Wall clock time and date at job start Mon Mar 30 2020 23:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46923 * 264.79062 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.79075 * 3 2 1 6 6 H 1.48501 * 109.46981 * 144.79701 * 3 2 1 7 7 C 1.37878 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00322 * 353.54769 * 7 2 1 9 9 C 1.50701 * 119.99473 * 173.54286 * 7 2 1 10 10 H 1.09001 * 109.47426 * 34.96467 * 9 7 2 11 11 C 1.50707 * 109.46883 * 154.96224 * 9 7 2 12 12 O 1.21284 * 119.99830 * 119.99581 * 11 9 7 13 13 N 1.34780 * 120.00024 * 300.00245 * 11 9 7 14 14 N 1.40099 * 119.99876 * 180.02562 * 13 11 9 15 15 C 1.34780 * 119.99876 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99780 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99848 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.46912 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47068 * 274.95991 * 9 7 2 20 20 C 1.38240 * 119.99800 * 126.36872 * 19 9 7 21 21 C 1.38238 * 119.99890 * 179.97438 * 20 19 9 22 22 C 1.38233 * 120.00041 * 359.95685 * 21 20 19 23 23 C 1.38238 * 120.00173 * 359.97438 * 22 21 20 24 24 C 1.38229 * 119.99812 * 0.06393 * 23 22 21 25 25 H 0.97007 * 119.99477 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99742 * 359.97438 * 13 11 9 27 27 H 0.97002 * 119.99924 * 359.97438 * 14 13 11 28 28 H 1.09000 * 109.47446 * 299.99851 * 17 15 14 29 29 H 1.09004 * 109.47267 * 59.99590 * 17 15 14 30 30 H 0.96704 * 114.00001 * 179.97438 * 18 17 15 31 31 H 1.08000 * 119.99918 * 359.97438 * 20 19 9 32 32 H 1.07999 * 119.99494 * 179.97438 * 21 20 19 33 33 H 1.08007 * 119.99818 * 179.71686 * 22 21 20 34 34 H 1.07998 * 120.00024 * 179.97438 * 23 22 21 35 35 H 1.08006 * 120.00106 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6067 1.9828 -1.3944 5 1 1.3960 2.6819 0.5870 6 1 3.4874 1.4743 0.8071 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1061 9 6 3.5043 -1.1983 -0.1462 10 1 3.9210 -0.3252 0.3558 11 6 4.0663 -2.4510 0.4753 12 8 4.6983 -3.2333 -0.2025 13 7 3.8665 -2.7019 1.7844 14 7 4.3894 -3.8661 2.3623 15 6 4.1900 -4.1167 3.6715 16 8 3.5583 -3.3341 4.3493 17 6 4.7520 -5.3692 4.2929 18 8 4.4099 -5.4076 5.6798 19 6 3.8660 -1.1573 -1.6085 20 6 4.7265 -0.1838 -2.0806 21 6 5.0588 -0.1465 -3.4220 22 6 4.5312 -1.0831 -4.2910 23 6 3.6718 -2.0575 -3.8187 24 6 3.3389 -2.0943 -2.4776 25 1 -0.4850 0.8401 -0.0004 26 1 3.3612 -2.0760 2.3265 27 1 4.8949 -4.4917 1.8201 28 1 4.3350 -6.2425 3.7912 29 1 5.8368 -5.3726 4.1863 30 1 4.7396 -6.1888 6.1448 31 1 5.1392 0.5475 -1.4015 32 1 5.7307 0.6143 -3.7908 33 1 4.7872 -1.0511 -5.3398 34 1 3.2593 -2.7889 -4.4978 35 1 2.6672 -2.8553 -2.1086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641424630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:35 Heat of formation + Delta-G solvation = -60.143036 kcal Electronic energy + Delta-G solvation = -21214.179008 eV Core-core repulsion = 17792.693663 eV Total energy + Delta-G solvation = -3421.485345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08266 -39.10049 -37.92084 -36.55653 -34.85981 -33.77304 -31.67648 -31.12622 -30.17256 -28.17186 -27.02226 -23.70217 -21.92399 -21.49657 -21.19011 -19.63661 -18.18668 -17.38510 -17.13852 -16.80663 -16.04799 -15.95335 -15.56051 -14.66362 -14.61542 -14.48293 -14.05784 -13.87542 -13.36606 -13.16870 -12.71865 -12.63461 -12.55146 -12.16057 -11.97480 -11.27194 -11.00280 -10.91520 -10.50099 -10.47715 -10.38382 -9.99310 -9.93681 -9.65131 -9.18263 -8.81627 -8.17248 -7.96401 -7.88857 -6.33318 -4.39983 1.94670 2.14494 2.26302 2.50616 3.17011 3.22597 3.26431 3.35280 3.96219 4.20936 4.48018 4.55183 4.81177 4.92806 4.96441 4.98307 5.51198 5.56563 5.66985 5.80098 5.87659 6.21795 6.25359 6.40160 6.66301 6.80353 6.97395 7.03540 7.12731 7.19373 7.21198 7.31875 7.53931 7.75282 7.97784 8.13862 8.19516 8.64850 8.90396 9.23285 10.77375 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.005621 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.041367 B = 4980.288850 C = 6039.128375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.090 3.910 3 Si 0.864 3.136 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.035 3.965 10 H 0.074 0.926 11 C 0.540 3.460 12 O -0.560 6.560 13 N -0.519 5.519 14 N -0.522 5.522 15 C 0.503 3.497 16 O -0.519 6.519 17 C 0.073 3.927 18 O -0.546 6.546 19 C -0.031 4.031 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.130 4.130 24 C -0.069 4.069 25 H 0.270 0.730 26 H 0.438 0.562 27 H 0.427 0.573 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.387 0.613 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 -7.470 1.724 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.116 4.116 3 Si 0.690 3.310 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.102 0.898 9 C 0.012 3.988 10 H 0.092 0.908 11 C 0.329 3.671 12 O -0.437 6.437 13 N -0.269 5.269 14 N -0.270 5.270 15 C 0.288 3.712 16 O -0.393 6.393 17 C -0.010 4.010 18 O -0.351 6.351 19 C -0.032 4.032 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.087 4.087 25 H 0.080 0.920 26 H 0.282 0.718 27 H 0.268 0.732 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.234 0.766 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.453 -6.777 1.618 12.562 hybrid contribution 0.538 0.367 0.007 0.651 sum 10.991 -6.410 1.626 12.827 Atomic orbital electron populations 1.69863 1.06253 1.27700 1.47281 1.24927 0.94713 0.98851 0.93080 0.86996 0.80344 0.83871 0.79772 1.18838 1.20916 1.18697 1.20511 0.86456 0.95693 1.53386 0.89770 1.18422 0.98972 0.91763 0.89615 0.90823 1.21539 0.77782 0.88949 0.78782 1.90613 1.42054 1.49819 1.61174 1.45233 1.56511 1.15299 1.09867 1.44604 1.55630 1.18153 1.08632 1.20458 0.81737 0.88456 0.80591 1.90778 1.39588 1.47978 1.60912 1.21616 0.99718 0.95343 0.84313 1.86590 1.80261 1.48581 1.19659 1.19996 0.93008 0.93854 0.96390 1.20976 0.99007 0.99543 0.95651 1.20881 1.00968 0.99189 0.93679 1.20886 0.99605 0.96624 0.98730 1.21037 0.99037 0.98924 0.95785 1.20856 0.97577 0.97946 0.92319 0.91951 0.71829 0.73185 0.90012 0.90122 0.76559 0.87312 0.87186 0.87259 0.87041 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 13.96 55.43 0.77 -24.16 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.86 19.90 26.63 -169.99 -4.53 15.37 16 4 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.62 6.31 56.52 0.36 -5.27 16 7 C -0.52 -13.32 8.01 -34.44 -0.28 -13.60 16 8 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 9 C 0.04 0.78 1.89 -94.07 -0.18 0.60 16 10 H 0.07 1.60 5.20 -51.93 -0.27 1.33 16 11 C 0.54 11.24 7.15 -10.98 -0.08 11.17 16 12 O -0.56 -12.13 15.27 5.55 0.08 -12.04 16 13 N -0.52 -9.80 6.16 31.22 0.19 -9.61 16 14 N -0.52 -7.98 6.26 31.22 0.20 -7.79 16 15 C 0.50 7.60 8.02 -10.99 -0.09 7.51 16 16 O -0.52 -10.41 16.34 -14.36 -0.23 -10.65 16 17 C 0.07 0.68 7.53 36.00 0.27 0.95 16 18 O -0.55 -5.87 13.19 -55.14 -0.73 -6.60 16 19 C -0.03 -0.68 3.89 -104.62 -0.41 -1.09 16 20 C -0.13 -2.65 9.18 -39.58 -0.36 -3.01 16 21 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 22 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.07 -1.46 8.32 -39.58 -0.33 -1.79 16 25 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.44 8.64 7.89 -182.60 -1.44 7.20 16 27 H 0.43 5.49 8.00 -182.60 -1.46 4.03 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.39 1.70 9.12 45.56 0.42 2.11 16 31 H 0.11 1.98 7.96 -52.49 -0.42 1.57 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 2.60 7.89 -52.48 -0.41 2.19 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -34.44 310.79 -7.60 -42.04 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.30 Total: 13.95 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.74 Total: -5.20 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 1.16 Total: -41.56 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.88 Total: -29.28 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.53 Total: 15.37 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.44 -7.60 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641424630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.103 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds