Wall clock time and date at job start Tue Mar 31 2020 00:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46998 * 269.99626 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.46870 * 150.00084 * 3 2 1 7 7 C 1.37877 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00203 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46531 * 299.99838 * 9 7 2 11 11 O 1.42896 * 109.47168 * 59.99639 * 9 7 2 12 12 C 1.52992 * 109.47251 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47383 * 177.14012 * 12 9 7 14 14 C 1.46843 * 111.00155 * 284.21882 * 13 12 9 15 15 C 1.53032 * 109.51876 * 174.16035 * 14 13 12 16 16 C 1.53106 * 109.28883 * 59.18515 * 15 14 13 17 17 S 1.81398 * 109.52816 * 182.43613 * 16 15 14 18 18 N 1.65604 * 104.44586 * 304.67796 * 17 16 15 19 19 O 1.42104 * 110.54140 * 56.29959 * 17 16 15 20 20 O 1.42097 * 110.54590 * 193.05088 * 17 16 15 21 21 C 1.53114 * 109.15240 * 302.34110 * 16 15 14 22 22 C 1.46846 * 111.00307 * 160.00449 * 13 12 9 23 23 H 0.97004 * 119.99684 * 0.02562 * 1 2 3 24 24 H 0.96702 * 114.00435 * 59.99845 * 11 9 7 25 25 H 1.09004 * 109.47332 * 57.13836 * 12 9 7 26 26 H 1.08998 * 109.47408 * 297.14112 * 12 9 7 27 27 H 1.09001 * 109.46335 * 294.17280 * 14 13 12 28 28 H 1.09006 * 109.46357 * 54.14932 * 14 13 12 29 29 H 1.09002 * 109.50507 * 179.10958 * 15 14 13 30 30 H 1.09000 * 109.50601 * 299.23425 * 15 14 13 31 31 H 1.08996 * 109.57749 * 62.27083 * 16 15 14 32 32 H 0.97003 * 119.99592 * 149.99996 * 18 17 16 33 33 H 0.96999 * 120.00353 * 329.99648 * 18 17 16 34 34 H 1.09005 * 109.50568 * 297.71378 * 21 16 15 35 35 H 1.09002 * 109.53863 * 177.61752 * 21 16 15 36 36 H 1.08996 * 109.46188 * 305.85593 * 22 13 12 37 37 H 1.09000 * 109.45947 * 65.83529 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5119 -4.9332 0.0696 14 6 1.0081 -5.1770 1.4272 15 6 0.1301 -6.4304 1.4293 16 6 0.9555 -7.6270 0.9488 17 16 -0.0981 -9.1020 0.8801 18 7 -0.7323 -9.2281 2.4047 19 8 -1.2272 -8.8700 0.0490 20 8 0.6927 -10.2732 0.7314 21 6 1.5085 -7.3276 -0.4473 22 6 2.3467 -6.0483 -0.3952 23 1 -0.4850 0.8401 -0.0004 24 1 0.9221 -2.5300 -1.9975 25 1 2.9051 -3.5760 0.8638 26 1 2.8375 -3.6337 -0.9139 27 1 1.8487 -5.3213 2.1061 28 1 0.4192 -4.3205 1.7554 29 1 -0.2309 -6.6201 2.4402 30 1 -0.7182 -6.2816 0.7612 31 1 1.7816 -7.8012 1.6381 32 1 -1.6086 -9.6234 2.5342 33 1 -0.2275 -8.9067 3.1681 34 1 0.6819 -7.1929 -1.1450 35 1 2.1322 -8.1581 -0.7782 36 1 2.7301 -5.8245 -1.3907 37 1 3.1809 -6.1885 0.2922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658074801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:21 Heat of formation + Delta-G solvation = -126.450971 kcal Electronic energy + Delta-G solvation = -20528.881576 eV Core-core repulsion = 17239.964854 eV Total energy + Delta-G solvation = -3288.916721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.91834 -37.13035 -36.04440 -35.74824 -33.52659 -33.09442 -32.07925 -30.85368 -28.36932 -25.49462 -23.43833 -23.11196 -20.52225 -19.97294 -19.45380 -17.84532 -17.42181 -17.02951 -16.30488 -15.59837 -15.01895 -14.98609 -14.66906 -14.42002 -13.98405 -13.82819 -13.41556 -13.15518 -12.70829 -12.31468 -12.20744 -12.15197 -12.09376 -12.06138 -11.28565 -11.24655 -11.04522 -11.00164 -10.90034 -10.79755 -10.62841 -10.41519 -10.17822 -9.95935 -9.04407 -8.59257 -8.17217 -7.67493 -6.02083 -4.21023 0.11952 2.70772 3.25682 3.32998 3.34802 3.52455 4.05015 4.19734 4.25648 4.42471 4.65116 4.86706 5.16044 5.25475 5.35442 5.44410 5.46561 5.51469 5.59987 5.76119 5.85394 5.95486 6.00836 6.08131 6.23145 6.30035 6.54761 6.77036 6.83196 7.45198 7.52385 7.74993 7.86521 8.18238 8.83142 9.45267 9.61723 11.01888 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.003758 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.545108 B = 7449.885939 C = 7608.402891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.577 4.577 8 H 0.054 0.946 9 C 0.240 3.760 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.527 5.527 14 C 0.064 3.936 15 C -0.100 4.100 16 C -0.577 4.577 17 S 2.614 3.386 18 N -1.250 6.250 19 O -0.957 6.957 20 O -0.970 6.970 21 C -0.103 4.103 22 C 0.064 3.936 23 H 0.260 0.740 24 H 0.342 0.658 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.419 0.581 33 H 0.412 0.588 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -16.078 5.086 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.181 3.819 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.096 4.096 13 N -0.252 5.252 14 C -0.065 4.065 15 C -0.139 4.139 16 C -0.687 4.687 17 S 2.706 3.294 18 N -0.922 5.922 19 O -0.947 6.947 20 O -0.959 6.959 21 C -0.142 4.142 22 C -0.065 4.065 23 H 0.070 0.930 24 H 0.185 0.815 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.817 -16.609 4.318 17.180 hybrid contribution 1.947 1.446 1.047 2.641 sum 2.764 -15.163 5.365 16.320 Atomic orbital electron populations 1.70084 1.05905 1.26422 1.46881 1.25015 0.94666 0.99044 0.93834 0.86688 0.79911 0.83598 0.78238 1.20501 1.21112 1.19933 1.21662 0.93106 0.91689 1.55067 0.92811 1.19281 0.87769 0.88299 0.86522 0.92871 1.86576 1.37729 1.96279 1.14927 1.23121 0.97078 0.89641 0.99774 1.61926 1.38254 1.02034 1.22944 1.21983 0.97489 0.97292 0.89772 1.21462 0.98481 0.92334 1.01597 1.30351 1.13936 1.17380 1.07063 1.04892 0.75345 0.76121 0.73001 1.53196 1.32448 1.80051 1.26542 1.93610 1.48840 1.86302 1.65926 1.93600 1.72521 1.44818 1.84931 1.21439 1.01513 0.99231 0.92054 1.21961 0.93514 0.90376 1.00686 0.92966 0.81549 0.95240 0.91870 0.95391 0.89202 0.90511 0.88737 0.85023 0.75159 0.76166 0.89026 0.90405 0.90182 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 12.84 55.43 0.71 -24.35 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.58 -15.46 8.76 -34.44 -0.30 -15.76 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.24 5.88 2.90 -27.88 -0.08 5.80 16 10 H 0.05 1.43 6.76 -51.93 -0.35 1.08 16 11 O -0.55 -14.21 12.65 -35.23 -0.45 -14.65 16 12 C 0.03 0.61 4.59 -3.83 -0.02 0.59 16 13 N -0.53 -8.87 4.50 -234.68 -1.06 -9.92 16 14 C 0.06 0.95 5.29 -3.84 -0.02 0.93 16 15 C -0.10 -1.15 5.23 -26.66 -0.14 -1.29 16 16 C -0.58 -5.72 2.93 -26.62 -0.08 -5.80 16 17 S 2.61 27.06 5.42 -107.50 -0.58 26.48 16 18 N -1.25 -8.36 8.89 60.35 0.54 -7.82 16 19 O -0.96 -13.60 18.09 -57.54 -1.04 -14.65 16 20 O -0.97 -13.09 18.10 -57.54 -1.04 -14.13 16 21 C -0.10 -1.19 5.39 -26.65 -0.14 -1.33 16 22 C 0.06 0.87 5.43 -3.83 -0.02 0.84 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.34 7.86 9.04 45.56 0.41 8.27 16 25 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 26 H 0.06 1.20 7.79 -51.93 -0.40 0.79 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 1.52 6.68 -51.93 -0.35 1.17 16 29 H 0.08 0.62 7.84 -51.93 -0.41 0.22 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.42 2.37 8.96 -34.47 -0.31 2.06 16 33 H 0.41 1.66 8.96 -34.48 -0.31 1.35 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.05 7.93 -51.93 -0.41 0.63 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -36.00 314.12 -8.72 -44.73 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.62 Total: 7.69 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.90 Total: -13.90 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.19 Total: -42.09 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -2.53 Total: -43.43 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 27.06 SS G_CDS: -0.58 Total: 26.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.00 -8.72 -44.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658074801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.726 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds