Wall clock time and date at job start Tue Mar 31 2020 00:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46998 * 269.99626 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.46870 * 150.00084 * 3 2 1 7 7 C 1.37877 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00203 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46531 * 299.99838 * 9 7 2 11 11 O 1.42896 * 109.47168 * 59.99639 * 9 7 2 12 12 C 1.52992 * 109.47251 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47383 * 177.14012 * 12 9 7 14 14 C 1.46843 * 111.00155 * 284.21882 * 13 12 9 15 15 C 1.53032 * 109.51876 * 174.16035 * 14 13 12 16 16 C 1.53106 * 109.28883 * 59.18515 * 15 14 13 17 17 S 1.81398 * 109.52816 * 182.43613 * 16 15 14 18 18 N 1.65604 * 104.44586 * 304.67796 * 17 16 15 19 19 O 1.42104 * 110.54140 * 56.29959 * 17 16 15 20 20 O 1.42097 * 110.54590 * 193.05088 * 17 16 15 21 21 C 1.53114 * 109.15240 * 302.34110 * 16 15 14 22 22 C 1.46846 * 111.00307 * 160.00449 * 13 12 9 23 23 H 0.97004 * 119.99684 * 0.02562 * 1 2 3 24 24 H 0.96702 * 114.00435 * 59.99845 * 11 9 7 25 25 H 1.09004 * 109.47332 * 57.13836 * 12 9 7 26 26 H 1.08998 * 109.47408 * 297.14112 * 12 9 7 27 27 H 1.09001 * 109.46335 * 294.17280 * 14 13 12 28 28 H 1.09006 * 109.46357 * 54.14932 * 14 13 12 29 29 H 1.09002 * 109.50507 * 179.10958 * 15 14 13 30 30 H 1.09000 * 109.50601 * 299.23425 * 15 14 13 31 31 H 1.08996 * 109.57749 * 62.27083 * 16 15 14 32 32 H 0.97003 * 119.99592 * 149.99996 * 18 17 16 33 33 H 0.96999 * 120.00353 * 329.99648 * 18 17 16 34 34 H 1.09005 * 109.50568 * 297.71378 * 21 16 15 35 35 H 1.09002 * 109.53863 * 177.61752 * 21 16 15 36 36 H 1.08996 * 109.46188 * 305.85593 * 22 13 12 37 37 H 1.09000 * 109.45947 * 65.83529 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5119 -4.9332 0.0696 14 6 1.0081 -5.1770 1.4272 15 6 0.1301 -6.4304 1.4293 16 6 0.9555 -7.6270 0.9488 17 16 -0.0981 -9.1020 0.8801 18 7 -0.7323 -9.2281 2.4047 19 8 -1.2272 -8.8700 0.0490 20 8 0.6927 -10.2732 0.7314 21 6 1.5085 -7.3276 -0.4473 22 6 2.3467 -6.0483 -0.3952 23 1 -0.4850 0.8401 -0.0004 24 1 0.9221 -2.5300 -1.9975 25 1 2.9051 -3.5760 0.8638 26 1 2.8375 -3.6337 -0.9139 27 1 1.8487 -5.3213 2.1061 28 1 0.4192 -4.3205 1.7554 29 1 -0.2309 -6.6201 2.4402 30 1 -0.7182 -6.2816 0.7612 31 1 1.7816 -7.8012 1.6381 32 1 -1.6086 -9.6234 2.5342 33 1 -0.2275 -8.9067 3.1681 34 1 0.6819 -7.1929 -1.1450 35 1 2.1322 -8.1581 -0.7782 36 1 2.7301 -5.8245 -1.3907 37 1 3.1809 -6.1885 0.2922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658074801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:20 Heat of formation + Delta-G solvation = -159.871179 kcal Electronic energy + Delta-G solvation = -20530.330785 eV Core-core repulsion = 17239.964854 eV Total energy + Delta-G solvation = -3290.365930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09039 -38.10001 -37.52607 -37.00453 -34.58405 -34.17730 -34.00386 -31.86565 -30.11483 -27.12518 -24.82428 -24.23607 -22.12885 -21.10809 -20.27613 -19.07417 -18.55927 -18.19241 -17.18886 -16.70661 -16.64682 -16.39564 -16.20590 -15.82684 -15.36527 -15.06462 -14.69162 -14.50967 -14.23973 -13.45223 -13.26065 -13.20527 -13.14959 -13.11959 -13.06275 -12.81565 -12.68988 -12.38371 -12.25049 -12.05741 -11.92616 -11.64602 -11.33090 -11.09393 -10.88357 -10.68431 -10.08303 -9.03294 -8.11473 -6.37710 -0.72078 1.41471 1.41833 1.52388 1.97693 2.39259 2.70765 3.04743 3.14985 3.20178 3.39895 3.75155 3.98100 4.13948 4.29628 4.33957 4.41936 4.49046 4.51297 4.65717 4.69980 4.78665 4.88251 4.95518 5.01959 5.07770 5.21606 5.33366 5.62293 5.78308 6.03968 6.25179 6.36188 6.41423 6.76873 7.37091 7.66015 8.92787 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.003758 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.545108 B = 7449.885939 C = 7608.402891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.238 3.762 10 H 0.020 0.980 11 O -0.572 6.572 12 C 0.050 3.950 13 N -0.548 5.548 14 C 0.060 3.940 15 C -0.098 4.098 16 C -0.566 4.566 17 S 2.638 3.362 18 N -1.236 6.236 19 O -1.000 7.000 20 O -0.999 6.999 21 C -0.110 4.110 22 C 0.063 3.937 23 H 0.260 0.740 24 H 0.351 0.649 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.426 0.574 33 H 0.428 0.572 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -16.975 6.022 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.180 3.820 10 H 0.038 0.962 11 O -0.375 6.375 12 C -0.078 4.078 13 N -0.272 5.272 14 C -0.069 4.069 15 C -0.137 4.137 16 C -0.677 4.677 17 S 2.732 3.268 18 N -0.914 5.914 19 O -0.989 6.989 20 O -0.988 6.988 21 C -0.149 4.149 22 C -0.066 4.066 23 H 0.069 0.931 24 H 0.195 0.805 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.258 0.742 33 H 0.257 0.743 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.423 -17.531 5.265 18.465 hybrid contribution 1.436 1.698 0.783 2.358 sum 3.859 -15.833 6.048 17.383 Atomic orbital electron populations 1.70230 1.07696 1.27279 1.48496 1.25879 0.95412 1.02841 0.93429 0.85583 0.78743 0.78968 0.78399 1.19931 1.21004 1.18840 1.22088 0.93536 0.92911 1.54179 0.92272 1.19171 0.87863 0.90000 0.84961 0.96235 1.86519 1.38797 1.96460 1.15738 1.22667 0.95534 0.89557 1.00074 1.61802 1.38930 1.02022 1.24493 1.22015 0.98172 0.97634 0.89116 1.21448 0.97322 0.91468 1.03449 1.30263 1.14612 1.15856 1.07018 1.03903 0.74318 0.75473 0.73111 1.52799 1.32921 1.79899 1.25747 1.93559 1.50657 1.86779 1.67948 1.93572 1.73124 1.46340 1.85748 1.21504 1.01338 0.99207 0.92857 1.22039 0.93818 0.89737 1.01019 0.93060 0.80502 0.95104 0.91301 0.93497 0.92387 0.86772 0.91050 0.81486 0.74219 0.74270 0.90600 0.87743 0.90068 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.75 12.84 21.45 0.28 -53.48 16 2 C 0.03 1.48 5.40 84.65 0.46 1.94 16 3 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.59 -31.78 8.76 25.60 0.22 -31.56 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 9 C 0.24 11.96 2.90 29.85 0.09 12.05 16 10 H 0.02 1.12 6.76 -2.39 -0.02 1.10 16 11 O -0.57 -30.18 12.65 -148.98 -1.88 -32.07 16 12 C 0.05 1.93 4.59 86.30 0.40 2.32 16 13 N -0.55 -18.09 4.50 -896.40 -4.03 -22.13 16 14 C 0.06 1.72 5.29 86.32 0.46 2.17 16 15 C -0.10 -2.09 5.23 30.64 0.16 -1.93 16 16 C -0.57 -9.70 2.93 30.67 0.09 -9.61 16 17 S 2.64 49.66 5.42 -56.49 -0.31 49.36 16 18 N -1.24 -13.23 8.89 37.02 0.33 -12.90 16 19 O -1.00 -27.85 18.09 -127.65 -2.31 -30.16 16 20 O -1.00 -24.96 18.10 -127.65 -2.31 -27.27 16 21 C -0.11 -2.31 5.39 30.65 0.17 -2.15 16 22 C 0.06 1.56 5.43 86.33 0.47 2.03 16 23 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 24 H 0.35 16.52 9.04 -74.06 -0.67 15.85 16 25 H 0.03 1.17 8.00 -2.38 -0.02 1.15 16 26 H 0.07 2.56 7.79 -2.39 -0.02 2.54 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 2.03 6.68 -2.38 -0.02 2.01 16 29 H 0.11 1.53 7.84 -2.39 -0.02 1.51 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.43 3.83 8.96 -96.74 -0.87 2.96 16 33 H 0.43 1.92 8.96 -96.74 -0.87 1.06 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.98 7.93 -2.39 -0.02 1.97 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.85 314.12 -7.01 -85.86 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -1.30 Total: 22.74 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 2.50 Total: -24.72 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.43 Total: -88.51 kcal Atomic # 8 Polarization: -83.00 SS G_CDS: -6.50 Total: -89.50 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.31 Total: 49.36 kcal Total: -78.85 -7.01 -85.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658074801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.014 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds