Wall clock time and date at job start Tue Mar 31 2020 00:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47338 * 239.99661 * 3 2 1 5 5 H 1.48498 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46676 * 299.99773 * 9 7 2 11 11 O 1.42899 * 109.47104 * 59.99904 * 9 7 2 12 12 C 1.52997 * 109.47038 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47341 * 177.72718 * 12 9 7 14 14 C 1.47903 * 111.00393 * 294.28319 * 13 12 9 15 15 C 1.53988 * 107.22687 * 214.25203 * 14 13 12 16 16 C 1.54588 * 105.14091 * 1.12356 * 15 14 13 17 17 H 1.09001 * 110.72403 * 263.59729 * 16 15 14 18 18 C 1.53010 * 110.72399 * 140.49300 * 16 15 14 19 19 S 1.81402 * 109.46933 * 66.45519 * 18 16 15 20 20 N 1.65594 * 104.44635 * 179.97438 * 19 18 16 21 21 O 1.42102 * 110.54213 * 291.62173 * 19 18 16 22 22 O 1.42097 * 110.54132 * 68.37643 * 19 18 16 23 23 C 1.48806 * 111.18896 * 176.94225 * 13 12 9 24 24 H 0.96997 * 119.99838 * 0.02562 * 1 2 3 25 25 H 0.96694 * 113.99979 * 60.00156 * 11 9 7 26 26 H 1.09005 * 109.47012 * 57.72807 * 12 9 7 27 27 H 1.09004 * 109.47153 * 297.73043 * 12 9 7 28 28 H 1.08998 * 109.91837 * 94.79678 * 14 13 12 29 29 H 1.09004 * 109.91199 * 333.70335 * 14 13 12 30 30 H 1.09007 * 110.30605 * 120.04031 * 15 14 13 31 31 H 1.09005 * 110.30889 * 242.10370 * 15 14 13 32 32 H 1.09003 * 109.46736 * 186.45350 * 18 16 15 33 33 H 1.09000 * 109.46974 * 306.45491 * 18 16 15 34 34 H 0.97000 * 120.00713 * 0.02562 * 20 19 18 35 35 H 0.97005 * 120.00218 * 179.97438 * 20 19 18 36 36 H 1.09005 * 110.52036 * 41.07800 * 23 13 12 37 37 H 1.08997 * 110.84345 * 278.09301 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6242 -2.5574 0.8881 11 8 0.4300 -2.5741 -1.1688 12 6 2.2454 -3.6620 -0.0015 13 7 1.5118 -4.9335 0.0523 14 6 0.7923 -5.0766 1.3366 15 6 0.8105 -6.5715 1.7056 16 6 1.6057 -7.2576 0.5713 17 1 0.9304 -7.6680 -0.1796 18 6 2.5162 -8.3514 1.1333 19 16 1.5015 -9.6928 1.8126 20 7 2.5996 -10.7953 2.3791 21 8 0.8110 -9.2560 2.9753 22 8 0.8213 -10.3799 0.7713 23 6 2.4406 -6.0939 -0.0196 24 1 -0.4850 0.8400 -0.0004 25 1 0.9224 -2.5282 -1.9997 26 1 2.8979 -3.5820 0.8680 27 1 2.8457 -3.6270 -0.9106 28 1 -0.2365 -4.7339 1.2261 29 1 1.2955 -4.4969 2.1106 30 1 1.3121 -6.7190 2.6621 31 1 -0.2058 -6.9632 1.7477 32 1 3.1490 -8.7422 0.3364 33 1 3.1417 -7.9336 1.9222 34 1 3.5500 -10.6207 2.2946 35 1 2.2925 -11.6154 2.7962 36 1 3.3282 -5.9109 0.5861 37 1 2.7181 -6.3051 -1.0523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656343832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:24 Heat of formation + Delta-G solvation = -121.800435 kcal Electronic energy + Delta-G solvation = -20171.956009 eV Core-core repulsion = 16883.240950 eV Total energy + Delta-G solvation = -3288.715059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.98543 -37.18801 -36.11629 -35.72576 -33.51403 -33.14280 -32.06883 -29.75124 -28.29001 -26.26657 -24.15741 -21.66575 -20.76515 -19.85908 -19.46049 -17.84586 -17.55307 -16.97225 -16.48269 -15.77690 -15.39928 -15.02177 -14.62286 -14.32213 -13.98889 -13.69621 -13.25692 -13.04356 -12.41633 -12.36581 -12.30423 -12.19045 -12.13721 -11.99964 -11.53688 -11.03920 -11.03585 -10.92108 -10.83301 -10.76466 -10.69713 -10.57634 -10.34680 -10.05226 -8.99986 -8.56992 -8.10812 -7.80245 -6.00296 -4.19381 -0.01956 2.60747 3.27991 3.33757 3.34754 3.38102 3.98068 4.07785 4.37194 4.47739 4.63375 4.74386 4.98164 5.17830 5.22728 5.27194 5.45662 5.61999 5.62694 5.84779 5.87800 5.96587 6.06169 6.20533 6.25689 6.47993 6.53433 6.66849 6.78028 7.33006 7.52670 7.74690 7.86088 8.19489 8.84321 9.46323 9.62658 11.03775 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.050667 B = 0.003328 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.495832 B = 8410.308130 C = 8459.506425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.237 3.763 10 H 0.055 0.945 11 O -0.554 6.554 12 C 0.022 3.978 13 N -0.505 5.505 14 C 0.042 3.958 15 C -0.146 4.146 16 C -0.083 4.083 17 H 0.100 0.900 18 C -0.609 4.609 19 S 2.612 3.388 20 N -1.255 6.255 21 O -0.957 6.957 22 O -0.964 6.964 23 C 0.047 3.953 24 H 0.261 0.739 25 H 0.343 0.657 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.042 0.958 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -19.601 3.802 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.106 4.106 13 N -0.229 5.229 14 C -0.086 4.086 15 C -0.184 4.184 16 C -0.104 4.104 17 H 0.118 0.882 18 C -0.739 4.739 19 S 2.704 3.296 20 N -0.928 5.928 21 O -0.946 6.946 22 O -0.953 6.953 23 C -0.082 4.082 24 H 0.071 0.929 25 H 0.186 0.814 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.237 0.763 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.948 -19.478 3.808 20.719 hybrid contribution 2.690 1.035 0.383 2.907 sum 8.638 -18.443 4.191 20.792 Atomic orbital electron populations 1.70070 1.05912 1.26554 1.46743 1.25025 0.94690 0.99072 0.93841 0.86730 0.79708 0.83228 0.78627 1.20150 1.21162 1.20240 1.21615 0.93058 0.91665 1.55210 0.92834 1.19304 0.87778 0.88420 0.86582 0.92758 1.86566 1.37763 1.96283 1.14984 1.23274 0.97401 0.90164 0.99725 1.64892 1.23940 1.01850 1.32216 1.22787 1.01147 0.93828 0.90862 1.22834 1.01207 0.96851 0.97555 1.21819 0.96206 0.93785 0.98569 0.88174 1.30404 1.14322 1.16276 1.12938 1.04844 0.74367 0.75331 0.75080 1.53221 1.21452 1.37724 1.80384 1.93626 1.70581 1.82164 1.48251 1.93614 1.71196 1.71218 1.59270 1.23245 0.94259 0.90150 1.00587 0.92892 0.81438 0.95281 0.91727 0.89666 0.93475 0.90452 0.90189 0.84508 0.84660 0.76344 0.75229 0.93938 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 12.84 55.43 0.71 -24.74 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.58 -15.77 8.76 -34.44 -0.30 -16.08 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.24 6.00 2.79 -27.88 -0.08 5.92 16 10 H 0.05 1.51 7.30 -51.93 -0.38 1.13 16 11 O -0.55 -14.55 12.64 -35.23 -0.45 -14.99 16 12 C 0.02 0.45 4.34 -3.83 -0.02 0.44 16 13 N -0.51 -9.03 5.21 -230.22 -1.20 -10.23 16 14 C 0.04 0.71 5.54 -2.76 -0.02 0.70 16 15 C -0.15 -1.96 5.32 -25.38 -0.13 -2.10 16 16 C -0.08 -0.97 3.08 -88.76 -0.27 -1.24 16 17 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.61 -4.45 5.48 37.16 0.20 -4.24 16 19 S 2.61 23.17 5.76 -107.50 -0.62 22.55 16 20 N -1.26 -6.31 9.43 60.35 0.57 -5.74 16 21 O -0.96 -12.02 16.91 -57.54 -0.97 -12.99 16 22 O -0.96 -12.33 18.10 -57.54 -1.04 -13.37 16 23 C 0.05 0.63 6.03 -1.74 -0.01 0.62 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.34 8.05 9.04 45.56 0.41 8.46 16 26 H 0.03 0.58 7.94 -51.93 -0.41 0.17 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.05 0.82 7.64 -51.93 -0.40 0.42 16 30 H 0.08 0.93 7.52 -51.93 -0.39 0.54 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.14 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.14 0.74 8.07 -51.92 -0.42 0.32 16 34 H 0.41 0.81 8.83 -34.47 -0.30 0.51 16 35 H 0.42 1.79 8.96 -34.47 -0.31 1.48 16 36 H 0.04 0.53 7.93 -51.93 -0.41 0.12 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -36.92 316.61 -8.66 -45.57 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.69 Total: 6.94 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.72 Total: -13.83 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.08 Total: -40.70 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -2.46 Total: -41.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 23.17 SS G_CDS: -0.62 Total: 22.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.92 -8.66 -45.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656343832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.226 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds