Wall clock time and date at job start Mon Mar 30 2020 23:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48495 * 109.47252 * 269.99949 * 3 2 1 5 5 H 1.48507 * 109.46876 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47342 * 149.99531 * 3 2 1 7 7 C 1.37881 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00048 * 175.75210 * 7 2 1 9 9 C 1.50702 * 119.99671 * 356.03077 * 7 2 1 10 10 H 1.08999 * 109.46709 * 175.62578 * 9 7 2 11 11 C 1.50699 * 109.47595 * 55.62523 * 9 7 2 12 12 O 1.21273 * 120.00324 * 239.99779 * 11 9 7 13 13 N 1.34774 * 119.99843 * 59.99815 * 11 9 7 14 14 N 1.40092 * 120.00227 * 180.02562 * 13 11 9 15 15 C 1.34784 * 120.00301 * 179.97438 * 14 13 11 16 16 O 1.21273 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99917 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.47057 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47066 * 295.62361 * 9 7 2 20 20 C 1.38233 * 120.00300 * 346.67046 * 19 9 7 21 21 C 1.38238 * 120.00241 * 179.80734 * 20 19 9 22 22 C 1.38234 * 119.99832 * 0.40398 * 21 20 19 23 23 C 1.38236 * 120.00078 * 359.84890 * 22 21 20 24 24 C 1.38228 * 119.99966 * 359.96032 * 23 22 21 25 25 H 0.97001 * 120.00086 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00455 * 0.02562 * 13 11 9 27 27 H 0.96999 * 119.99873 * 0.02562 * 14 13 11 28 28 H 1.09004 * 109.47392 * 300.00420 * 17 15 14 29 29 H 1.09009 * 109.47199 * 60.00017 * 17 15 14 30 30 H 0.96703 * 113.99782 * 180.02562 * 18 17 15 31 31 H 1.08000 * 119.99893 * 359.97438 * 20 19 9 32 32 H 1.07998 * 119.99698 * 180.23020 * 21 20 19 33 33 H 1.08000 * 119.99915 * 179.83249 * 22 21 20 34 34 H 1.08000 * 119.99781 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.00245 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0823 -1.1954 -0.0687 9 6 1.2537 -2.4975 0.0915 10 1 1.9544 -3.3275 0.0000 11 6 0.2393 -2.5716 -1.0205 12 8 -0.9400 -2.6803 -0.7592 13 7 0.6426 -2.5172 -2.3053 14 7 -0.3005 -2.5855 -3.3390 15 6 0.1027 -2.5305 -4.6239 16 8 1.2820 -2.4214 -4.8852 17 6 -0.9117 -2.6046 -5.7358 18 8 -0.2434 -2.5257 -6.9965 19 6 0.5488 -2.5795 1.4209 20 6 0.8708 -1.6912 2.4299 21 6 0.2213 -1.7639 3.6481 22 6 -0.7442 -2.7301 3.8599 23 6 -1.0626 -3.6218 2.8527 24 6 -0.4159 -3.5466 1.6333 25 1 -0.4850 0.8400 -0.0004 26 1 1.5858 -2.4306 -2.5144 27 1 -1.2438 -2.6717 -3.1300 28 1 -1.4545 -3.5476 -5.6703 29 1 -1.6127 -1.7748 -5.6441 30 1 -0.8363 -2.5669 -7.7593 31 1 1.6279 -0.9387 2.2657 32 1 0.4703 -1.0675 4.4351 33 1 -1.2497 -2.7886 4.8125 34 1 -1.8166 -4.3769 3.0184 35 1 -0.6643 -4.2435 0.8464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641424629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:32 Heat of formation + Delta-G solvation = -82.890582 kcal Electronic energy + Delta-G solvation = -21611.372622 eV Core-core repulsion = 18188.900869 eV Total energy + Delta-G solvation = -3422.471753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25995 -40.34877 -39.04967 -37.38322 -36.06642 -35.54710 -32.83665 -32.27405 -31.36342 -29.26043 -28.04090 -25.78374 -22.99638 -22.61611 -22.31293 -21.14536 -19.15426 -18.93846 -18.14082 -17.72745 -17.07182 -17.04248 -16.80179 -16.42539 -15.88413 -15.58438 -15.38077 -15.11532 -14.66223 -14.35992 -14.01605 -13.94654 -13.76721 -13.39081 -13.06960 -12.79577 -12.58032 -12.36631 -12.08628 -11.77588 -11.45257 -11.26952 -11.15602 -11.10266 -10.75549 -10.33798 -9.39004 -9.15088 -9.10764 -8.15569 -6.32544 0.79237 0.90911 1.11581 1.38044 1.42250 1.44058 1.50163 2.23944 2.42474 3.05797 3.13641 3.32002 3.75180 3.84442 4.27021 4.33577 4.36083 4.37588 4.48699 4.56174 4.68910 4.94453 5.02432 5.13754 5.43700 5.52127 5.66716 5.85754 5.89216 5.91445 5.96359 5.97593 6.39348 6.51515 6.68137 6.84547 6.90960 7.09849 7.36527 7.78098 8.84377 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.006071 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.342558 B = 4611.011833 C = 5798.177666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.057 3.943 10 H 0.076 0.924 11 C 0.556 3.444 12 O -0.570 6.570 13 N -0.531 5.531 14 N -0.512 5.512 15 C 0.494 3.506 16 O -0.581 6.581 17 C 0.081 3.919 18 O -0.577 6.577 19 C -0.037 4.037 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.259 0.741 26 H 0.426 0.574 27 H 0.434 0.566 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.412 0.588 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -5.604 -3.929 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.035 3.965 10 H 0.094 0.906 11 C 0.346 3.654 12 O -0.447 6.447 13 N -0.280 5.280 14 N -0.259 5.259 15 C 0.282 3.718 16 O -0.459 6.459 17 C 0.000 4.000 18 O -0.387 6.387 19 C -0.038 4.038 20 C -0.110 4.110 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.266 0.734 27 H 0.276 0.724 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.264 0.736 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.542 -5.447 -3.563 7.937 hybrid contribution -0.103 1.308 -0.510 1.408 sum -4.646 -4.139 -4.073 7.437 Atomic orbital electron populations 1.70144 1.06562 1.26996 1.46738 1.25538 0.95278 1.01599 0.93834 0.85852 0.79500 0.80437 0.77773 1.21293 1.21410 1.18344 1.20947 0.93536 0.89249 1.54146 0.90972 1.17909 0.92465 0.98681 0.87469 0.90642 1.21467 0.90540 0.71917 0.81449 1.90503 1.19482 1.51587 1.83116 1.45103 1.05951 1.77762 0.99173 1.44748 1.07366 1.74153 0.99643 1.21636 0.91060 0.76497 0.82650 1.90699 1.20270 1.51354 1.83593 1.21733 0.90781 1.05713 0.81804 1.86511 1.39339 1.97484 1.15369 1.19798 0.95502 0.93714 0.94807 1.21170 0.99675 0.97442 0.92708 1.21327 0.98316 0.99797 0.97415 1.21217 0.98665 0.96116 0.99685 1.21214 1.00784 1.00610 0.93523 1.21066 0.96636 0.98975 0.96674 0.93210 0.73351 0.72419 0.86195 0.87196 0.73585 0.86914 0.85490 0.84327 0.84966 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.96 11.04 21.45 0.24 -46.72 16 2 C 0.04 2.15 3.93 84.66 0.33 2.48 16 3 Si 0.94 41.36 29.54 68.60 2.03 43.39 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -26.44 7.11 25.60 0.18 -26.25 16 8 H 0.07 3.43 7.82 -2.91 -0.02 3.41 16 9 C 0.06 2.66 2.78 -13.03 -0.04 2.63 16 10 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 11 C 0.56 25.80 5.45 87.66 0.48 26.28 16 12 O -0.57 -28.40 13.72 -3.01 -0.04 -28.44 16 13 N -0.53 -22.37 6.16 -173.54 -1.07 -23.44 16 14 N -0.51 -17.87 6.26 -173.53 -1.09 -18.96 16 15 C 0.49 16.34 8.02 87.66 0.70 17.04 16 16 O -0.58 -25.00 16.34 16.03 0.26 -24.74 16 17 C 0.08 1.58 7.53 71.24 0.54 2.12 16 18 O -0.58 -12.66 13.19 -129.94 -1.71 -14.37 16 19 C -0.04 -1.71 4.59 -19.87 -0.09 -1.80 16 20 C -0.09 -4.13 8.39 22.27 0.19 -3.94 16 21 C -0.15 -5.80 10.05 22.27 0.22 -5.58 16 22 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 23 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 24 C -0.12 -4.92 8.21 22.27 0.18 -4.74 16 25 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 26 H 0.43 18.23 7.89 -213.32 -1.68 16.54 16 27 H 0.43 13.46 8.00 -213.33 -1.71 11.75 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.41 3.48 9.12 -74.05 -0.68 2.80 16 31 H 0.11 5.32 6.05 -2.91 -0.02 5.31 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.10 4.43 6.99 -2.91 -0.02 4.41 16 Total: -1.00 -72.84 306.48 -1.14 -73.99 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: -2.90 Total: 40.76 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 3.15 Total: -1.47 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -1.92 Total: -89.12 kcal Atomic # 8 Polarization: -66.05 SS G_CDS: -1.49 Total: -67.55 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -72.84 -1.14 -73.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641424629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.904 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds