Wall clock time and date at job start Tue Mar 31 2020 00:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 11 11 O 1.42898 * 109.47531 * 60.00372 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47248 * 180.02562 * 12 9 7 14 14 C 1.47436 * 110.99968 * 69.87063 * 13 12 9 15 15 C 1.54319 * 107.23339 * 123.25908 * 14 13 12 16 16 C 1.55141 * 103.01615 * 22.28314 * 15 14 13 17 17 H 1.09003 * 110.99134 * 82.44063 * 16 15 14 18 18 C 1.53001 * 110.98738 * 206.21773 * 16 15 14 19 19 S 1.81408 * 109.47446 * 293.54501 * 18 16 15 20 20 N 1.65597 * 104.45194 * 180.02562 * 19 18 16 21 21 O 1.42099 * 110.54023 * 291.63197 * 19 18 16 22 22 O 1.42101 * 110.53758 * 68.37756 * 19 18 16 23 23 C 1.47849 * 110.99958 * 190.71566 * 13 12 9 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 0.96695 * 114.00198 * 59.99174 * 11 9 7 26 26 H 1.09004 * 109.46930 * 299.99899 * 12 9 7 27 27 H 1.09000 * 109.47312 * 59.99955 * 12 9 7 28 28 H 1.08999 * 109.88948 * 242.66224 * 14 13 12 29 29 H 1.09003 * 109.88788 * 3.69335 * 14 13 12 30 30 H 1.08995 * 110.70854 * 140.66464 * 15 14 13 31 31 H 1.09001 * 110.70655 * 263.72415 * 15 14 13 32 32 H 1.08998 * 109.47626 * 53.54623 * 18 16 15 33 33 H 1.09001 * 109.46940 * 173.54735 * 18 16 15 34 34 H 0.97001 * 119.99662 * 0.02562 * 20 19 18 35 35 H 0.96990 * 120.00198 * 179.97438 * 20 19 18 36 36 H 1.09001 * 110.37228 * 332.46451 * 23 13 12 37 37 H 1.08999 * 110.37172 * 94.80388 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6205 -2.5547 0.8933 11 8 0.4342 -2.5777 -1.1642 12 6 2.2450 -3.6621 0.0134 13 7 1.5104 -4.9343 0.0128 14 6 0.8423 -5.1581 -1.2823 15 6 1.3470 -6.5098 -1.8296 16 6 1.8373 -7.2425 -0.5530 17 1 1.0058 -7.7159 -0.0308 18 6 2.9224 -8.2667 -0.8916 19 16 2.2054 -9.5988 -1.8928 20 7 3.4723 -10.6248 -2.1837 21 8 1.2993 -10.3723 -1.1182 22 8 1.8426 -9.1157 -3.1790 23 6 2.4187 -6.0707 0.2766 24 1 -0.4851 -0.8400 -0.0004 25 1 0.9298 -2.5344 -1.9934 26 1 2.8757 -3.6068 -0.8739 27 1 2.8676 -3.6021 0.9061 28 1 -0.2378 -5.1954 -1.1409 29 1 1.0981 -4.3561 -1.9749 30 1 0.5347 -7.0616 -2.3027 31 1 2.1683 -6.3595 -2.5304 32 1 3.7197 -7.7794 -1.4527 33 1 3.3289 -8.6834 0.0299 34 1 4.3517 -10.4225 -1.8278 35 1 3.3348 -11.4283 -2.7093 36 1 3.4291 -5.8342 -0.0569 37 1 2.4169 -6.3195 1.3378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656343833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:26 Heat of formation + Delta-G solvation = -126.030020 kcal Electronic energy + Delta-G solvation = -20341.272728 eV Core-core repulsion = 17052.374261 eV Total energy + Delta-G solvation = -3288.898468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16702 -37.22655 -36.20511 -36.07546 -33.54802 -33.14639 -32.11677 -29.94562 -28.12789 -26.23443 -23.86256 -21.51613 -20.79689 -20.32972 -19.64945 -17.93865 -17.58307 -17.27142 -16.50459 -15.90003 -15.40195 -15.19859 -14.80527 -14.25174 -13.79385 -13.70817 -13.27408 -13.01879 -12.75626 -12.40763 -12.34457 -12.19254 -12.16984 -12.02621 -11.72277 -11.53790 -11.11828 -10.89237 -10.79544 -10.77314 -10.60284 -10.37875 -10.13588 -10.07023 -9.15507 -8.47050 -8.02597 -7.84146 -6.35412 -4.19434 -0.05869 2.56941 3.33957 3.40487 3.43800 3.59690 3.93578 4.03298 4.38750 4.48493 4.58090 4.73368 4.90950 5.11022 5.17993 5.33523 5.43798 5.57110 5.59545 5.74549 5.82898 5.93995 5.96976 6.09689 6.16700 6.38037 6.51092 6.63875 6.69235 7.33125 7.45002 7.63044 8.02249 8.34815 8.85831 9.09692 9.66770 11.04867 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051427 B = 0.003419 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.335229 B = 8186.531436 C = 8301.641787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.035 3.965 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.652 4.652 8 H 0.047 0.953 9 C 0.219 3.781 10 H 0.057 0.943 11 O -0.576 6.576 12 C 0.034 3.966 13 N -0.527 5.527 14 C 0.055 3.945 15 C -0.160 4.160 16 C -0.091 4.091 17 H 0.100 0.900 18 C -0.608 4.608 19 S 2.612 3.388 20 N -1.255 6.255 21 O -0.964 6.964 22 O -0.957 6.957 23 C 0.056 3.944 24 H 0.286 0.714 25 H 0.348 0.652 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.045 0.955 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -19.626 -3.125 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.174 4.174 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.216 1.216 7 C -0.691 4.691 8 H 0.066 0.934 9 C 0.161 3.839 10 H 0.074 0.926 11 O -0.380 6.380 12 C -0.094 4.094 13 N -0.251 5.251 14 C -0.073 4.073 15 C -0.199 4.199 16 C -0.111 4.111 17 H 0.119 0.881 18 C -0.738 4.738 19 S 2.704 3.296 20 N -0.928 5.928 21 O -0.953 6.953 22 O -0.946 6.946 23 C -0.073 4.073 24 H 0.098 0.902 25 H 0.193 0.807 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.237 0.763 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.359 -17.998 -2.548 19.611 hybrid contribution 2.468 -1.674 -0.680 3.058 sum 9.827 -19.672 -3.228 22.226 Atomic orbital electron populations 1.70593 1.06907 1.32452 1.42618 1.25770 0.96510 1.02399 0.92736 0.83566 0.74683 0.75264 0.76717 1.21471 1.20921 1.21596 1.22443 0.94300 0.92601 1.59719 0.93421 1.19534 0.88617 0.90195 0.85507 0.92552 1.86569 1.39476 1.96116 1.15872 1.23032 0.96816 0.89825 0.99688 1.63613 1.28360 1.01784 1.31307 1.22877 1.00100 0.94338 0.89969 1.23279 1.02038 0.98432 0.96114 1.22064 0.95740 0.94764 0.98555 0.88139 1.30352 1.11094 1.16523 1.15821 1.04833 0.73709 0.75405 0.75638 1.53206 1.26913 1.41096 1.71540 1.93614 1.61351 1.67633 1.72736 1.93627 1.81093 1.81257 1.38625 1.23028 0.95067 0.89528 0.99679 0.90219 0.80679 0.95622 0.91412 0.90334 0.90994 0.90085 0.90668 0.84668 0.84502 0.76323 0.75203 0.93675 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.53 55.43 0.75 -26.40 16 2 C 0.04 1.00 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.65 -17.95 8.76 -34.44 -0.30 -18.25 16 8 H 0.05 1.29 7.74 -52.49 -0.41 0.89 16 9 C 0.22 5.45 2.68 -27.88 -0.07 5.37 16 10 H 0.06 1.57 8.00 -51.93 -0.42 1.15 16 11 O -0.58 -14.00 9.64 -35.23 -0.34 -14.34 16 12 C 0.03 0.69 4.40 -3.82 -0.02 0.68 16 13 N -0.53 -9.32 5.16 -231.25 -1.19 -10.51 16 14 C 0.05 0.91 5.52 -2.84 -0.02 0.89 16 15 C -0.16 -2.12 5.27 -24.91 -0.13 -2.26 16 16 C -0.09 -1.04 3.06 -88.48 -0.27 -1.31 16 17 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.61 -4.46 5.58 37.16 0.21 -4.25 16 19 S 2.61 23.11 5.76 -107.50 -0.62 22.49 16 20 N -1.25 -6.32 9.43 60.35 0.57 -5.75 16 21 O -0.96 -12.26 18.10 -57.54 -1.04 -13.30 16 22 O -0.96 -12.01 16.89 -57.54 -0.97 -12.99 16 23 C 0.06 0.76 6.15 -2.30 -0.01 0.75 16 24 H 0.29 8.88 6.47 -40.82 -0.26 8.61 16 25 H 0.35 7.66 7.92 45.56 0.36 8.02 16 26 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 27 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.26 5.19 -51.93 -0.27 0.99 16 30 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 31 H 0.07 0.93 8.02 -51.93 -0.42 0.52 16 32 H 0.14 0.75 8.11 -51.92 -0.42 0.33 16 33 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.41 0.82 8.83 -34.46 -0.30 0.52 16 35 H 0.42 1.79 8.96 -34.47 -0.31 1.48 16 36 H 0.04 0.57 7.71 -51.93 -0.40 0.17 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -36.72 309.91 -8.54 -45.26 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.57 Total: 8.57 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.71 Total: -17.47 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.13 Total: -42.66 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -2.35 Total: -40.63 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Atomic # 16 Polarization: 23.11 SS G_CDS: -0.62 Total: 22.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.72 -8.54 -45.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656343833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.768 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds