Wall clock time and date at job start Tue Mar 31 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00495 * 2 1 4 4 H 1.48494 * 109.47165 * 270.00031 * 3 2 1 5 5 H 1.48509 * 109.46672 * 30.00048 * 3 2 1 6 6 H 1.48498 * 109.47173 * 149.99585 * 3 2 1 7 7 C 1.37885 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99534 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00182 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46977 * 300.00069 * 9 7 2 11 11 O 1.42903 * 109.47135 * 59.99875 * 9 7 2 12 12 C 1.52998 * 109.47299 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47162 * 180.65953 * 12 9 7 14 14 C 1.46838 * 111.00173 * 293.88102 * 13 12 9 15 15 C 1.53040 * 109.52469 * 174.16167 * 14 13 12 16 16 C 1.53122 * 109.27714 * 59.17854 * 15 14 13 17 17 C 1.53116 * 109.15917 * 302.34637 * 16 15 14 18 18 H 1.08994 * 109.50723 * 297.67709 * 17 16 15 19 19 S 1.81401 * 109.49941 * 177.59326 * 17 16 15 20 20 N 1.65601 * 104.44909 * 60.00676 * 19 17 16 21 21 O 1.42102 * 110.54020 * 171.62444 * 19 17 16 22 22 O 1.42101 * 110.54703 * 308.37786 * 19 17 16 23 23 C 1.46849 * 110.99524 * 169.67184 * 13 12 9 24 24 H 0.97000 * 119.99616 * 0.02562 * 1 2 3 25 25 H 0.96703 * 114.00137 * 60.00056 * 11 9 7 26 26 H 1.08997 * 109.47107 * 300.66668 * 12 9 7 27 27 H 1.09001 * 109.46649 * 60.66225 * 12 9 7 28 28 H 1.09004 * 109.46928 * 294.17678 * 14 13 12 29 29 H 1.09000 * 109.46358 * 54.15745 * 14 13 12 30 30 H 1.08994 * 109.50616 * 179.12270 * 15 14 13 31 31 H 1.09004 * 109.50354 * 299.24160 * 15 14 13 32 32 H 1.08993 * 109.52124 * 62.25412 * 16 15 14 33 33 H 1.08998 * 109.51913 * 182.44133 * 16 15 14 34 34 H 0.97003 * 120.00310 * 359.97438 * 20 19 17 35 35 H 0.96998 * 120.00535 * 180.02562 * 20 19 17 36 36 H 1.09004 * 109.46513 * 305.85640 * 23 13 12 37 37 H 1.08999 * 109.46528 * 65.82879 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6622 0.0005 13 7 1.5106 -4.9343 -0.0154 14 6 0.7559 -5.1218 1.2301 15 6 -0.1080 -6.3803 1.1201 16 6 0.7929 -7.5908 0.8600 17 6 1.6033 -7.3490 -0.4163 18 1 0.9259 -7.2518 -1.2647 19 16 2.7259 -8.7466 -0.6946 20 7 1.7252 -10.0583 -0.8374 21 8 3.3481 -8.6404 -1.9678 22 8 3.4891 -9.0135 0.4739 23 6 2.4177 -6.0625 -0.2617 24 1 -0.4849 0.8401 -0.0004 25 1 0.9223 -2.5300 -1.9976 26 1 2.8796 -3.5978 -0.8834 27 1 2.8639 -3.6111 0.8964 28 1 1.4506 -5.2300 2.0631 29 1 0.1161 -4.2561 1.4010 30 1 -0.6562 -6.5278 2.0506 31 1 -0.8125 -6.2672 0.2960 32 1 1.4714 -7.7274 1.7020 33 1 0.1782 -8.4826 0.7379 34 1 0.7645 -9.9457 -0.7644 35 1 2.0997 -10.9394 -0.9933 36 1 2.9850 -5.8800 -1.1744 37 1 3.1047 -6.1663 0.5781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653043754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:30 Heat of formation + Delta-G solvation = -158.094946 kcal Electronic energy + Delta-G solvation = -20639.698399 eV Core-core repulsion = 17349.409492 eV Total energy + Delta-G solvation = -3290.288907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17771 -38.11682 -37.53398 -37.01769 -34.63327 -34.20020 -33.82837 -32.16810 -30.07980 -27.00729 -24.98565 -24.27627 -22.26207 -21.01850 -20.28287 -19.16320 -18.54598 -18.25667 -16.90859 -16.75054 -16.66744 -16.44009 -16.24183 -16.10343 -15.50063 -15.03383 -14.68686 -14.55757 -14.23447 -13.73806 -13.22504 -13.17576 -13.16132 -13.07870 -12.99935 -12.83828 -12.75911 -12.45604 -12.25549 -12.04967 -11.80842 -11.53654 -11.30709 -11.24527 -10.88815 -10.68460 -10.10137 -9.21089 -8.13984 -6.39641 -0.77922 1.40474 1.40931 1.51484 1.94325 2.37645 2.58739 3.02594 3.12861 3.19629 3.39592 3.74286 3.97133 4.09609 4.18004 4.29093 4.32586 4.42307 4.52105 4.62549 4.70437 4.77210 4.84608 5.00011 5.01482 5.11333 5.31652 5.38755 5.60389 5.74231 5.97292 6.16167 6.19760 6.40545 6.73371 7.34752 7.62138 8.90370 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037039 B = 0.004046 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.772639 B = 6918.886715 C = 7236.988589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.591 4.591 8 H 0.057 0.943 9 C 0.240 3.760 10 H 0.024 0.976 11 O -0.568 6.568 12 C 0.040 3.960 13 N -0.523 5.523 14 C 0.044 3.956 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.562 4.562 18 H 0.166 0.834 19 S 2.639 3.361 20 N -1.232 6.232 21 O -1.004 7.004 22 O -0.997 6.997 23 C 0.058 3.942 24 H 0.261 0.739 25 H 0.352 0.648 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.428 0.572 35 H 0.427 0.573 36 H 0.088 0.912 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -19.711 0.461 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.630 4.630 8 H 0.075 0.925 9 C 0.182 3.818 10 H 0.042 0.958 11 O -0.371 6.371 12 C -0.088 4.088 13 N -0.247 5.247 14 C -0.084 4.084 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.673 4.673 18 H 0.184 0.816 19 S 2.732 3.268 20 N -0.912 5.912 21 O -0.993 6.993 22 O -0.986 6.986 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.196 0.804 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.259 0.741 36 H 0.106 0.894 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.285 -19.522 0.492 19.530 hybrid contribution 0.621 1.326 0.313 1.497 sum 0.906 -18.196 0.806 18.236 Atomic orbital electron populations 1.70212 1.07576 1.27347 1.48334 1.25851 0.95458 1.02747 0.93332 0.85583 0.78693 0.78967 0.78459 1.19802 1.20831 1.19102 1.22068 0.93529 0.92935 1.54432 0.92453 1.19147 0.87722 0.89678 0.85255 0.95784 1.86494 1.38554 1.96417 1.15659 1.22793 0.96288 0.89710 0.99995 1.61856 1.26187 1.00711 1.35970 1.22231 0.96930 0.99661 0.89565 1.21495 0.97329 0.91825 1.03449 1.21569 0.98762 1.00654 0.93559 1.30279 1.14358 1.12603 1.10050 0.81597 1.03822 0.74173 0.75540 0.73241 1.52663 1.21549 1.24139 1.92849 1.93567 1.74994 1.86632 1.44092 1.93555 1.69314 1.83705 1.52044 1.21869 0.93596 0.89743 1.01990 0.92970 0.80355 0.90982 0.95526 0.95176 0.92471 0.88970 0.90761 0.90201 0.86245 0.74172 0.74149 0.89377 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.35 12.84 21.45 0.28 -53.07 16 2 C 0.03 1.60 5.40 84.66 0.46 2.06 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.59 -32.36 8.76 25.60 0.22 -32.13 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.24 12.13 2.70 29.85 0.08 12.22 16 10 H 0.02 1.37 6.47 -2.39 -0.02 1.35 16 11 O -0.57 -29.46 12.58 -148.98 -1.87 -31.33 16 12 C 0.04 1.63 4.56 86.30 0.39 2.03 16 13 N -0.52 -17.76 4.51 -896.36 -4.04 -21.80 16 14 C 0.04 1.39 5.29 86.33 0.46 1.85 16 15 C -0.10 -2.21 6.09 30.65 0.19 -2.02 16 16 C -0.11 -1.71 5.13 30.67 0.16 -1.55 16 17 C -0.56 -10.60 2.93 30.65 0.09 -10.51 16 18 H 0.17 2.60 8.14 -2.39 -0.02 2.59 16 19 S 2.64 50.71 5.41 -56.49 -0.31 50.40 16 20 N -1.23 -11.97 9.31 37.02 0.34 -11.63 16 21 O -1.00 -27.52 18.10 -127.65 -2.31 -29.83 16 22 O -1.00 -26.06 17.93 -127.65 -2.29 -28.35 16 23 C 0.06 1.57 4.75 86.33 0.41 1.98 16 24 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.35 16.42 9.04 -74.06 -0.67 15.75 16 26 H 0.07 2.81 7.98 -2.39 -0.02 2.79 16 27 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 2.18 6.24 -2.39 -0.01 2.17 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 33 H 0.12 0.84 7.30 -2.39 -0.02 0.82 16 34 H 0.43 1.43 7.99 -96.74 -0.77 0.66 16 35 H 0.43 3.21 8.96 -96.74 -0.87 2.34 16 36 H 0.09 2.35 8.01 -2.39 -0.02 2.33 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.07 312.08 -6.92 -84.99 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -1.20 Total: 21.49 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 2.46 Total: -26.09 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -3.42 Total: -86.50 kcal Atomic # 8 Polarization: -83.04 SS G_CDS: -6.47 Total: -89.52 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.31 Total: 50.40 kcal Total: -78.07 -6.92 -84.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653043754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.102 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds