Wall clock time and date at job start Tue Mar 31 2020 00:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47338 * 239.99661 * 3 2 1 5 5 H 1.48498 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46676 * 299.99773 * 9 7 2 11 11 O 1.42899 * 109.47104 * 59.99904 * 9 7 2 12 12 C 1.52997 * 109.47038 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47341 * 177.72718 * 12 9 7 14 14 C 1.47903 * 111.00393 * 294.28319 * 13 12 9 15 15 C 1.53988 * 107.22687 * 214.25203 * 14 13 12 16 16 C 1.54588 * 105.14091 * 1.12356 * 15 14 13 17 17 H 1.09001 * 110.72403 * 263.59729 * 16 15 14 18 18 C 1.53010 * 110.72399 * 140.49300 * 16 15 14 19 19 S 1.81402 * 109.46933 * 66.45519 * 18 16 15 20 20 N 1.65594 * 104.44635 * 179.97438 * 19 18 16 21 21 O 1.42102 * 110.54213 * 291.62173 * 19 18 16 22 22 O 1.42097 * 110.54132 * 68.37643 * 19 18 16 23 23 C 1.48806 * 111.18896 * 176.94225 * 13 12 9 24 24 H 0.96997 * 119.99838 * 0.02562 * 1 2 3 25 25 H 0.96694 * 113.99979 * 60.00156 * 11 9 7 26 26 H 1.09005 * 109.47012 * 57.72807 * 12 9 7 27 27 H 1.09004 * 109.47153 * 297.73043 * 12 9 7 28 28 H 1.08998 * 109.91837 * 94.79678 * 14 13 12 29 29 H 1.09004 * 109.91199 * 333.70335 * 14 13 12 30 30 H 1.09007 * 110.30605 * 120.04031 * 15 14 13 31 31 H 1.09005 * 110.30889 * 242.10370 * 15 14 13 32 32 H 1.09003 * 109.46736 * 186.45350 * 18 16 15 33 33 H 1.09000 * 109.46974 * 306.45491 * 18 16 15 34 34 H 0.97000 * 120.00713 * 0.02562 * 20 19 18 35 35 H 0.97005 * 120.00218 * 179.97438 * 20 19 18 36 36 H 1.09005 * 110.52036 * 41.07800 * 23 13 12 37 37 H 1.08997 * 110.84345 * 278.09301 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6242 -2.5574 0.8881 11 8 0.4300 -2.5741 -1.1688 12 6 2.2454 -3.6620 -0.0015 13 7 1.5118 -4.9335 0.0523 14 6 0.7923 -5.0766 1.3366 15 6 0.8105 -6.5715 1.7056 16 6 1.6057 -7.2576 0.5713 17 1 0.9304 -7.6680 -0.1796 18 6 2.5162 -8.3514 1.1333 19 16 1.5015 -9.6928 1.8126 20 7 2.5996 -10.7953 2.3791 21 8 0.8110 -9.2560 2.9753 22 8 0.8213 -10.3799 0.7713 23 6 2.4406 -6.0939 -0.0196 24 1 -0.4850 0.8400 -0.0004 25 1 0.9224 -2.5282 -1.9997 26 1 2.8979 -3.5820 0.8680 27 1 2.8457 -3.6270 -0.9106 28 1 -0.2365 -4.7339 1.2261 29 1 1.2955 -4.4969 2.1106 30 1 1.3121 -6.7190 2.6621 31 1 -0.2058 -6.9632 1.7477 32 1 3.1490 -8.7422 0.3364 33 1 3.1417 -7.9336 1.9222 34 1 3.5500 -10.6207 2.2946 35 1 2.2925 -11.6154 2.7962 36 1 3.3282 -5.9109 0.5861 37 1 2.7181 -6.3051 -1.0523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656343832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:23 Heat of formation + Delta-G solvation = -156.653488 kcal Electronic energy + Delta-G solvation = -20173.467351 eV Core-core repulsion = 16883.240950 eV Total energy + Delta-G solvation = -3290.226401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23071 -38.01261 -37.58190 -36.91902 -34.46249 -34.17100 -33.99278 -31.00630 -29.88707 -27.63953 -25.75392 -23.29882 -21.85606 -21.16441 -20.28232 -19.05373 -18.46491 -18.18321 -17.37405 -16.70990 -16.61920 -16.48916 -16.18739 -16.07584 -15.45940 -15.09554 -14.56692 -14.27790 -13.73639 -13.49172 -13.45598 -13.13044 -13.09583 -13.02537 -12.98201 -12.77605 -12.72428 -12.53493 -12.18250 -12.03590 -11.96945 -11.66085 -11.39536 -11.23022 -10.99295 -10.69489 -10.08369 -9.22887 -8.12919 -6.39822 -0.69777 1.40764 1.42691 1.50955 2.02268 2.38507 2.70975 3.05236 3.13463 3.39013 3.49810 3.58501 3.71448 4.11458 4.21065 4.31080 4.33638 4.45099 4.53843 4.59659 4.67649 4.75578 4.86877 5.01026 5.02549 5.09424 5.18669 5.32096 5.59157 5.74863 5.96795 6.09128 6.20438 6.41048 6.74233 7.34954 7.63016 8.91465 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.050667 B = 0.003328 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.495832 B = 8410.308130 C = 8459.506425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.590 4.590 8 H 0.062 0.938 9 C 0.235 3.765 10 H 0.016 0.984 11 O -0.573 6.573 12 C 0.041 3.959 13 N -0.526 5.526 14 C 0.040 3.960 15 C -0.144 4.144 16 C -0.083 4.083 17 H 0.097 0.903 18 C -0.592 4.592 19 S 2.623 3.377 20 N -1.239 6.239 21 O -1.000 7.000 22 O -1.008 7.008 23 C 0.046 3.954 24 H 0.261 0.739 25 H 0.353 0.647 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.428 0.572 35 H 0.424 0.576 36 H 0.061 0.939 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -20.566 3.673 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.628 4.628 8 H 0.080 0.920 9 C 0.177 3.823 10 H 0.034 0.966 11 O -0.376 6.376 12 C -0.087 4.087 13 N -0.250 5.250 14 C -0.088 4.088 15 C -0.183 4.183 16 C -0.104 4.104 17 H 0.115 0.885 18 C -0.724 4.724 19 S 2.718 3.282 20 N -0.917 5.917 21 O -0.989 6.989 22 O -0.998 6.998 23 C -0.082 4.082 24 H 0.070 0.930 25 H 0.197 0.803 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.257 0.743 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.911 -20.484 3.687 22.640 hybrid contribution 1.780 1.300 0.416 2.243 sum 10.691 -19.184 4.103 22.341 Atomic orbital electron populations 1.70229 1.07806 1.27426 1.48338 1.25945 0.95474 1.03081 0.93373 0.85579 0.78301 0.78288 0.79185 1.18990 1.21201 1.19250 1.22049 0.93609 0.92757 1.54400 0.91999 1.19187 0.87854 0.90318 0.84952 0.96579 1.86510 1.38822 1.96470 1.15794 1.22844 0.95858 0.89740 1.00267 1.64751 1.25311 1.02278 1.32641 1.22715 0.99207 0.96370 0.90551 1.22829 1.01946 0.94251 0.99231 1.21777 0.96486 0.94375 0.97730 0.88459 1.30249 1.13548 1.13663 1.14929 1.04132 0.74530 0.75608 0.73947 1.52776 1.21969 1.37101 1.79839 1.93582 1.72554 1.82981 1.49797 1.93568 1.73182 1.72574 1.60430 1.23371 0.94134 0.88561 1.02153 0.93028 0.80284 0.94999 0.90713 0.92877 0.94413 0.88758 0.90589 0.80649 0.81751 0.74261 0.74524 0.92067 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.78 12.84 21.45 0.28 -54.51 16 2 C 0.02 1.33 5.40 84.65 0.46 1.79 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.59 -32.38 8.76 25.60 0.22 -32.16 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.23 12.16 2.79 29.85 0.08 12.24 16 10 H 0.02 0.96 7.30 -2.39 -0.02 0.94 16 11 O -0.57 -30.86 12.64 -148.98 -1.88 -32.74 16 12 C 0.04 1.65 4.34 86.30 0.37 2.03 16 13 N -0.53 -18.50 5.21 -882.27 -4.60 -23.10 16 14 C 0.04 1.39 5.54 86.44 0.48 1.87 16 15 C -0.14 -3.77 5.32 31.47 0.17 -3.60 16 16 C -0.08 -1.72 3.08 -9.59 -0.03 -1.75 16 17 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 18 C -0.59 -6.22 5.48 71.99 0.39 -5.82 16 19 S 2.62 41.29 5.76 -56.49 -0.33 40.97 16 20 N -1.24 -8.94 9.43 37.02 0.35 -8.59 16 21 O -1.00 -24.12 16.91 -127.65 -2.16 -26.27 16 22 O -1.01 -24.74 18.10 -127.65 -2.31 -27.05 16 23 C 0.05 1.11 6.03 86.60 0.52 1.64 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.35 16.84 9.04 -74.06 -0.67 16.17 16 26 H 0.03 1.24 7.94 -2.38 -0.02 1.23 16 27 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.35 7.64 -2.38 -0.02 1.33 16 30 H 0.09 2.12 7.52 -2.38 -0.02 2.11 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.16 0.90 8.07 -2.39 -0.02 0.88 16 34 H 0.43 0.03 8.83 -96.74 -0.85 -0.82 16 35 H 0.42 2.66 8.96 -96.74 -0.87 1.79 16 36 H 0.06 1.28 7.93 -2.38 -0.02 1.26 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -82.16 316.61 -7.24 -89.40 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -1.29 Total: 20.41 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 2.67 Total: -23.77 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.97 Total: -86.19 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -6.35 Total: -86.06 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 41.29 SS G_CDS: -0.33 Total: 40.97 kcal Total: -82.16 -7.24 -89.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656343832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.252 kcal (2) G-P(sol) polarization free energy of solvation -82.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds