Wall clock time and date at job start Tue Mar 31 2020 00:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38014 * 120.01969 * 2 1 4 4 C 1.38250 * 120.20377 * 180.25329 * 3 2 1 5 5 C 1.38848 * 120.23995 * 359.74413 * 4 3 2 6 6 O 1.35908 * 119.97953 * 179.97438 * 5 4 3 7 7 C 1.38451 * 120.03350 * 359.97438 * 5 4 3 8 8 C 1.39525 * 119.79388 * 0.02562 * 7 5 4 9 9 C 1.47857 * 120.11774 * 179.97438 * 8 7 5 10 10 O 1.21548 * 120.00030 * 173.73974 * 9 8 7 11 11 N 1.34778 * 120.00139 * 353.73290 * 9 8 7 12 12 C 1.46502 * 120.00058 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.46738 * 180.02562 * 12 11 9 14 14 O 1.21289 * 120.00451 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99758 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.07994 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99711 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99506 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00328 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46813 * 90.00233 * 20 18 16 22 22 H 1.48503 * 109.46884 * 210.00101 * 20 18 16 23 23 H 1.48495 * 109.46942 * 330.00151 * 20 18 16 24 24 H 1.09004 * 109.47473 * 263.65021 * 1 2 3 25 25 H 1.09002 * 109.47185 * 23.64769 * 1 2 3 26 26 H 1.09002 * 109.47308 * 143.64768 * 1 2 3 27 27 H 1.07992 * 119.89364 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.87447 * 179.71981 * 4 3 2 29 29 H 0.96701 * 114.00012 * 270.01712 * 6 5 4 30 30 H 1.07999 * 120.10327 * 180.02562 * 7 5 4 31 31 H 0.96998 * 119.99615 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.46664 * 60.00585 * 12 11 9 33 33 H 1.08994 * 109.47130 * 300.00296 * 12 11 9 34 34 H 0.97001 * 119.99808 * 0.02562 * 15 13 12 35 35 H 0.97001 * 119.99644 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1950 0.0000 4 6 3.5799 1.1994 -0.0053 5 6 4.2830 0.0022 -0.0053 6 8 5.6420 0.0127 -0.0110 7 6 3.6004 -1.2024 0.0006 8 6 2.2051 -1.2085 0.0059 9 6 1.4689 -2.4907 0.0116 10 8 0.2593 -2.4964 0.1310 11 7 2.1389 -3.6531 -0.1157 12 6 1.4093 -4.9236 -0.1106 13 6 2.3834 -6.0628 -0.2661 14 8 3.5704 -5.8359 -0.3704 15 7 1.9357 -7.3338 -0.2893 16 6 2.8219 -8.3703 -0.4303 17 1 3.8788 -8.1683 -0.5231 18 6 2.3602 -9.6807 -0.4547 19 7 3.2097 -10.6741 -0.5903 20 14 0.5321 -10.0300 -0.2948 21 1 -0.0880 -10.0488 -1.6439 22 1 0.3356 -11.3489 0.3589 23 1 -0.1042 -8.9701 0.5278 24 1 -0.3634 -0.1137 1.0214 25 1 -0.3633 0.9414 -0.4122 26 1 -0.3634 -0.8277 -0.6091 27 1 1.6560 2.1294 -0.0004 28 1 4.1148 2.1376 -0.0098 29 1 6.0316 0.0138 -0.8961 30 1 4.1461 -2.1343 0.0010 31 1 3.1042 -3.6486 -0.2107 32 1 0.6985 -4.9375 -0.9368 33 1 0.8729 -5.0307 0.8321 34 1 0.9864 -7.5152 -0.2063 35 1 2.8874 -11.5889 -0.6070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640242307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:24 Heat of formation + Delta-G solvation = -112.249620 kcal Electronic energy + Delta-G solvation = -20593.643928 eV Core-core repulsion = 17169.899072 eV Total energy + Delta-G solvation = -3423.744856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63496 -40.52810 -39.72817 -37.68828 -36.35405 -35.53041 -33.86848 -32.64337 -32.47586 -29.48394 -27.43871 -26.30780 -24.69269 -22.65927 -21.67306 -21.49287 -20.62766 -19.63493 -18.21505 -17.42640 -17.33323 -16.88269 -16.73066 -16.52405 -16.23295 -16.05564 -15.63900 -15.22047 -14.82124 -14.60396 -14.33653 -14.27329 -14.00872 -13.63887 -13.42278 -12.98345 -12.93607 -12.71028 -12.48431 -12.46378 -12.01459 -11.75679 -11.60121 -10.75730 -10.69440 -10.37220 -10.29914 -10.03750 -9.48904 -8.47306 -6.09742 -0.25378 0.20204 1.30144 1.32986 1.43247 1.70797 1.78111 1.92477 2.19395 2.66372 2.82364 3.08847 3.19183 3.62591 3.77263 3.95310 3.97556 4.15547 4.33872 4.37925 4.38321 4.63644 4.76011 4.85134 4.90525 5.06144 5.15582 5.30863 5.35586 5.46978 5.55177 5.76862 5.85880 6.38980 6.46434 6.75821 6.82079 7.03708 7.26616 7.75290 8.69166 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.003616 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.041085 B = 7742.264166 C = 8690.960175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.108 4.108 4 C -0.108 4.108 5 C 0.087 3.913 6 O -0.507 6.507 7 C -0.120 4.120 8 C -0.140 4.140 9 C 0.556 3.444 10 O -0.555 6.555 11 N -0.709 5.709 12 C 0.118 3.882 13 C 0.443 3.557 14 O -0.616 6.616 15 N -0.576 5.576 16 C -0.333 4.333 17 H 0.063 0.937 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.960 3.040 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.232 1.232 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.167 0.833 28 H 0.161 0.839 29 H 0.411 0.589 30 H 0.128 0.872 31 H 0.410 0.590 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.393 0.607 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 24.020 -0.141 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.125 4.125 4 C -0.127 4.127 5 C 0.042 3.958 6 O -0.321 6.321 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.346 3.654 10 O -0.436 6.436 11 N -0.363 5.363 12 C -0.009 4.009 13 C 0.230 3.770 14 O -0.502 6.502 15 N -0.215 5.215 16 C -0.462 4.462 17 H 0.081 0.919 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.156 1.156 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.185 0.815 28 H 0.179 0.821 29 H 0.270 0.730 30 H 0.146 0.854 31 H 0.249 0.751 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.229 0.771 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.292 23.882 0.452 24.702 hybrid contribution 0.235 -1.238 -0.473 1.346 sum -6.057 22.645 -0.021 23.441 Atomic orbital electron populations 1.21015 0.89409 1.03598 1.03170 1.20307 0.97576 0.91501 0.95015 1.21282 0.93588 0.98028 0.99641 1.21931 0.94676 0.98421 0.97636 1.18409 0.83621 0.91995 1.01751 1.84808 1.15304 1.96353 1.35610 1.21725 0.93250 0.99312 0.99611 1.19579 0.93179 0.92901 1.08610 1.18501 0.86938 0.83867 0.76130 1.90698 1.14213 1.87503 1.51159 1.45715 1.12270 1.04728 1.73585 1.20930 0.93278 0.81398 1.05315 1.20507 0.89478 0.84393 0.82579 1.90527 1.18970 1.84333 1.56377 1.41911 1.09181 1.05066 1.65388 1.19035 0.91387 0.85715 1.50090 0.91926 1.26084 1.04893 0.94120 0.95658 1.69783 1.37589 1.00329 1.48790 0.85431 0.76673 0.79723 0.80207 1.17980 1.19801 1.15563 0.91107 0.89631 0.90790 0.81547 0.82106 0.72963 0.85430 0.75108 0.87257 0.87535 0.77136 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.72 71.23 0.62 -1.68 16 2 C -0.04 -0.91 5.91 -19.60 -0.12 -1.03 16 3 C -0.11 -1.63 9.66 22.22 0.21 -1.41 16 4 C -0.11 -1.64 9.98 22.42 0.22 -1.41 16 5 C 0.09 1.72 6.70 22.47 0.15 1.87 16 6 O -0.51 -9.11 13.50 -92.51 -1.25 -10.36 16 7 C -0.12 -2.88 9.46 22.63 0.21 -2.66 16 8 C -0.14 -3.60 5.87 -20.10 -0.12 -3.72 16 9 C 0.56 16.96 7.70 86.79 0.67 17.63 16 10 O -0.55 -18.40 13.34 -3.87 -0.05 -18.45 16 11 N -0.71 -22.72 5.48 -469.71 -2.57 -25.29 16 12 C 0.12 3.89 6.15 85.63 0.53 4.41 16 13 C 0.44 19.43 7.85 87.65 0.69 20.12 16 14 O -0.62 -32.07 15.24 -3.06 -0.05 -32.12 16 15 N -0.58 -26.46 5.09 -306.99 -1.56 -28.02 16 16 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 17 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 18 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 19 N -0.93 -54.37 13.96 21.66 0.30 -54.06 16 20 Si 0.96 37.91 27.74 68.60 1.90 39.81 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 26 H 0.07 1.84 5.86 -2.39 -0.01 1.83 16 27 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 28 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.41 3.44 9.06 -74.06 -0.67 2.76 16 30 H 0.13 3.22 6.45 -2.91 -0.02 3.20 16 31 H 0.41 13.52 5.51 -92.71 -0.51 13.01 16 32 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.39 15.04 5.76 -92.71 -0.53 14.51 16 35 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -75.44 305.66 0.51 -74.93 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.60 Total: 39.49 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 4.39 Total: 14.08 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.83 Total: -107.37 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -1.35 Total: -60.93 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -75.44 0.51 -74.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640242307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.324 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds