Wall clock time and date at job start Tue Mar 31 2020 00:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 11 11 O 1.42898 * 109.47531 * 60.00372 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47248 * 180.02562 * 12 9 7 14 14 C 1.47436 * 110.99968 * 69.87063 * 13 12 9 15 15 C 1.54319 * 107.23339 * 123.25908 * 14 13 12 16 16 C 1.55141 * 103.01615 * 22.28314 * 15 14 13 17 17 H 1.09003 * 110.99134 * 82.44063 * 16 15 14 18 18 C 1.53001 * 110.98738 * 206.21773 * 16 15 14 19 19 S 1.81408 * 109.47446 * 293.54501 * 18 16 15 20 20 N 1.65597 * 104.45194 * 180.02562 * 19 18 16 21 21 O 1.42099 * 110.54023 * 291.63197 * 19 18 16 22 22 O 1.42101 * 110.53758 * 68.37756 * 19 18 16 23 23 C 1.47849 * 110.99958 * 190.71566 * 13 12 9 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 0.96695 * 114.00198 * 59.99174 * 11 9 7 26 26 H 1.09004 * 109.46930 * 299.99899 * 12 9 7 27 27 H 1.09000 * 109.47312 * 59.99955 * 12 9 7 28 28 H 1.08999 * 109.88948 * 242.66224 * 14 13 12 29 29 H 1.09003 * 109.88788 * 3.69335 * 14 13 12 30 30 H 1.08995 * 110.70854 * 140.66464 * 15 14 13 31 31 H 1.09001 * 110.70655 * 263.72415 * 15 14 13 32 32 H 1.08998 * 109.47626 * 53.54623 * 18 16 15 33 33 H 1.09001 * 109.46940 * 173.54735 * 18 16 15 34 34 H 0.97001 * 119.99662 * 0.02562 * 20 19 18 35 35 H 0.96990 * 120.00198 * 179.97438 * 20 19 18 36 36 H 1.09001 * 110.37228 * 332.46451 * 23 13 12 37 37 H 1.08999 * 110.37172 * 94.80388 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6205 -2.5547 0.8933 11 8 0.4342 -2.5777 -1.1642 12 6 2.2450 -3.6621 0.0134 13 7 1.5104 -4.9343 0.0128 14 6 0.8423 -5.1581 -1.2823 15 6 1.3470 -6.5098 -1.8296 16 6 1.8373 -7.2425 -0.5530 17 1 1.0058 -7.7159 -0.0308 18 6 2.9224 -8.2667 -0.8916 19 16 2.2054 -9.5988 -1.8928 20 7 3.4723 -10.6248 -2.1837 21 8 1.2993 -10.3723 -1.1182 22 8 1.8426 -9.1157 -3.1790 23 6 2.4187 -6.0707 0.2766 24 1 -0.4851 -0.8400 -0.0004 25 1 0.9298 -2.5344 -1.9934 26 1 2.8757 -3.6068 -0.8739 27 1 2.8676 -3.6021 0.9061 28 1 -0.2378 -5.1954 -1.1409 29 1 1.0981 -4.3561 -1.9749 30 1 0.5347 -7.0616 -2.3027 31 1 2.1683 -6.3595 -2.5304 32 1 3.7197 -7.7794 -1.4527 33 1 3.3289 -8.6834 0.0299 34 1 4.3517 -10.4225 -1.8278 35 1 3.3348 -11.4283 -2.7093 36 1 3.4291 -5.8342 -0.0569 37 1 2.4169 -6.3195 1.3378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656343833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:26 Heat of formation + Delta-G solvation = -160.029373 kcal Electronic energy + Delta-G solvation = -20342.747051 eV Core-core repulsion = 17052.374261 eV Total energy + Delta-G solvation = -3290.372790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44584 -38.05722 -37.91056 -36.95768 -34.49923 -34.15443 -34.02641 -31.21666 -29.65003 -27.51626 -25.63551 -23.23929 -21.88219 -21.65003 -20.34131 -19.36283 -18.57456 -18.22563 -17.40815 -16.95408 -16.75877 -16.41035 -16.11016 -15.71084 -15.66481 -14.97293 -14.68536 -14.24117 -14.06502 -13.81107 -13.45136 -13.27150 -13.16209 -13.11612 -13.01938 -12.71220 -12.59679 -12.32402 -12.14313 -11.97915 -11.90665 -11.66148 -11.43470 -11.26223 -11.08765 -10.63098 -10.01374 -9.21825 -8.60549 -6.45990 -0.73546 1.53562 1.62208 1.79558 1.98584 2.55897 2.67238 2.99348 3.18009 3.33394 3.45390 3.57245 3.65493 3.96438 4.10162 4.23096 4.29568 4.32036 4.45372 4.52239 4.60217 4.74598 4.87023 4.91883 5.00652 5.07864 5.22355 5.29039 5.47537 5.78162 6.08025 6.13675 6.22962 6.37920 6.56824 7.17169 7.51203 8.77002 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051427 B = 0.003419 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.335229 B = 8186.531436 C = 8301.641787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.659 4.659 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.017 0.983 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.547 5.547 14 C 0.053 3.947 15 C -0.157 4.157 16 C -0.089 4.089 17 H 0.098 0.902 18 C -0.591 4.591 19 S 2.625 3.375 20 N -1.239 6.239 21 O -1.008 7.008 22 O -0.999 6.999 23 C 0.054 3.946 24 H 0.268 0.732 25 H 0.358 0.642 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.428 0.572 35 H 0.424 0.576 36 H 0.063 0.937 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.385 -20.563 -3.169 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.697 4.697 8 H 0.071 0.929 9 C 0.160 3.840 10 H 0.034 0.966 11 O -0.388 6.388 12 C -0.075 4.075 13 N -0.271 5.271 14 C -0.075 4.075 15 C -0.195 4.195 16 C -0.110 4.110 17 H 0.116 0.884 18 C -0.723 4.723 19 S 2.719 3.281 20 N -0.917 5.917 21 O -0.997 6.997 22 O -0.988 6.988 23 C -0.075 4.075 24 H 0.078 0.922 25 H 0.204 0.796 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.192 0.808 34 H 0.257 0.743 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.268 -18.989 -2.608 21.744 hybrid contribution 1.578 -1.440 -0.645 2.231 sum 11.846 -20.429 -3.253 23.838 Atomic orbital electron populations 1.70743 1.08123 1.31298 1.45608 1.27324 0.96476 1.06560 0.91703 0.82923 0.74167 0.71136 0.77673 1.19870 1.21226 1.19346 1.22850 0.94708 0.93795 1.58377 0.92926 1.19366 0.88580 0.91736 0.84311 0.96551 1.86522 1.39819 1.96245 1.16252 1.22619 0.95328 0.89565 1.00016 1.63471 1.29534 1.02148 1.31976 1.22769 0.98989 0.96120 0.89605 1.23240 1.02532 0.96551 0.97208 1.22012 0.97017 0.95015 0.96956 0.88379 1.30206 1.10162 1.14416 1.17548 1.04100 0.73789 0.75526 0.74686 1.52768 1.26896 1.40581 1.71441 1.93569 1.63724 1.69079 1.73372 1.93583 1.82365 1.82039 1.40839 1.23143 0.95101 0.88411 1.00828 0.92188 0.79587 0.94933 0.91191 0.92521 0.92255 0.90129 0.89322 0.81848 0.80775 0.74263 0.74489 0.91893 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.49 13.53 21.45 0.29 -57.20 16 2 C -0.02 -1.06 5.40 84.66 0.46 -0.61 16 3 Si 1.12 49.46 29.90 68.60 2.05 51.52 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.66 -36.36 8.76 25.60 0.22 -36.13 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.22 11.08 2.68 29.85 0.08 11.16 16 10 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 11 O -0.58 -29.23 9.64 -148.98 -1.44 -30.67 16 12 C 0.05 2.12 4.40 86.30 0.38 2.50 16 13 N -0.55 -19.00 5.16 -885.54 -4.57 -23.56 16 14 C 0.05 1.76 5.52 86.65 0.48 2.24 16 15 C -0.16 -3.95 5.27 31.78 0.17 -3.78 16 16 C -0.09 -1.83 3.06 -9.41 -0.03 -1.85 16 17 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 18 C -0.59 -6.25 5.58 71.98 0.40 -5.85 16 19 S 2.62 40.93 5.76 -56.49 -0.33 40.61 16 20 N -1.24 -8.90 9.43 37.02 0.35 -8.56 16 21 O -1.01 -24.52 18.10 -127.65 -2.31 -26.83 16 22 O -1.00 -23.86 16.89 -127.65 -2.16 -26.01 16 23 C 0.05 1.30 6.15 86.77 0.53 1.84 16 24 H 0.27 17.31 6.47 -92.71 -0.60 16.71 16 25 H 0.36 16.10 7.92 -74.06 -0.59 15.51 16 26 H 0.03 1.24 7.96 -2.38 -0.02 1.23 16 27 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 2.10 5.19 -2.39 -0.01 2.08 16 30 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 31 H 0.09 1.99 8.02 -2.39 -0.02 1.98 16 32 H 0.16 0.93 8.11 -2.39 -0.02 0.91 16 33 H 0.17 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.43 0.06 8.83 -96.75 -0.85 -0.79 16 35 H 0.42 2.63 8.96 -96.76 -0.87 1.76 16 36 H 0.06 1.34 7.71 -2.39 -0.02 1.32 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -81.65 309.91 -6.44 -88.09 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -1.03 Total: 23.10 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 2.69 Total: -30.49 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -3.93 Total: -89.32 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -5.90 Total: -83.51 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.33 Total: 40.61 kcal Total: -81.65 -6.44 -88.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656343833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.935 kcal (2) G-P(sol) polarization free energy of solvation -81.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds