Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99818 * 3 2 1 5 5 H 1.48501 * 109.46968 * 29.99390 * 3 2 1 6 6 H 1.48495 * 109.47068 * 149.99776 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.47279 * 300.00295 * 9 7 2 11 11 O 1.42903 * 109.47236 * 59.99606 * 9 7 2 12 12 C 1.52999 * 109.47515 * 179.97438 * 9 7 2 13 13 N 1.46893 * 109.47582 * 179.73224 * 12 9 7 14 14 C 1.46841 * 111.00317 * 169.82281 * 13 12 9 15 15 C 1.53171 * 109.55916 * 185.84351 * 14 13 12 16 16 C 1.53122 * 109.20680 * 300.85939 * 15 14 13 17 17 C 1.53124 * 109.21307 * 57.62679 * 16 15 14 18 18 H 1.08996 * 109.50215 * 62.25371 * 17 16 15 19 19 S 1.81395 * 109.50433 * 182.37302 * 17 16 15 20 20 N 1.65595 * 104.44997 * 304.99662 * 19 17 16 21 21 O 1.42099 * 110.54395 * 56.62547 * 19 17 16 22 22 O 1.42105 * 110.54164 * 193.37300 * 19 17 16 23 23 C 1.46845 * 111.00115 * 294.03875 * 13 12 9 24 24 H 0.96999 * 119.99904 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99541 * 59.99925 * 11 9 7 26 26 H 1.09009 * 109.46855 * 59.73696 * 12 9 7 27 27 H 1.08995 * 109.46924 * 299.74126 * 12 9 7 28 28 H 1.09002 * 109.46332 * 305.86079 * 14 13 12 29 29 H 1.09006 * 109.46301 * 65.82639 * 14 13 12 30 30 H 1.09002 * 109.59133 * 180.91163 * 15 14 13 31 31 H 1.08996 * 109.49283 * 60.74907 * 15 14 13 32 32 H 1.08994 * 109.52426 * 297.68963 * 16 15 14 33 33 H 1.09002 * 109.52531 * 177.56011 * 16 15 14 34 34 H 0.97005 * 120.00130 * 0.02562 * 20 19 17 35 35 H 0.97000 * 120.00348 * 179.97438 * 20 19 17 36 36 H 1.08996 * 109.46700 * 54.14025 * 23 13 12 37 37 H 1.09004 * 109.46517 * 294.17266 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9874 -0.5201 1.1679 12 6 4.0215 -2.6366 0.0023 13 7 5.4905 -2.6366 -0.0036 14 6 6.0177 -3.9854 0.2395 15 6 7.5425 -3.9238 0.3715 16 6 8.1367 -3.3463 -0.9161 17 6 7.5350 -1.9617 -1.1720 18 1 7.8015 -1.2923 -0.3541 19 16 8.1808 -1.2997 -2.7326 20 7 9.8263 -1.3584 -2.5568 21 8 7.9106 -2.1940 -3.8033 22 8 7.8895 0.0866 -2.8446 23 6 6.0117 -2.0810 -1.2590 24 1 -0.4850 0.8400 -0.0004 25 1 3.7017 -0.9234 1.9990 26 1 3.6547 -3.1524 -0.8852 27 1 3.6617 -3.1484 0.8947 28 1 5.5895 -4.3823 1.1600 29 1 5.7516 -4.6351 -0.5943 30 1 7.9359 -4.9270 0.5359 31 1 7.8091 -3.2853 1.2136 32 1 7.9032 -4.0051 -1.7525 33 1 9.2182 -3.2598 -0.8115 34 1 10.2146 -1.7001 -1.7362 35 1 10.4021 -1.0517 -3.2747 36 1 5.5793 -1.0947 -1.4269 37 1 5.7457 -2.7396 -2.0858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653043758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = -118.525064 kcal Electronic energy + Delta-G solvation = -20964.304253 eV Core-core repulsion = 17675.731225 eV Total energy + Delta-G solvation = -3288.573028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.10347 -37.06979 -36.11673 -35.97593 -33.70973 -32.96523 -32.22837 -31.23869 -28.61211 -25.55553 -23.78116 -23.11675 -20.39612 -20.09418 -19.43393 -18.02865 -17.43191 -17.22786 -15.95612 -15.74749 -15.29814 -15.13230 -14.83337 -14.69900 -14.17405 -13.66005 -13.59141 -13.26393 -12.88241 -12.61980 -12.21992 -12.14933 -12.01809 -11.99612 -11.59149 -11.37257 -11.30415 -10.98104 -10.86120 -10.82135 -10.61990 -10.39915 -10.18013 -9.85519 -9.03341 -8.61583 -8.28941 -7.94384 -6.13001 -4.24996 0.12443 2.72520 3.42608 3.49992 3.52278 3.78911 4.03456 4.12032 4.32541 4.55555 4.61378 4.78962 4.91968 5.18674 5.22132 5.27694 5.46625 5.51650 5.55756 5.65079 5.69899 5.80185 5.85626 5.92802 6.01921 6.07138 6.24358 6.53841 6.81256 7.13838 7.26840 7.42806 7.63732 8.28509 8.82681 9.09241 9.51860 10.97422 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.005866 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.513190 B = 4772.050924 C = 5579.180089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.214 1.214 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.198 3.802 10 H 0.052 0.948 11 O -0.570 6.570 12 C 0.038 3.962 13 N -0.519 5.519 14 C 0.049 3.951 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.573 4.573 18 H 0.150 0.850 19 S 2.611 3.389 20 N -1.251 6.251 21 O -0.963 6.963 22 O -0.960 6.960 23 C 0.069 3.931 24 H 0.265 0.735 25 H 0.354 0.646 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.096 0.904 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.667 -7.547 -0.421 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.136 1.136 7 C -0.605 4.605 8 H 0.090 0.910 9 C 0.140 3.860 10 H 0.070 0.930 11 O -0.375 6.375 12 C -0.089 4.089 13 N -0.244 5.244 14 C -0.079 4.079 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.684 4.684 18 H 0.168 0.832 19 S 2.703 3.297 20 N -0.925 5.925 21 O -0.952 6.952 22 O -0.948 6.948 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.200 0.800 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.247 0.753 36 H 0.114 0.886 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.262 -6.416 -1.310 21.294 hybrid contribution 0.122 -0.311 0.328 0.469 sum 20.384 -6.727 -0.982 21.487 Atomic orbital electron populations 1.69953 1.06796 1.27532 1.48659 1.24969 0.94599 0.99976 0.92371 0.87086 0.83211 0.81782 0.78655 1.21243 1.22172 1.13649 1.21477 0.89750 0.94851 1.54470 0.91024 1.19755 0.93292 0.86803 0.86105 0.92993 1.86671 1.77869 1.56909 1.16023 1.22911 0.83660 1.01455 1.00910 1.61898 1.09542 1.20849 1.32075 1.22169 0.94799 0.90051 1.00924 1.21529 0.95273 1.00850 0.96951 1.21439 0.99348 0.92764 1.00904 1.30385 1.07382 1.08668 1.21924 0.83170 1.04942 0.73401 0.75017 0.76350 1.53174 1.27438 1.83500 1.28349 1.93591 1.83617 1.67014 1.50987 1.93631 1.83202 1.32403 1.85612 1.21766 0.88751 1.02592 0.92951 0.92539 0.79987 0.94538 0.90614 0.90385 0.95026 0.91082 0.90573 0.90135 0.90808 0.76258 0.75284 0.88592 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 22.11 26.99 -169.99 -4.59 17.52 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.21 -5.33 5.30 56.52 0.30 -5.03 16 7 C -0.57 -15.61 9.34 -34.44 -0.32 -15.93 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.20 4.56 2.20 -27.88 -0.06 4.50 16 10 H 0.05 1.25 5.85 -51.92 -0.30 0.94 16 11 O -0.57 -12.79 10.01 -35.23 -0.35 -13.15 16 12 C 0.04 0.71 4.56 -3.83 -0.02 0.69 16 13 N -0.52 -8.21 4.53 -234.59 -1.06 -9.27 16 14 C 0.05 0.61 5.46 -3.77 -0.02 0.58 16 15 C -0.11 -1.00 6.11 -26.58 -0.16 -1.16 16 16 C -0.11 -0.92 5.11 -26.60 -0.14 -1.06 16 17 C -0.57 -6.41 2.97 -26.64 -0.08 -6.49 16 18 H 0.15 1.52 8.14 -51.93 -0.42 1.10 16 19 S 2.61 31.13 5.42 -107.50 -0.58 30.55 16 20 N -1.25 -8.94 9.27 60.35 0.56 -8.38 16 21 O -0.96 -14.40 18.10 -57.54 -1.04 -15.44 16 22 O -0.96 -15.65 18.10 -57.54 -1.04 -16.69 16 23 C 0.07 1.06 4.58 -3.83 -0.02 1.04 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.35 7.08 9.04 45.56 0.41 7.49 16 26 H 0.04 0.70 8.12 -51.92 -0.42 0.27 16 27 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 28 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.38 6.96 -51.93 -0.36 0.02 16 34 H 0.41 1.68 7.63 -34.47 -0.26 1.41 16 35 H 0.42 2.49 8.96 -34.47 -0.31 2.18 16 36 H 0.10 1.65 6.21 -51.93 -0.32 1.33 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -36.95 305.62 -8.24 -45.18 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.59 Total: 7.04 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.91 Total: -15.46 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.27 Total: -44.16 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -2.44 Total: -45.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.52 kcal Atomic # 16 Polarization: 31.13 SS G_CDS: -0.58 Total: 30.55 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.95 -8.24 -45.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653043758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.342 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds