Wall clock time and date at job start Tue Mar 31 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.66352 * 2 1 4 4 C 1.54704 * 110.74941 * 236.58854 * 2 1 3 5 5 C 1.51667 * 101.94402 * 266.98622 * 4 2 1 6 6 C 1.37697 * 132.08782 * 164.12489 * 5 4 2 7 7 C 1.38994 * 119.91283 * 180.91803 * 6 5 4 8 8 S 1.76209 * 120.19776 * 180.02562 * 7 6 5 9 9 C 1.81402 * 103.00003 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46886 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46809 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00184 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00099 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46856 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46863 * 120.00187 * 15 13 11 18 18 H 1.48492 * 109.47088 * 240.00371 * 15 13 11 19 19 C 1.38942 * 119.60502 * 359.97438 * 7 6 5 20 20 C 1.37865 * 120.25972 * 0.11733 * 19 7 6 21 21 C 1.38880 * 107.04582 * 344.64377 * 5 4 2 22 22 O 1.36273 * 111.20434 * 358.85451 * 21 5 4 23 23 H 1.08999 * 109.46795 * 298.22912 * 1 2 3 24 24 H 1.08997 * 109.47020 * 58.23686 * 1 2 3 25 25 H 1.09007 * 109.46702 * 178.23401 * 1 2 3 26 26 H 1.09000 * 109.46767 * 181.76622 * 3 2 1 27 27 H 1.09004 * 109.47185 * 301.76260 * 3 2 1 28 28 H 1.08995 * 109.47026 * 61.76970 * 3 2 1 29 29 H 1.08995 * 110.93869 * 148.82636 * 4 2 1 30 30 H 1.08998 * 110.93846 * 25.14516 * 4 2 1 31 31 H 1.07996 * 120.03990 * 0.90126 * 6 5 4 32 32 H 1.08999 * 109.47023 * 299.99605 * 9 8 7 33 33 H 1.08998 * 109.46857 * 59.99635 * 9 8 7 34 34 H 1.08999 * 109.47360 * 299.99880 * 10 9 8 35 35 H 1.08998 * 109.47277 * 60.00374 * 10 9 8 36 36 H 0.96995 * 120.00376 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.86682 * 179.83014 * 19 7 6 38 38 H 1.07998 * 119.82318 * 179.70357 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0781 -0.7966 -1.2076 5 6 2.2623 -2.1799 -0.6136 6 6 2.4440 -3.4161 -1.1923 7 6 2.5698 -4.5448 -0.3909 8 16 2.8033 -6.1303 -1.1234 9 6 2.9071 -7.2325 0.3136 10 6 3.1127 -8.6721 -0.1616 11 6 3.1995 -9.5876 1.0322 12 1 3.1159 -9.1832 2.0302 13 6 3.3846 -10.9418 0.8505 14 7 3.4859 -11.4345 -0.3647 15 14 3.4915 -12.0768 2.3304 16 1 3.3485 -11.2809 3.5759 17 1 2.4038 -13.0854 2.2602 18 1 4.8066 -12.7664 2.3313 19 6 2.5116 -4.4153 0.9912 20 6 2.3276 -3.1756 1.5657 21 6 2.2093 -2.0404 0.7671 22 8 2.0394 -0.7365 1.1247 23 1 -0.3633 0.4861 0.9054 24 1 -0.3633 0.5410 -0.8737 25 1 -0.3633 -1.0273 -0.0317 26 1 3.1592 1.4090 -0.0317 27 1 1.6920 1.9625 -0.8738 28 1 1.7433 1.9431 0.9054 29 1 3.0306 -0.3874 -1.5442 30 1 1.3543 -0.8159 -2.0224 31 1 2.4883 -3.5086 -2.2674 32 1 3.7466 -6.9332 0.9411 33 1 1.9830 -7.1683 0.8882 34 1 2.2729 -8.9711 -0.7889 35 1 4.0366 -8.7366 -0.7364 36 1 3.6164 -12.3871 -0.4925 37 1 2.6061 -5.2898 1.6179 38 1 2.2785 -3.0836 2.6406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652130118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:11 Heat of formation + Delta-G solvation = -42.911555 kcal Electronic energy + Delta-G solvation = -18408.052113 eV Core-core repulsion = 15533.607196 eV Total energy + Delta-G solvation = -2874.444917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -42.29584 -38.67406 -35.83596 -34.81159 -33.16731 -32.48223 -31.18186 -28.37668 -27.95325 -27.06005 -24.02267 -23.07719 -22.66925 -21.57970 -18.72687 -18.28475 -18.23696 -17.09704 -16.62636 -16.49364 -15.78902 -15.68567 -15.30764 -15.03341 -14.82509 -14.31349 -14.24971 -13.88019 -13.81115 -13.56465 -13.19839 -13.01918 -12.98906 -12.90370 -12.76905 -12.40131 -12.28376 -12.14724 -11.89052 -11.75713 -11.69241 -11.36531 -11.01068 -10.62624 -10.14591 -9.82730 -8.24728 -8.22454 -6.37800 0.12751 0.23675 0.60071 1.41293 1.41353 1.54604 1.56766 2.19552 2.39795 2.55914 3.09192 3.37746 3.50419 3.82149 3.85842 4.02561 4.11488 4.17348 4.19946 4.28432 4.46676 4.60497 4.66454 4.72346 4.79204 4.79338 4.83977 4.88863 5.00391 5.08319 5.20433 5.23626 5.27129 5.31611 5.35193 5.45129 5.51557 5.71628 6.08804 6.17985 6.76069 7.31787 8.87384 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044997 B = 0.003029 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.107688 B = 9241.944367 C = 9646.351871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.061 4.061 7 C -0.114 4.114 8 S -0.155 6.155 9 C -0.068 4.068 10 C 0.044 3.956 11 C -0.541 4.541 12 H 0.068 0.932 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.971 3.029 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.108 4.108 20 C -0.125 4.125 21 C 0.087 3.913 22 O -0.313 6.313 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.266 0.734 37 H 0.134 0.866 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 26.090 -0.046 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.133 4.133 5 C -0.161 4.161 6 C -0.084 4.084 7 C -0.227 4.227 8 S 0.091 5.909 9 C -0.216 4.216 10 C 0.005 3.995 11 C -0.580 4.580 12 H 0.086 0.914 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.795 3.205 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.132 4.132 20 C -0.145 4.145 21 C 0.039 3.961 22 O -0.228 6.228 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.599 25.653 -1.118 26.086 hybrid contribution 0.071 -0.911 1.701 1.931 sum -4.528 24.742 0.583 25.159 Atomic orbital electron populations 1.22219 0.92635 1.02556 1.04453 1.23095 0.95096 0.93701 0.82599 1.21875 1.01849 0.91168 1.04545 1.22018 1.03926 0.88717 0.98618 1.20934 1.05251 0.95841 0.94055 1.19998 0.99433 0.89052 0.99963 1.21723 1.07453 0.97002 0.96554 1.85517 1.90598 0.97887 1.16946 1.23639 1.04440 0.97196 0.96355 1.18693 0.95870 0.88607 0.96329 1.21545 1.50460 0.92688 0.93330 0.91398 1.25999 0.94426 1.00099 0.99088 1.70105 1.50135 1.13878 1.22917 0.85309 0.77829 0.78321 0.79053 1.18317 1.20323 1.20328 1.21075 1.00877 0.97910 0.93351 1.20298 1.04839 0.88808 1.00562 1.19636 0.97976 0.85298 0.93211 1.86885 1.80372 1.15968 1.39583 0.91113 0.88109 0.93568 0.91690 0.87716 0.91081 0.87706 0.86999 0.84295 0.89916 0.89888 0.98045 0.98073 0.92510 0.84823 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.85 71.98 0.64 -1.56 16 2 C 0.09 1.48 1.26 -10.21 -0.01 1.46 16 3 C -0.14 -1.42 8.96 71.98 0.65 -0.78 16 4 C -0.10 -1.56 6.18 30.74 0.19 -1.37 16 5 C -0.16 -3.88 6.26 -19.53 -0.12 -4.01 16 6 C -0.06 -1.69 9.79 22.32 0.22 -1.48 16 7 C -0.11 -3.72 6.11 22.62 0.14 -3.58 16 8 S -0.15 -5.86 21.93 -56.49 -1.24 -7.10 16 9 C -0.07 -2.87 4.28 71.98 0.31 -2.57 16 10 C 0.04 2.31 4.98 29.85 0.15 2.46 16 11 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 15 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 C -0.11 -3.32 9.35 22.35 0.21 -3.12 16 20 C -0.12 -3.44 10.05 22.43 0.23 -3.21 16 21 C 0.09 2.30 6.94 22.68 0.16 2.45 16 22 O -0.31 -7.49 10.53 -96.67 -1.02 -8.51 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 26 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.44 7.91 -2.39 -0.02 1.42 16 30 H 0.11 1.37 7.92 -2.39 -0.02 1.35 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.08 3.32 7.75 -2.39 -0.02 3.30 16 33 H 0.08 3.32 7.75 -2.39 -0.02 3.31 16 34 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.13 4.07 5.88 -2.91 -0.02 4.05 16 38 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -66.00 328.66 4.53 -61.47 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.03 Total: 9.27 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 3.44 Total: -44.73 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.05 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.02 Total: -8.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.24 Total: -7.10 kcal Total: -66.00 4.53 -61.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652130118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.560 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds