Wall clock time and date at job start Mon Mar 30 2020 23:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46923 * 264.79062 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.79075 * 3 2 1 6 6 H 1.48501 * 109.46981 * 144.79701 * 3 2 1 7 7 C 1.37878 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00322 * 353.54769 * 7 2 1 9 9 C 1.50701 * 119.99473 * 173.54286 * 7 2 1 10 10 H 1.09001 * 109.47426 * 34.96467 * 9 7 2 11 11 C 1.50707 * 109.46883 * 154.96224 * 9 7 2 12 12 O 1.21284 * 119.99830 * 119.99581 * 11 9 7 13 13 N 1.34780 * 120.00024 * 300.00245 * 11 9 7 14 14 N 1.40099 * 119.99876 * 180.02562 * 13 11 9 15 15 C 1.34780 * 119.99876 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99780 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99848 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.46912 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47068 * 274.95991 * 9 7 2 20 20 C 1.38240 * 119.99800 * 126.36872 * 19 9 7 21 21 C 1.38238 * 119.99890 * 179.97438 * 20 19 9 22 22 C 1.38233 * 120.00041 * 359.95685 * 21 20 19 23 23 C 1.38238 * 120.00173 * 359.97438 * 22 21 20 24 24 C 1.38229 * 119.99812 * 0.06393 * 23 22 21 25 25 H 0.97007 * 119.99477 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99742 * 359.97438 * 13 11 9 27 27 H 0.97002 * 119.99924 * 359.97438 * 14 13 11 28 28 H 1.09000 * 109.47446 * 299.99851 * 17 15 14 29 29 H 1.09004 * 109.47267 * 59.99590 * 17 15 14 30 30 H 0.96704 * 114.00001 * 179.97438 * 18 17 15 31 31 H 1.08000 * 119.99918 * 359.97438 * 20 19 9 32 32 H 1.07999 * 119.99494 * 179.97438 * 21 20 19 33 33 H 1.08007 * 119.99818 * 179.71686 * 22 21 20 34 34 H 1.07998 * 120.00024 * 179.97438 * 23 22 21 35 35 H 1.08006 * 120.00106 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6067 1.9828 -1.3944 5 1 1.3960 2.6819 0.5870 6 1 3.4874 1.4743 0.8071 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1061 9 6 3.5043 -1.1983 -0.1462 10 1 3.9210 -0.3252 0.3558 11 6 4.0663 -2.4510 0.4753 12 8 4.6983 -3.2333 -0.2025 13 7 3.8665 -2.7019 1.7844 14 7 4.3894 -3.8661 2.3623 15 6 4.1900 -4.1167 3.6715 16 8 3.5583 -3.3341 4.3493 17 6 4.7520 -5.3692 4.2929 18 8 4.4099 -5.4076 5.6798 19 6 3.8660 -1.1573 -1.6085 20 6 4.7265 -0.1838 -2.0806 21 6 5.0588 -0.1465 -3.4220 22 6 4.5312 -1.0831 -4.2910 23 6 3.6718 -2.0575 -3.8187 24 6 3.3389 -2.0943 -2.4776 25 1 -0.4850 0.8401 -0.0004 26 1 3.3612 -2.0760 2.3265 27 1 4.8949 -4.4917 1.8201 28 1 4.3350 -6.2425 3.7912 29 1 5.8368 -5.3726 4.1863 30 1 4.7396 -6.1888 6.1448 31 1 5.1392 0.5475 -1.4015 32 1 5.7307 0.6143 -3.7908 33 1 4.7872 -1.0511 -5.3398 34 1 3.2593 -2.7889 -4.4978 35 1 2.6672 -2.8553 -2.1086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641424630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:34 Heat of formation + Delta-G solvation = -87.918707 kcal Electronic energy + Delta-G solvation = -21215.383451 eV Core-core repulsion = 17792.693663 eV Total energy + Delta-G solvation = -3422.689788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51966 -40.51440 -39.37374 -37.43105 -36.29857 -35.60775 -33.48809 -32.52354 -31.62367 -29.59768 -28.22673 -25.55047 -23.39908 -22.95241 -22.50095 -21.13093 -19.24518 -19.15512 -18.74041 -17.98967 -17.49441 -16.99786 -16.94470 -16.36913 -16.02263 -15.89157 -15.44684 -15.36329 -14.91111 -14.57189 -14.43207 -14.12498 -13.79475 -13.51791 -13.41495 -13.04578 -12.73902 -12.41280 -12.06280 -12.02816 -11.66428 -11.47679 -11.26069 -11.15142 -10.93261 -10.75911 -9.63583 -9.42927 -9.39135 -8.38098 -6.47781 0.55218 0.68155 0.90353 1.25148 1.34232 1.37745 1.42890 1.75494 2.28669 2.86763 2.93080 3.14463 3.65780 3.73904 4.06691 4.16521 4.18348 4.28772 4.32185 4.36565 4.40037 4.55421 4.81168 4.90204 5.13872 5.31956 5.35886 5.61195 5.67470 5.72512 5.75489 5.92828 6.14807 6.29895 6.49285 6.55308 6.86590 6.91526 7.18111 7.36758 8.76353 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.005621 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.041367 B = 4980.288850 C = 6039.128375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.038 3.962 3 Si 0.919 3.081 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.511 4.511 8 H 0.041 0.959 9 C 0.036 3.964 10 H 0.081 0.919 11 C 0.541 3.459 12 O -0.570 6.570 13 N -0.524 5.524 14 N -0.514 5.514 15 C 0.497 3.503 16 O -0.576 6.576 17 C 0.082 3.918 18 O -0.580 6.580 19 C -0.058 4.058 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.099 4.099 25 H 0.271 0.729 26 H 0.433 0.567 27 H 0.439 0.561 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.413 0.587 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.885 -7.462 0.647 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.163 4.163 3 Si 0.742 3.258 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.013 3.987 10 H 0.099 0.901 11 C 0.329 3.671 12 O -0.448 6.448 13 N -0.272 5.272 14 N -0.263 5.263 15 C 0.284 3.716 16 O -0.453 6.453 17 C 0.001 3.999 18 O -0.390 6.390 19 C -0.059 4.059 20 C -0.167 4.167 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.118 4.118 25 H 0.080 0.920 26 H 0.275 0.725 27 H 0.283 0.717 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.266 0.734 31 H 0.141 0.859 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.432 -6.829 0.549 15.079 hybrid contribution -0.354 0.217 0.323 0.526 sum 13.079 -6.612 0.872 14.681 Atomic orbital electron populations 1.70001 1.08103 1.28531 1.49894 1.25694 0.95298 1.02394 0.92888 0.86115 0.79991 0.79327 0.80385 1.18134 1.21178 1.15981 1.20481 0.88403 0.93897 1.52111 0.94054 1.18346 0.96478 0.92850 0.91033 0.90146 1.21215 0.77887 0.88624 0.79325 1.90586 1.42736 1.49935 1.61520 1.45100 1.55982 1.16644 1.09438 1.44824 1.55448 1.16943 1.09132 1.21825 0.80386 0.89608 0.79746 1.90751 1.42231 1.50299 1.62046 1.21767 1.01784 0.92606 0.83755 1.86515 1.81135 1.50810 1.20497 1.19962 0.94973 0.95383 0.95560 1.21251 0.98913 0.99241 0.97311 1.21361 1.00578 0.99721 0.92663 1.21372 0.97876 0.95145 1.00735 1.21356 0.99051 0.99928 0.94779 1.20840 0.98587 0.98208 0.94117 0.92011 0.72508 0.71701 0.86458 0.85919 0.73420 0.85939 0.83388 0.83199 0.84711 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 2 C 0.04 2.09 5.47 84.65 0.46 2.56 16 3 Si 0.92 41.06 26.63 68.60 1.83 42.89 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.24 -9.46 6.31 99.48 0.63 -8.83 16 7 C -0.51 -27.28 8.01 25.60 0.21 -27.08 16 8 H 0.04 2.49 8.05 -2.91 -0.02 2.47 16 9 C 0.04 1.61 1.89 -13.03 -0.02 1.59 16 10 H 0.08 3.46 5.20 -2.39 -0.01 3.45 16 11 C 0.54 22.98 7.15 87.66 0.63 23.60 16 12 O -0.57 -24.87 15.27 -3.04 -0.05 -24.91 16 13 N -0.52 -20.30 6.16 -173.52 -1.07 -21.37 16 14 N -0.51 -15.52 6.26 -173.53 -1.09 -16.60 16 15 C 0.50 14.69 8.02 87.65 0.70 15.39 16 16 O -0.58 -23.60 16.34 16.00 0.26 -23.34 16 17 C 0.08 1.30 7.53 71.23 0.54 1.84 16 18 O -0.58 -11.28 13.19 -129.94 -1.71 -12.99 16 19 C -0.06 -2.49 3.89 -19.87 -0.08 -2.57 16 20 C -0.15 -5.57 9.18 22.27 0.20 -5.36 16 21 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 22 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 23 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 24 C -0.10 -4.26 8.32 22.27 0.19 -4.08 16 25 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 26 H 0.43 17.83 7.89 -213.32 -1.68 16.14 16 27 H 0.44 10.78 8.00 -213.32 -1.71 9.08 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.41 2.53 9.12 -74.05 -0.68 1.85 16 31 H 0.12 4.12 7.96 -2.91 -0.02 4.10 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.09 4.29 7.89 -2.91 -0.02 4.27 16 Total: -1.00 -79.25 310.79 -1.02 -80.27 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -2.98 Total: 37.03 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 3.49 Total: -6.06 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -1.86 Total: -92.88 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -1.50 Total: -61.25 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.83 Total: 42.89 kcal Total: -79.25 -1.02 -80.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641424630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.646 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds