Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99818 * 3 2 1 5 5 H 1.48501 * 109.46968 * 29.99390 * 3 2 1 6 6 H 1.48495 * 109.47068 * 149.99776 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.47279 * 300.00295 * 9 7 2 11 11 O 1.42903 * 109.47236 * 59.99606 * 9 7 2 12 12 C 1.52999 * 109.47515 * 179.97438 * 9 7 2 13 13 N 1.46893 * 109.47582 * 179.73224 * 12 9 7 14 14 C 1.46841 * 111.00317 * 169.82281 * 13 12 9 15 15 C 1.53171 * 109.55916 * 185.84351 * 14 13 12 16 16 C 1.53122 * 109.20680 * 300.85939 * 15 14 13 17 17 C 1.53124 * 109.21307 * 57.62679 * 16 15 14 18 18 H 1.08996 * 109.50215 * 62.25371 * 17 16 15 19 19 S 1.81395 * 109.50433 * 182.37302 * 17 16 15 20 20 N 1.65595 * 104.44997 * 304.99662 * 19 17 16 21 21 O 1.42099 * 110.54395 * 56.62547 * 19 17 16 22 22 O 1.42105 * 110.54164 * 193.37300 * 19 17 16 23 23 C 1.46845 * 111.00115 * 294.03875 * 13 12 9 24 24 H 0.96999 * 119.99904 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99541 * 59.99925 * 11 9 7 26 26 H 1.09009 * 109.46855 * 59.73696 * 12 9 7 27 27 H 1.08995 * 109.46924 * 299.74126 * 12 9 7 28 28 H 1.09002 * 109.46332 * 305.86079 * 14 13 12 29 29 H 1.09006 * 109.46301 * 65.82639 * 14 13 12 30 30 H 1.09002 * 109.59133 * 180.91163 * 15 14 13 31 31 H 1.08996 * 109.49283 * 60.74907 * 15 14 13 32 32 H 1.08994 * 109.52426 * 297.68963 * 16 15 14 33 33 H 1.09002 * 109.52531 * 177.56011 * 16 15 14 34 34 H 0.97005 * 120.00130 * 0.02562 * 20 19 17 35 35 H 0.97000 * 120.00348 * 179.97438 * 20 19 17 36 36 H 1.08996 * 109.46700 * 54.14025 * 23 13 12 37 37 H 1.09004 * 109.46517 * 294.17266 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9874 -0.5201 1.1679 12 6 4.0215 -2.6366 0.0023 13 7 5.4905 -2.6366 -0.0036 14 6 6.0177 -3.9854 0.2395 15 6 7.5425 -3.9238 0.3715 16 6 8.1367 -3.3463 -0.9161 17 6 7.5350 -1.9617 -1.1720 18 1 7.8015 -1.2923 -0.3541 19 16 8.1808 -1.2997 -2.7326 20 7 9.8263 -1.3584 -2.5568 21 8 7.9106 -2.1940 -3.8033 22 8 7.8895 0.0866 -2.8446 23 6 6.0117 -2.0810 -1.2590 24 1 -0.4850 0.8400 -0.0004 25 1 3.7017 -0.9234 1.9990 26 1 3.6547 -3.1524 -0.8852 27 1 3.6617 -3.1484 0.8947 28 1 5.5895 -4.3823 1.1600 29 1 5.7516 -4.6351 -0.5943 30 1 7.9359 -4.9270 0.5359 31 1 7.8091 -3.2853 1.2136 32 1 7.9032 -4.0051 -1.7525 33 1 9.2182 -3.2598 -0.8115 34 1 10.2146 -1.7001 -1.7362 35 1 10.4021 -1.0517 -3.2747 36 1 5.5793 -1.0947 -1.4269 37 1 5.7457 -2.7396 -2.0858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653043758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = -153.434336 kcal Electronic energy + Delta-G solvation = -20965.818033 eV Core-core repulsion = 17675.731225 eV Total energy + Delta-G solvation = -3290.086808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23691 -38.16926 -37.76231 -37.05357 -34.71281 -34.41263 -33.86591 -32.19217 -30.34213 -27.16043 -24.85054 -24.40423 -21.99565 -21.11660 -20.34310 -19.50243 -18.63487 -18.30135 -16.98633 -16.92802 -16.67369 -16.51870 -16.27508 -16.23722 -15.47603 -15.04974 -14.83332 -14.69244 -14.27853 -13.88034 -13.46332 -13.26619 -13.19376 -13.11792 -13.02129 -12.94602 -12.72722 -12.52825 -12.28138 -11.99887 -11.76316 -11.48872 -11.30555 -11.17261 -10.99605 -10.82418 -10.13267 -9.25825 -8.37984 -6.52033 -0.81954 1.37534 1.43201 1.73109 1.90442 2.41539 2.54581 2.96012 3.01349 3.19546 3.35015 3.70519 3.95079 4.07304 4.08791 4.14883 4.29186 4.40697 4.43665 4.65499 4.68668 4.73844 4.84125 4.95149 5.00146 5.09168 5.30031 5.40225 5.42265 5.45564 6.00106 6.07559 6.17599 6.38824 6.60673 7.21796 7.37699 8.76119 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.005866 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.513190 B = 4772.050924 C = 5579.180089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.033 3.967 3 Si 0.927 3.073 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.040 0.960 9 C 0.204 3.796 10 H 0.043 0.957 11 O -0.571 6.571 12 C 0.049 3.951 13 N -0.520 5.520 14 C 0.040 3.960 15 C -0.102 4.102 16 C -0.110 4.110 17 C -0.557 4.557 18 H 0.167 0.833 19 S 2.624 3.376 20 N -1.229 6.229 21 O -0.998 6.998 22 O -1.010 7.010 23 C 0.056 3.944 24 H 0.267 0.733 25 H 0.367 0.633 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.429 0.571 35 H 0.427 0.573 36 H 0.068 0.932 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.068 -8.262 0.637 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.167 4.167 3 Si 0.751 3.249 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.123 1.123 7 C -0.605 4.605 8 H 0.058 0.942 9 C 0.146 3.854 10 H 0.060 0.940 11 O -0.377 6.377 12 C -0.079 4.079 13 N -0.245 5.245 14 C -0.087 4.087 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.669 4.669 18 H 0.184 0.816 19 S 2.718 3.282 20 N -0.909 5.909 21 O -0.987 6.987 22 O -0.999 6.999 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.214 0.786 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.260 0.740 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.702 -7.147 -0.250 24.757 hybrid contribution -0.936 -0.202 0.028 0.958 sum 22.766 -7.348 -0.222 23.923 Atomic orbital electron populations 1.70067 1.08356 1.28373 1.50886 1.25766 0.95190 1.03312 0.92436 0.86162 0.82381 0.77991 0.78322 1.21724 1.22012 1.12333 1.21842 0.92348 0.93393 1.52874 0.94164 1.19534 0.90356 0.89471 0.86045 0.93961 1.86594 1.77500 1.57225 1.16395 1.22568 0.86285 0.98304 1.00744 1.61857 1.07148 1.23292 1.32206 1.22387 0.97388 0.87883 1.01084 1.21550 0.92420 1.02824 0.97219 1.21643 1.01991 0.90587 1.00641 1.30232 1.04333 1.10987 1.21340 0.81559 1.04194 0.74312 0.73612 0.76110 1.52625 1.25389 1.83241 1.29627 1.93551 1.84691 1.67381 1.53075 1.93576 1.84531 1.35262 1.86500 1.21817 0.91689 1.01071 0.92823 0.92415 0.78564 0.95584 0.90066 0.89855 0.95116 0.88080 0.90090 0.90291 0.86194 0.74040 0.74154 0.91322 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 2 C 0.03 1.93 5.47 84.65 0.46 2.40 16 3 Si 0.93 46.24 26.99 68.60 1.85 48.09 16 4 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.20 -9.57 5.30 99.48 0.53 -9.04 16 7 C -0.57 -31.84 9.34 25.60 0.24 -31.60 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C 0.20 9.40 2.20 29.85 0.07 9.46 16 10 H 0.04 2.06 5.85 -2.38 -0.01 2.04 16 11 O -0.57 -24.87 10.01 -148.98 -1.49 -26.36 16 12 C 0.05 1.84 4.56 86.30 0.39 2.23 16 13 N -0.52 -15.68 4.53 -896.10 -4.06 -19.74 16 14 C 0.04 0.89 5.46 86.37 0.47 1.36 16 15 C -0.10 -1.44 6.11 30.69 0.19 -1.26 16 16 C -0.11 -1.44 5.11 30.68 0.16 -1.29 16 17 C -0.56 -11.07 2.97 30.65 0.09 -10.98 16 18 H 0.17 2.81 8.14 -2.39 -0.02 2.79 16 19 S 2.62 58.88 5.42 -56.49 -0.31 58.57 16 20 N -1.23 -13.71 9.27 37.02 0.34 -13.37 16 21 O -1.00 -29.05 18.10 -127.65 -2.31 -31.36 16 22 O -1.01 -32.68 18.10 -127.65 -2.31 -34.99 16 23 C 0.06 1.66 4.58 86.33 0.40 2.06 16 24 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.37 14.09 9.04 -74.06 -0.67 13.42 16 26 H 0.03 1.01 8.12 -2.38 -0.02 0.99 16 27 H 0.08 2.92 7.98 -2.39 -0.02 2.90 16 28 H 0.08 1.76 8.01 -2.39 -0.02 1.74 16 29 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 0.51 6.96 -2.39 -0.02 0.49 16 34 H 0.43 1.57 7.63 -96.74 -0.74 0.83 16 35 H 0.43 3.87 8.96 -96.75 -0.87 3.00 16 36 H 0.07 2.39 6.21 -2.39 -0.01 2.38 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -81.91 305.62 -6.86 -88.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -1.35 Total: 16.44 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.46 Total: -27.61 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.41 Total: -91.57 kcal Atomic # 8 Polarization: -86.59 SS G_CDS: -6.11 Total: -92.71 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.85 Total: 48.09 kcal Atomic # 16 Polarization: 58.88 SS G_CDS: -0.31 Total: 58.57 kcal Total: -81.91 -6.86 -88.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653043758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.658 kcal (2) G-P(sol) polarization free energy of solvation -81.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds