Wall clock time and date at job start Mon Mar 30 2020 23:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48495 * 109.47252 * 269.99949 * 3 2 1 5 5 H 1.48507 * 109.46876 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47342 * 149.99531 * 3 2 1 7 7 C 1.37881 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00048 * 175.75210 * 7 2 1 9 9 C 1.50702 * 119.99671 * 356.03077 * 7 2 1 10 10 H 1.08999 * 109.46709 * 175.62578 * 9 7 2 11 11 C 1.50699 * 109.47595 * 55.62523 * 9 7 2 12 12 O 1.21273 * 120.00324 * 239.99779 * 11 9 7 13 13 N 1.34774 * 119.99843 * 59.99815 * 11 9 7 14 14 N 1.40092 * 120.00227 * 180.02562 * 13 11 9 15 15 C 1.34784 * 120.00301 * 179.97438 * 14 13 11 16 16 O 1.21273 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99917 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.47057 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47066 * 295.62361 * 9 7 2 20 20 C 1.38233 * 120.00300 * 346.67046 * 19 9 7 21 21 C 1.38238 * 120.00241 * 179.80734 * 20 19 9 22 22 C 1.38234 * 119.99832 * 0.40398 * 21 20 19 23 23 C 1.38236 * 120.00078 * 359.84890 * 22 21 20 24 24 C 1.38228 * 119.99966 * 359.96032 * 23 22 21 25 25 H 0.97001 * 120.00086 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00455 * 0.02562 * 13 11 9 27 27 H 0.96999 * 119.99873 * 0.02562 * 14 13 11 28 28 H 1.09004 * 109.47392 * 300.00420 * 17 15 14 29 29 H 1.09009 * 109.47199 * 60.00017 * 17 15 14 30 30 H 0.96703 * 113.99782 * 180.02562 * 18 17 15 31 31 H 1.08000 * 119.99893 * 359.97438 * 20 19 9 32 32 H 1.07998 * 119.99698 * 180.23020 * 21 20 19 33 33 H 1.08000 * 119.99915 * 179.83249 * 22 21 20 34 34 H 1.08000 * 119.99781 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.00245 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0823 -1.1954 -0.0687 9 6 1.2537 -2.4975 0.0915 10 1 1.9544 -3.3275 0.0000 11 6 0.2393 -2.5716 -1.0205 12 8 -0.9400 -2.6803 -0.7592 13 7 0.6426 -2.5172 -2.3053 14 7 -0.3005 -2.5855 -3.3390 15 6 0.1027 -2.5305 -4.6239 16 8 1.2820 -2.4214 -4.8852 17 6 -0.9117 -2.6046 -5.7358 18 8 -0.2434 -2.5257 -6.9965 19 6 0.5488 -2.5795 1.4209 20 6 0.8708 -1.6912 2.4299 21 6 0.2213 -1.7639 3.6481 22 6 -0.7442 -2.7301 3.8599 23 6 -1.0626 -3.6218 2.8527 24 6 -0.4159 -3.5466 1.6333 25 1 -0.4850 0.8400 -0.0004 26 1 1.5858 -2.4306 -2.5144 27 1 -1.2438 -2.6717 -3.1300 28 1 -1.4545 -3.5476 -5.6703 29 1 -1.6127 -1.7748 -5.6441 30 1 -0.8363 -2.5669 -7.7593 31 1 1.6279 -0.9387 2.2657 32 1 0.4703 -1.0675 4.4351 33 1 -1.2497 -2.7886 4.8125 34 1 -1.8166 -4.3769 3.0184 35 1 -0.6643 -4.2435 0.8464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641424629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:32 Heat of formation + Delta-G solvation = -57.553366 kcal Electronic energy + Delta-G solvation = -21610.273918 eV Core-core repulsion = 18188.900869 eV Total energy + Delta-G solvation = -3421.373048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74003 -38.79652 -37.47650 -36.37540 -34.49569 -33.72019 -31.10068 -30.73321 -29.76667 -27.82054 -26.66584 -23.98059 -21.39646 -21.02664 -20.86833 -19.52952 -18.02330 -17.26272 -16.68872 -16.29516 -15.78934 -15.51073 -15.16861 -14.76589 -14.36476 -14.08912 -13.80417 -13.63309 -13.17856 -12.68968 -12.40155 -12.34009 -12.19479 -12.18520 -11.41819 -10.99328 -10.82762 -10.63582 -10.41994 -10.34117 -10.10038 -9.79319 -9.71205 -9.49162 -8.87632 -8.51588 -7.78670 -7.53778 -7.49366 -6.23765 -4.38710 2.30038 2.51236 2.57734 2.74931 3.19562 3.28256 3.29449 3.98922 4.19361 4.28670 4.67034 4.89229 4.98170 5.04064 5.11523 5.28954 5.79067 5.89679 5.98028 6.21902 6.36342 6.58630 6.66550 6.77684 7.03414 7.11157 7.25084 7.44157 7.45834 7.50608 7.56040 7.63012 7.69046 8.05983 8.17506 8.39175 8.53362 8.67203 9.29119 9.49417 10.77715 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.006071 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.342558 B = 4611.011833 C = 5798.177666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.068 3.932 10 H 0.065 0.935 11 C 0.555 3.445 12 O -0.548 6.548 13 N -0.526 5.526 14 N -0.515 5.515 15 C 0.501 3.499 16 O -0.531 6.531 17 C 0.071 3.929 18 O -0.547 6.547 19 C -0.016 4.016 20 C -0.069 4.069 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.099 4.099 25 H 0.266 0.734 26 H 0.428 0.572 27 H 0.425 0.575 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.385 0.615 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -5.230 -4.140 7.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.046 3.954 10 H 0.083 0.917 11 C 0.344 3.656 12 O -0.423 6.423 13 N -0.277 5.277 14 N -0.261 5.261 15 C 0.285 3.715 16 O -0.405 6.405 17 C -0.011 4.011 18 O -0.351 6.351 19 C -0.017 4.017 20 C -0.086 4.086 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.118 4.118 25 H 0.077 0.923 26 H 0.270 0.730 27 H 0.266 0.734 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.232 0.768 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.343 -5.061 -3.748 7.130 hybrid contribution -0.486 1.257 -0.412 1.409 sum -3.829 -3.804 -4.160 6.815 Atomic orbital electron populations 1.70016 1.05533 1.27269 1.44853 1.25073 0.94913 0.99493 0.93872 0.86606 0.80100 0.83162 0.78490 1.20431 1.21017 1.19332 1.20760 0.93455 0.88552 1.55448 0.90996 1.17791 0.92005 0.98872 0.86771 0.91728 1.21626 0.90982 0.72118 0.80837 1.90538 1.18809 1.50316 1.82635 1.45259 1.05337 1.78615 0.98520 1.44532 1.07581 1.74006 0.99981 1.20333 0.90440 0.78567 0.82172 1.90727 1.17717 1.49141 1.82963 1.21643 0.92925 1.02349 0.84214 1.86587 1.37172 1.97251 1.14117 1.19735 0.94483 0.92680 0.94845 1.21184 0.98868 0.97232 0.91354 1.21011 0.98552 0.99100 0.97772 1.20805 0.99503 0.97388 0.98381 1.20833 1.00888 1.00043 0.94353 1.20985 0.96236 0.98961 0.95585 0.92346 0.73045 0.73403 0.90314 0.90251 0.76804 0.85263 0.87854 0.88068 0.87962 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.48 11.04 55.43 0.61 -21.86 16 2 C 0.07 1.87 3.93 -17.82 -0.07 1.80 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.11 7.11 -34.44 -0.24 -13.36 16 8 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.07 1.56 2.78 -94.08 -0.26 1.30 16 10 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 11 C 0.55 12.68 5.45 -10.99 -0.06 12.62 16 12 O -0.55 -13.54 13.72 5.56 0.08 -13.46 16 13 N -0.53 -10.93 6.16 31.22 0.19 -10.74 16 14 N -0.52 -9.10 6.26 31.22 0.20 -8.90 16 15 C 0.50 8.48 8.02 -10.98 -0.09 8.39 16 16 O -0.53 -11.33 16.34 -14.35 -0.23 -11.56 16 17 C 0.07 0.79 7.53 36.01 0.27 1.07 16 18 O -0.55 -6.62 13.19 -55.14 -0.73 -7.35 16 19 C -0.02 -0.37 4.59 -104.62 -0.48 -0.85 16 20 C -0.07 -1.54 8.39 -39.58 -0.33 -1.87 16 21 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 22 C -0.14 -2.70 10.05 -39.58 -0.40 -3.09 16 23 C -0.14 -2.79 10.05 -39.59 -0.40 -3.19 16 24 C -0.10 -2.14 8.21 -39.58 -0.32 -2.47 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.43 8.92 7.89 -182.60 -1.44 7.48 16 27 H 0.43 6.78 8.00 -182.60 -1.46 5.32 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.38 2.18 9.12 45.56 0.42 2.60 16 31 H 0.13 3.00 6.05 -52.49 -0.32 2.68 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.11 2.29 6.99 -52.48 -0.37 1.92 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -33.31 306.48 -8.32 -41.63 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -5.25 Total: 15.68 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.78 Total: -2.98 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 1.00 Total: -41.51 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.89 Total: -32.37 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.31 -8.32 -41.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641424629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.922 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds