Wall clock time and date at job start Tue Mar 31 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47067 * 2 1 4 4 C 1.35964 * 117.00320 * 179.97438 * 3 2 1 5 5 C 1.37935 * 119.98247 * 0.23828 * 4 3 2 6 6 C 1.40219 * 119.82391 * 180.29598 * 5 4 3 7 7 C 1.46694 * 120.10304 * 179.74491 * 6 5 4 8 8 N 1.30733 * 119.99709 * 179.97438 * 7 6 5 9 9 N 1.40093 * 119.99716 * 179.97438 * 8 7 6 10 10 C 1.34785 * 119.99940 * 179.97438 * 9 8 7 11 11 O 1.21989 * 119.99810 * 0.02562 * 10 9 8 12 12 C 1.40583 * 119.99998 * 179.97438 * 10 9 8 13 13 H 1.08004 * 120.00041 * 0.02562 * 12 10 9 14 14 C 1.40194 * 119.99646 * 180.02562 * 12 10 9 15 15 N 1.30611 * 120.00164 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99587 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46737 * 120.00190 * 16 14 12 19 19 H 1.48502 * 109.46967 * 240.00017 * 16 14 12 20 20 C 1.40351 * 119.78880 * 359.71680 * 6 5 4 21 21 C 1.37582 * 119.96981 * 0.02562 * 20 6 5 22 22 C 1.39084 * 120.17578 * 0.02562 * 21 20 6 23 23 O 1.35735 * 119.89286 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47112 * 60.00334 * 1 2 3 25 25 H 1.09001 * 109.46540 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47397 * 299.99727 * 1 2 3 27 27 H 1.08994 * 109.47539 * 239.99995 * 2 1 3 28 28 H 1.09004 * 109.47112 * 119.99666 * 2 1 3 29 29 H 1.08006 * 120.08937 * 0.02562 * 5 4 3 30 30 H 1.08004 * 120.00106 * 359.97438 * 7 6 5 31 31 H 0.96998 * 120.00448 * 359.97438 * 9 8 7 32 32 H 0.96998 * 119.99434 * 180.02562 * 15 14 12 33 33 H 1.08002 * 120.01177 * 179.97438 * 20 6 5 34 34 H 1.08000 * 119.91273 * 179.97438 * 21 20 6 35 35 H 0.96696 * 114.00148 * 90.00075 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1942 0.4314 -0.0039 6 6 5.5838 0.6190 0.0029 7 6 6.4827 -0.5402 0.0039 8 7 7.7779 -0.3629 0.0098 9 7 8.6364 -1.4699 0.0113 10 6 9.9718 -1.2871 0.0168 11 8 10.4328 -0.1577 0.0211 12 6 10.8334 -2.3981 0.0189 13 1 10.4252 -3.3980 0.0155 14 6 12.2223 -2.2079 0.0252 15 7 12.7159 -0.9986 0.0297 16 14 13.3671 -3.6841 0.0286 17 1 12.5641 -4.9331 0.0230 18 1 14.2289 -3.6448 -1.1801 19 1 14.2183 -3.6476 1.2449 20 6 6.1117 1.9194 0.0083 21 6 5.2660 3.0046 0.0073 22 6 3.8879 2.8169 0.0016 23 8 3.0588 3.8916 0.0012 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7827 -0.5672 -0.0082 30 1 6.0745 -1.5401 -0.0002 31 1 8.2699 -2.3680 0.0083 32 1 13.6769 -0.8672 0.0337 33 1 7.1815 2.0681 0.0140 34 1 5.6733 4.0049 0.0118 35 1 2.8219 4.2053 -0.8823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000143675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:24 Heat of formation + Delta-G solvation = -83.069201 kcal Electronic energy + Delta-G solvation = -20081.732070 eV Core-core repulsion = 16659.252572 eV Total energy + Delta-G solvation = -3422.479498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35449 -39.66160 -38.92130 -38.01896 -36.53225 -34.72680 -33.11656 -32.56466 -31.26589 -29.87171 -28.36580 -25.20703 -24.59429 -22.75002 -22.34870 -21.44149 -19.79121 -19.40788 -18.33340 -17.92873 -17.57716 -17.12120 -16.71545 -16.36584 -16.00283 -15.50980 -15.23370 -14.96253 -14.74681 -14.56226 -14.11582 -13.49793 -13.38167 -13.34797 -13.08929 -13.07702 -12.84995 -12.74457 -12.42311 -12.17285 -11.98493 -11.61654 -11.53521 -11.04718 -11.02766 -10.20800 -10.01017 -9.46948 -8.79488 -8.44338 -7.11598 -0.28410 0.37527 1.32565 1.39312 1.47702 1.59258 2.00602 2.19920 2.33104 2.39536 2.74524 3.23944 3.62737 3.70153 3.80385 4.09714 4.11398 4.18582 4.25412 4.43594 4.51987 4.55877 4.77838 4.83033 4.92159 4.99240 5.15952 5.19354 5.29273 5.33233 5.54378 5.64024 5.78968 6.00014 6.31644 6.66346 6.88292 6.90193 7.41259 8.39252 8.56395 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.002973 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.816620 B = 9415.752890 C =10220.562666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.038 3.962 3 O -0.319 6.319 4 C 0.099 3.901 5 C -0.163 4.163 6 C -0.016 4.016 7 C 0.060 3.940 8 N -0.253 5.253 9 N -0.592 5.592 10 C 0.543 3.457 11 O -0.616 6.616 12 C -0.559 4.559 13 H 0.097 0.903 14 C 0.029 3.971 15 N -0.800 5.800 16 Si 1.011 2.989 17 H -0.242 1.242 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.125 4.125 21 C -0.109 4.109 22 C 0.075 3.925 23 O -0.495 6.495 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.165 0.835 30 H 0.145 0.855 31 H 0.386 0.614 32 H 0.282 0.718 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 -1.453 -1.842 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 O -0.233 6.233 4 C 0.052 3.948 5 C -0.184 4.184 6 C -0.018 4.018 7 C -0.150 4.150 8 N -0.060 5.060 9 N -0.338 5.338 10 C 0.352 3.648 11 O -0.501 6.501 12 C -0.595 4.595 13 H 0.115 0.885 14 C -0.190 4.190 15 N -0.428 5.428 16 Si 0.829 3.171 17 H -0.165 1.165 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.145 4.145 21 C -0.127 4.127 22 C 0.029 3.971 23 O -0.307 6.307 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.162 0.838 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.168 0.832 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -20.917 0.076 -1.232 20.953 hybrid contribution 0.131 -1.397 -0.473 1.481 sum -20.786 -1.321 -1.705 20.897 Atomic orbital electron populations 1.21790 0.91407 1.04132 1.03150 1.23158 0.97023 0.80847 1.02599 1.86130 1.17422 1.31189 1.88606 1.19235 0.83416 0.93283 0.98825 1.21322 0.91151 0.99461 1.06493 1.18404 0.91884 0.91317 1.00236 1.24527 0.89710 0.98779 1.01946 1.74919 1.04884 1.17595 1.08627 1.47354 1.05680 1.03862 1.76873 1.17206 0.78826 0.90802 0.77924 1.90668 1.75103 1.27456 1.56854 1.20317 0.91887 0.93886 1.53397 0.88508 1.27177 1.00530 1.00474 0.90815 1.70190 1.14485 1.25325 1.32818 0.84785 0.76837 0.76711 0.78803 1.16462 1.19009 1.19048 1.21298 1.00077 0.92053 1.01116 1.21290 0.91292 1.00142 0.99979 1.18058 0.88571 0.84490 1.06017 1.84753 1.65970 1.44916 1.35069 0.91699 0.88198 0.92083 0.90614 0.91088 0.81810 0.83779 0.77601 0.90786 0.86880 0.83173 0.73655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.04 0.53 5.46 71.98 0.39 0.92 16 3 O -0.32 -6.81 9.92 -79.23 -0.79 -7.60 16 4 C 0.10 2.36 6.70 22.56 0.15 2.51 16 5 C -0.16 -3.77 8.78 22.68 0.20 -3.58 16 6 C -0.02 -0.48 5.88 -20.07 -0.12 -0.60 16 7 C 0.06 1.99 10.75 87.07 0.94 2.93 16 8 N -0.25 -11.56 10.18 -52.27 -0.53 -12.09 16 9 N -0.59 -28.80 6.26 -180.56 -1.13 -29.93 16 10 C 0.54 32.68 7.65 84.81 0.65 33.32 16 11 O -0.62 -43.37 15.19 -5.28 -0.08 -43.45 16 12 C -0.56 -31.16 9.25 23.32 0.22 -30.95 16 13 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 14 C 0.03 1.56 5.50 85.35 0.47 2.03 16 15 N -0.80 -48.35 11.70 21.86 0.26 -48.09 16 16 Si 1.01 39.05 29.56 68.60 2.03 41.08 16 17 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 20 C -0.12 -4.05 9.58 22.63 0.22 -3.83 16 21 C -0.11 -2.93 9.96 22.32 0.22 -2.70 16 22 C 0.08 1.89 6.74 22.84 0.15 2.05 16 23 O -0.49 -10.85 13.27 -76.66 -1.02 -11.87 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.85 7.65 -2.39 -0.02 0.83 16 28 H 0.07 0.87 7.67 -2.39 -0.02 0.86 16 29 H 0.16 2.68 6.28 -2.91 -0.02 2.66 16 30 H 0.15 3.60 8.03 -2.91 -0.02 3.58 16 31 H 0.39 15.28 8.61 -213.33 -1.84 13.44 16 32 H 0.28 15.14 8.29 -92.71 -0.77 14.38 16 33 H 0.11 4.37 7.54 -2.91 -0.02 4.35 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.41 4.94 9.06 -74.06 -0.67 4.27 16 Total: -1.00 -83.93 317.41 1.61 -82.32 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.36 Total: 28.28 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.23 Total: 1.35 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.41 Total: -90.11 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -1.88 Total: -62.92 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -83.93 1.61 -82.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.747 kcal (2) G-P(sol) polarization free energy of solvation -83.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds