Wall clock time and date at job start Tue Mar 31 2020 00:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.66352 * 2 1 4 4 C 1.54704 * 110.74941 * 236.58854 * 2 1 3 5 5 C 1.51667 * 101.94402 * 266.98622 * 4 2 1 6 6 C 1.37697 * 132.08782 * 164.12489 * 5 4 2 7 7 C 1.38994 * 119.91283 * 180.91803 * 6 5 4 8 8 S 1.76209 * 120.19776 * 180.02562 * 7 6 5 9 9 C 1.81402 * 103.00003 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46886 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46809 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00184 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00099 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46856 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46863 * 120.00187 * 15 13 11 18 18 H 1.48492 * 109.47088 * 240.00371 * 15 13 11 19 19 C 1.38942 * 119.60502 * 359.97438 * 7 6 5 20 20 C 1.37865 * 120.25972 * 0.11733 * 19 7 6 21 21 C 1.38880 * 107.04582 * 344.64377 * 5 4 2 22 22 O 1.36273 * 111.20434 * 358.85451 * 21 5 4 23 23 H 1.08999 * 109.46795 * 298.22912 * 1 2 3 24 24 H 1.08997 * 109.47020 * 58.23686 * 1 2 3 25 25 H 1.09007 * 109.46702 * 178.23401 * 1 2 3 26 26 H 1.09000 * 109.46767 * 181.76622 * 3 2 1 27 27 H 1.09004 * 109.47185 * 301.76260 * 3 2 1 28 28 H 1.08995 * 109.47026 * 61.76970 * 3 2 1 29 29 H 1.08995 * 110.93869 * 148.82636 * 4 2 1 30 30 H 1.08998 * 110.93846 * 25.14516 * 4 2 1 31 31 H 1.07996 * 120.03990 * 0.90126 * 6 5 4 32 32 H 1.08999 * 109.47023 * 299.99605 * 9 8 7 33 33 H 1.08998 * 109.46857 * 59.99635 * 9 8 7 34 34 H 1.08999 * 109.47360 * 299.99880 * 10 9 8 35 35 H 1.08998 * 109.47277 * 60.00374 * 10 9 8 36 36 H 0.96995 * 120.00376 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.86682 * 179.83014 * 19 7 6 38 38 H 1.07998 * 119.82318 * 179.70357 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0781 -0.7966 -1.2076 5 6 2.2623 -2.1799 -0.6136 6 6 2.4440 -3.4161 -1.1923 7 6 2.5698 -4.5448 -0.3909 8 16 2.8033 -6.1303 -1.1234 9 6 2.9071 -7.2325 0.3136 10 6 3.1127 -8.6721 -0.1616 11 6 3.1995 -9.5876 1.0322 12 1 3.1159 -9.1832 2.0302 13 6 3.3846 -10.9418 0.8505 14 7 3.4859 -11.4345 -0.3647 15 14 3.4915 -12.0768 2.3304 16 1 3.3485 -11.2809 3.5759 17 1 2.4038 -13.0854 2.2602 18 1 4.8066 -12.7664 2.3313 19 6 2.5116 -4.4153 0.9912 20 6 2.3276 -3.1756 1.5657 21 6 2.2093 -2.0404 0.7671 22 8 2.0394 -0.7365 1.1247 23 1 -0.3633 0.4861 0.9054 24 1 -0.3633 0.5410 -0.8737 25 1 -0.3633 -1.0273 -0.0317 26 1 3.1592 1.4090 -0.0317 27 1 1.6920 1.9625 -0.8738 28 1 1.7433 1.9431 0.9054 29 1 3.0306 -0.3874 -1.5442 30 1 1.3543 -0.8159 -2.0224 31 1 2.4883 -3.5086 -2.2674 32 1 3.7466 -6.9332 0.9411 33 1 1.9830 -7.1683 0.8882 34 1 2.2729 -8.9711 -0.7889 35 1 4.0366 -8.7366 -0.7364 36 1 3.6164 -12.3871 -0.4925 37 1 2.6061 -5.2898 1.6179 38 1 2.2785 -3.0836 2.6406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652130118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:14 Heat of formation + Delta-G solvation = -27.940528 kcal Electronic energy + Delta-G solvation = -18407.402921 eV Core-core repulsion = 15533.607196 eV Total energy + Delta-G solvation = -2873.795725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35193 -37.61631 -33.99989 -33.78731 -31.79050 -30.87836 -30.07674 -27.79611 -26.85989 -25.23658 -22.77305 -21.82254 -21.14564 -20.69007 -17.30515 -17.04757 -16.57113 -16.12479 -15.68263 -14.60675 -14.50386 -14.26967 -14.04134 -13.92735 -13.78202 -13.34328 -12.99263 -12.85858 -12.57616 -12.40870 -12.31845 -12.06778 -11.87283 -11.39739 -11.30215 -11.17881 -11.02841 -10.81187 -10.61221 -10.28912 -9.77972 -9.68761 -9.14419 -8.98569 -8.73175 -8.46515 -6.85389 -6.10451 -4.15194 1.26206 1.35743 2.03988 3.03763 3.11288 3.26390 3.34169 3.37879 3.65583 4.20767 4.29601 4.38820 4.50754 4.73351 4.85693 5.06496 5.17686 5.25581 5.26416 5.30840 5.36566 5.41576 5.45616 5.58971 5.68179 5.74055 5.87157 5.87590 5.99549 6.07120 6.14262 6.36764 6.39065 6.55169 6.64258 7.17865 7.48971 7.56103 7.84932 8.21539 8.89603 9.49221 11.00457 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044997 B = 0.003029 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.107688 B = 9241.944367 C = 9646.351871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 C -0.140 4.140 4 C -0.098 4.098 5 C -0.158 4.158 6 C -0.058 4.058 7 C -0.098 4.098 8 S -0.139 6.139 9 C -0.081 4.081 10 C 0.037 3.963 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.100 4.100 20 C -0.117 4.117 21 C 0.088 3.912 22 O -0.299 6.299 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.137 0.863 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 23.780 -0.754 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.063 3.937 3 C -0.198 4.198 4 C -0.136 4.136 5 C -0.160 4.160 6 C -0.082 4.082 7 C -0.211 4.211 8 S 0.108 5.892 9 C -0.229 4.229 10 C -0.002 4.002 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.125 4.125 20 C -0.137 4.137 21 C 0.041 3.959 22 O -0.214 6.214 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.135 23.309 -1.838 23.744 hybrid contribution -0.037 -0.389 1.956 1.995 sum -4.173 22.919 0.118 23.296 Atomic orbital electron populations 1.22196 0.93550 1.03298 1.02973 1.22703 0.94276 0.92811 0.83933 1.21828 1.01983 0.92838 1.03110 1.21861 1.02489 0.91183 0.98033 1.20573 1.06750 0.94784 0.93918 1.19849 0.99854 0.89127 0.99412 1.21805 1.05030 0.98229 0.96000 1.85618 1.89537 0.96198 1.17837 1.24020 1.03890 0.99436 0.95512 1.18926 0.98426 0.85459 0.97394 1.21102 1.50753 0.91849 0.92409 0.92278 1.25015 0.95000 0.98235 0.95999 1.69973 1.49124 1.13308 1.20475 0.86452 0.77739 0.80670 0.82660 1.19640 1.20863 1.20856 1.21049 1.00451 0.97314 0.93653 1.20133 1.04987 0.89056 0.99553 1.19422 0.99005 0.84742 0.92768 1.86882 1.80330 1.16532 1.37683 0.91392 0.90790 0.91687 0.91437 0.90407 0.91314 0.89144 0.89124 0.85478 0.90549 0.90565 0.95375 0.95374 0.92760 0.84564 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.85 37.16 0.33 -1.01 16 2 C 0.10 0.95 1.26 -89.72 -0.11 0.84 16 3 C -0.14 -0.97 8.96 37.16 0.33 -0.63 16 4 C -0.10 -0.95 6.18 -26.51 -0.16 -1.12 16 5 C -0.16 -2.08 6.26 -104.11 -0.65 -2.73 16 6 C -0.06 -0.84 9.79 -39.50 -0.39 -1.23 16 7 C -0.10 -1.59 6.11 -39.04 -0.24 -1.83 16 8 S -0.14 -2.57 21.93 -107.50 -2.36 -4.93 16 9 C -0.08 -1.65 4.28 37.16 0.16 -1.50 16 10 C 0.04 0.94 4.98 -27.89 -0.14 0.80 16 11 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.10 -1.55 9.35 -39.46 -0.37 -1.92 16 20 C -0.12 -1.66 10.05 -39.33 -0.40 -2.05 16 21 C 0.09 1.23 6.94 -38.95 -0.27 0.96 16 22 O -0.30 -3.87 10.53 -20.61 -0.22 -4.09 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.63 8.12 -51.92 -0.42 0.21 16 26 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 30 H 0.09 0.73 7.92 -51.93 -0.41 0.31 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.08 1.50 7.75 -51.92 -0.40 1.10 16 33 H 0.08 1.50 7.75 -51.92 -0.40 1.10 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.14 2.06 5.88 -52.49 -0.31 1.75 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -30.16 328.66 -9.93 -40.08 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.70 Total: -2.14 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -2.32 Total: -24.48 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.22 Total: -4.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.36 Total: -4.93 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.16 -9.93 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652130118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.142 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds