 4.97911 5.11159 5.13220 5.39748 5.53369 5.57650 5.67136 5.73561 5.74426 5.76364 5.89672 6.08018 6.10040 6.34918 6.47351 6.57436 7.40336 7.41320 7.64174 7.96907 8.25526 8.42217 8.78594 9.26536 9.59524 10.68577 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.003616 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.041085 B = 7742.264166 C = 8690.960175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.032 4.032 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.090 3.910 6 O -0.496 6.496 7 C -0.105 4.105 8 C -0.119 4.119 9 C 0.556 3.444 10 O -0.538 6.538 11 N -0.702 5.702 12 C 0.106 3.894 13 C 0.437 3.563 14 O -0.579 6.579 15 N -0.575 5.575 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.267 1.267 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.391 0.609 30 H 0.138 0.862 31 H 0.411 0.589 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.375 0.625 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 21.450 -0.360 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.046 3.954 6 O -0.306 6.306 7 C -0.124 4.124 8 C -0.122 4.122 9 C 0.343 3.657 10 O -0.417 6.417 11 N -0.356 5.356 12 C -0.021 4.021 13 C 0.223 3.777 14 O -0.464 6.464 15 N -0.212 5.212 16 C -0.440 4.440 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.192 1.192 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.247 0.753 30 H 0.156 0.844 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.208 0.792 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.964 21.281 0.243 21.648 hybrid contribution -0.669 -0.571 -0.381 0.959 sum -4.633 20.710 -0.138 21.222 Atomic orbital electron populations 1.21079 0.89735 1.03010 1.03792 1.20087 0.97154 0.91276 0.94797 1.20925 0.93450 0.97680 1.01521 1.21599 0.94534 0.97979 0.99532 1.18276 0.83177 0.91906 1.02085 1.84861 1.15705 1.96405 1.33658 1.21733 0.93421 0.98817 0.98425 1.19663 0.92854 0.93428 1.06241 1.18140 0.87037 0.83483 0.76994 1.90708 1.13531 1.87193 1.50283 1.45650 1.12324 1.04713 1.72953 1.21005 0.94566 0.83094 1.03460 1.19616 0.89197 0.83691 0.85246 1.90539 1.16687 1.83545 1.55599 1.42118 1.08918 1.05611 1.64576 1.19447 0.92935 0.83652 1.47917 0.86059 1.25071 0.98503 0.95226 0.97071 1.69619 1.34385 0.99544 1.47659 0.86665 0.84568 0.79099 0.79135 1.19368 1.19944 1.19217 0.90580 0.92506 0.88477 0.84932 0.85033 0.75282 0.84390 0.74929 0.89469 0.89476 0.79215 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.72 36.00 0.31 -0.99 16 2 C -0.03 -0.37 5.91 -104.21 -0.62 -0.99 16 3 C -0.12 -1.10 9.66 -39.66 -0.38 -1.48 16 4 C -0.12 -1.09 9.98 -39.35 -0.39 -1.48 16 5 C 0.09 0.97 6.70 -39.28 -0.26 0.70 16 6 O -0.50 -4.84 13.50 -19.45 -0.26 -5.10 16 7 C -0.10 -1.27 9.46 -39.02 -0.37 -1.64 16 8 C -0.12 -1.57 5.87 -104.98 -0.62 -2.18 16 9 C 0.56 8.57 7.70 -12.32 -0.09 8.48 16 10 O -0.54 -9.12 13.34 5.32 0.07 -9.05 16 11 N -0.70 -11.28 5.48 -62.43 -0.34 -11.62 16 12 C 0.11 1.81 6.15 -5.20 -0.03 1.78 16 13 C 0.44 9.50 7.85 -10.99 -0.09 9.41 16 14 O -0.58 -14.51 15.24 5.55 0.08 -14.42 16 15 N -0.57 -13.22 5.09 -10.97 -0.06 -13.28 16 16 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 17 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 18 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.87 -24.80 13.96 55.50 0.77 -24.02 16 20 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.47 8.04 -51.93 -0.42 0.06 16 26 H 0.10 1.25 5.86 -51.93 -0.30 0.95 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.39 1.95 9.06 45.56 0.41 2.36 16 30 H 0.14 1.66 6.45 -52.49 -0.34 1.32 16 31 H 0.41 6.59 5.51 -40.82 -0.22 6.37 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 35 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -32.95 305.66 -5.40 -38.36 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -2.78 Total: 16.36 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.79 Total: 4.07 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.38 Total: -48.93 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.11 Total: -28.57 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.95 -5.40 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640242307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.048 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds