Wall clock time and date at job start Tue Mar 31 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47672 * 2 1 4 4 C 1.46494 * 119.99599 * 75.00962 * 3 2 1 5 5 C 1.50703 * 109.46922 * 90.00821 * 4 3 2 6 6 H 1.08007 * 120.00061 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00098 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00227 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47277 * 59.99387 * 9 7 5 11 11 H 1.48498 * 109.47251 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47014 * 299.99907 * 9 7 5 13 13 C 1.34778 * 119.99800 * 255.01750 * 3 2 1 14 14 O 1.21554 * 119.99410 * 183.84415 * 13 3 2 15 15 C 1.47842 * 120.00099 * 3.84262 * 13 3 2 16 16 C 1.39591 * 120.14489 * 22.58197 * 15 13 3 17 17 C 1.37943 * 119.85065 * 179.69617 * 16 15 13 18 18 C 1.38378 * 120.14570 * 0.60207 * 17 16 15 19 19 C 1.38341 * 120.29323 * 359.66849 * 18 17 16 20 20 N 1.48011 * 119.92746 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99855 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00184 * 0.02862 * 20 19 18 23 23 C 1.37979 * 120.14375 * 0.03163 * 19 18 17 24 24 H 1.08997 * 109.46936 * 300.00230 * 1 2 3 25 25 H 1.09001 * 109.46956 * 59.99879 * 1 2 3 26 26 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47097 * 240.00087 * 2 1 3 28 28 H 1.09001 * 109.46956 * 120.00121 * 2 1 3 29 29 H 1.08998 * 109.47961 * 330.00199 * 4 3 2 30 30 H 1.09006 * 109.47236 * 209.99996 * 4 3 2 31 31 H 0.96996 * 120.00767 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.07606 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.92568 * 180.29548 * 17 16 15 34 34 H 1.07997 * 119.85312 * 179.69853 * 18 17 16 35 35 H 1.07997 * 120.07752 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9532 2.1811 1.2256 5 6 3.2249 1.9979 2.0132 6 1 4.0037 1.3500 1.6385 7 6 3.3944 2.6573 3.2121 8 7 2.4464 3.4466 3.6682 9 14 4.9703 2.4297 4.1887 10 1 6.1281 2.8706 3.3701 11 1 4.9043 3.2406 5.4310 12 1 5.1311 0.9962 4.5419 13 6 2.5276 1.9159 -1.1276 14 8 2.9968 3.0371 -1.1104 15 6 2.5155 1.1387 -2.3852 16 6 1.6023 0.0970 -2.5567 17 6 1.5922 -0.6201 -3.7351 18 6 2.4929 -0.3169 -4.7409 19 6 3.4043 0.7106 -4.5750 20 7 4.3637 1.0283 -5.6564 21 8 5.1670 1.9324 -5.5116 22 8 4.3499 0.3858 -6.6910 23 6 3.4209 1.4397 -3.4037 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.1037 1.8568 1.8265 30 1 1.8346 3.2333 0.9668 31 1 2.5654 3.9103 4.5118 32 1 0.9022 -0.1441 -1.7704 33 1 0.8829 -1.4232 -3.8709 34 1 2.4840 -0.8846 -5.6595 35 1 4.1326 2.2418 -3.2756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001587068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:24 Heat of formation + Delta-G solvation = 20.805052 kcal Electronic energy + Delta-G solvation = -21291.403444 eV Core-core repulsion = 17873.428272 eV Total energy + Delta-G solvation = -3417.975172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25659 -40.52687 -38.27307 -36.62242 -35.98142 -33.23063 -32.07179 -31.62406 -30.48464 -27.54499 -26.59346 -24.39273 -23.40280 -22.60667 -22.24870 -20.07880 -18.74888 -18.46379 -17.59427 -17.25713 -16.61780 -16.30135 -15.94081 -15.02476 -14.63065 -14.47010 -14.23639 -14.01574 -13.52263 -13.20289 -12.52231 -12.23619 -12.18783 -11.86036 -11.74703 -11.61207 -11.32429 -11.24604 -11.19445 -11.05316 -10.91688 -10.67118 -10.24904 -9.81165 -9.69809 -9.55140 -9.26189 -8.52626 -7.93335 -6.14420 -4.19755 -0.30333 0.51367 1.18647 1.28759 2.75420 3.26397 3.31574 3.33101 3.45236 3.65154 4.20604 4.25092 4.37830 4.47464 4.57790 4.68023 4.93286 5.04100 5.20496 5.27040 5.30784 5.43014 5.49691 5.62441 5.72995 5.77624 5.98185 6.02245 6.26911 6.33017 6.84842 7.23755 7.31154 7.57088 7.80363 8.08307 8.11059 8.65457 8.85372 9.45714 10.93784 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.004654 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.139796 B = 6015.282677 C = 6869.346477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 N -0.583 5.583 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.543 3.457 14 O -0.522 6.522 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.127 4.127 18 C -0.044 4.044 19 C -0.054 4.054 20 N 0.031 4.969 21 O -0.155 6.155 22 O -0.165 6.165 23 C -0.004 4.004 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.183 0.817 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -11.482 -12.738 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.051 4.051 3 N -0.313 5.313 4 C 0.128 3.872 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.329 3.671 14 O -0.399 6.399 15 C -0.119 4.119 16 C -0.093 4.093 17 C -0.146 4.146 18 C -0.064 4.064 19 C -0.137 4.137 20 N 0.550 4.450 21 O -0.372 6.372 22 O -0.380 6.380 23 C -0.024 4.024 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.859 -10.899 -11.998 17.236 hybrid contribution 1.135 -0.068 0.338 1.187 sum -4.724 -10.967 -11.660 16.690 Atomic orbital electron populations 1.22316 0.96083 1.02256 1.03279 1.22297 0.94125 0.84752 1.03887 1.48178 1.58684 1.13019 1.11456 1.19373 0.97496 0.91512 0.78773 1.21343 1.02386 1.28386 1.04855 0.92437 1.24915 0.96853 0.94745 0.97379 1.69905 1.33075 1.29139 1.21102 0.86541 0.83536 0.78098 0.79178 1.20076 1.21076 1.20226 1.17882 0.80078 0.86422 0.82763 1.90815 1.44935 1.19183 1.84990 1.20341 0.97385 0.98041 0.96146 1.23215 0.97049 0.91254 0.97798 1.21226 0.99397 1.01612 0.92341 1.21205 0.91276 0.93276 1.00613 1.20990 0.98066 1.04214 0.90466 1.43583 1.00501 0.99366 1.01541 1.94586 1.33240 1.22776 1.86636 1.94505 1.76777 1.50239 1.16477 1.21145 0.96311 0.96299 0.88640 0.90606 0.92279 0.91356 0.89346 0.89725 0.94426 0.93618 0.92513 0.80040 0.83046 0.82843 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.04 37.16 0.34 -1.63 16 2 C 0.07 1.00 5.59 -4.04 -0.02 0.98 16 3 N -0.58 -11.29 2.49 -176.17 -0.44 -11.73 16 4 C 0.25 6.05 5.08 -5.20 -0.03 6.02 16 5 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.54 10.73 7.52 -12.33 -0.09 10.64 16 14 O -0.52 -12.71 16.19 5.32 0.09 -12.63 16 15 C -0.11 -1.70 5.61 -104.97 -0.59 -2.29 16 16 C -0.08 -0.79 7.52 -39.19 -0.29 -1.09 16 17 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 18 C -0.04 -0.43 9.55 -39.49 -0.38 -0.80 16 19 C -0.05 -0.71 6.85 -80.01 -0.55 -1.26 16 20 N 0.03 0.45 4.45 33.93 0.15 0.60 16 21 O -0.16 -2.51 18.44 -29.46 -0.54 -3.06 16 22 O -0.17 -2.37 18.44 -29.46 -0.54 -2.91 16 23 C 0.00 -0.06 9.09 -39.18 -0.36 -0.42 16 24 H 0.07 0.98 7.43 -51.93 -0.39 0.59 16 25 H 0.06 0.59 7.02 -51.93 -0.36 0.22 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.98 4.04 -52.39 -0.21 0.77 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.92 7.32 -51.93 -0.38 0.53 16 30 H 0.05 1.27 7.48 -51.93 -0.39 0.89 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.18 1.65 2.30 -52.49 -0.12 1.53 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.15 1.14 7.60 -52.49 -0.40 0.74 16 35 H 0.16 2.61 7.37 -52.49 -0.39 2.22 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -32.69 305.89 -7.20 -39.90 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.45 Total: -1.80 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.79 Total: -4.37 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.45 Total: -36.08 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.00 Total: -18.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.69 -7.20 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001587068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.700 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds