Wall clock time and date at job start Tue Mar 31 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47672 * 2 1 4 4 C 1.46494 * 119.99599 * 75.00962 * 3 2 1 5 5 C 1.50703 * 109.46922 * 90.00821 * 4 3 2 6 6 H 1.08007 * 120.00061 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00098 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00227 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47277 * 59.99387 * 9 7 5 11 11 H 1.48498 * 109.47251 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47014 * 299.99907 * 9 7 5 13 13 C 1.34778 * 119.99800 * 255.01750 * 3 2 1 14 14 O 1.21554 * 119.99410 * 183.84415 * 13 3 2 15 15 C 1.47842 * 120.00099 * 3.84262 * 13 3 2 16 16 C 1.39591 * 120.14489 * 22.58197 * 15 13 3 17 17 C 1.37943 * 119.85065 * 179.69617 * 16 15 13 18 18 C 1.38378 * 120.14570 * 0.60207 * 17 16 15 19 19 C 1.38341 * 120.29323 * 359.66849 * 18 17 16 20 20 N 1.48011 * 119.92746 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99855 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00184 * 0.02862 * 20 19 18 23 23 C 1.37979 * 120.14375 * 0.03163 * 19 18 17 24 24 H 1.08997 * 109.46936 * 300.00230 * 1 2 3 25 25 H 1.09001 * 109.46956 * 59.99879 * 1 2 3 26 26 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47097 * 240.00087 * 2 1 3 28 28 H 1.09001 * 109.46956 * 120.00121 * 2 1 3 29 29 H 1.08998 * 109.47961 * 330.00199 * 4 3 2 30 30 H 1.09006 * 109.47236 * 209.99996 * 4 3 2 31 31 H 0.96996 * 120.00767 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.07606 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.92568 * 180.29548 * 17 16 15 34 34 H 1.07997 * 119.85312 * 179.69853 * 18 17 16 35 35 H 1.07997 * 120.07752 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9532 2.1811 1.2256 5 6 3.2249 1.9979 2.0132 6 1 4.0037 1.3500 1.6385 7 6 3.3944 2.6573 3.2121 8 7 2.4464 3.4466 3.6682 9 14 4.9703 2.4297 4.1887 10 1 6.1281 2.8706 3.3701 11 1 4.9043 3.2406 5.4310 12 1 5.1311 0.9962 4.5419 13 6 2.5276 1.9159 -1.1276 14 8 2.9968 3.0371 -1.1104 15 6 2.5155 1.1387 -2.3852 16 6 1.6023 0.0970 -2.5567 17 6 1.5922 -0.6201 -3.7351 18 6 2.4929 -0.3169 -4.7409 19 6 3.4043 0.7106 -4.5750 20 7 4.3637 1.0283 -5.6564 21 8 5.1670 1.9324 -5.5116 22 8 4.3499 0.3858 -6.6910 23 6 3.4209 1.4397 -3.4037 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.1037 1.8568 1.8265 30 1 1.8346 3.2333 0.9668 31 1 2.5654 3.9103 4.5118 32 1 0.9022 -0.1441 -1.7704 33 1 0.8829 -1.4232 -3.8709 34 1 2.4840 -0.8846 -5.6595 35 1 4.1326 2.2418 -3.2756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001587068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:24 Heat of formation + Delta-G solvation = 0.058914 kcal Electronic energy + Delta-G solvation = -21292.303065 eV Core-core repulsion = 17873.428272 eV Total energy + Delta-G solvation = -3418.874792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.36566 -41.77151 -39.53812 -37.76485 -37.46699 -35.13184 -33.35004 -32.64222 -31.74074 -29.35126 -27.71002 -25.90513 -24.72435 -23.68424 -23.52392 -21.31156 -19.90485 -19.74260 -18.71569 -18.67057 -18.24952 -17.64705 -17.30765 -16.58649 -16.15053 -15.78467 -15.32170 -15.13034 -14.78534 -14.53704 -14.03821 -13.64955 -13.36223 -13.20939 -13.07550 -12.87719 -12.75318 -12.66421 -12.48817 -12.37477 -12.29787 -12.24521 -11.97085 -11.78121 -11.01505 -10.67761 -10.54049 -10.49831 -9.60629 -8.27251 -6.41396 -1.33975 -0.50183 0.17608 0.24623 1.33844 1.38089 1.44940 1.60838 2.02801 2.35569 2.37768 3.03029 3.16583 3.35350 3.53774 3.62854 3.77523 3.96575 4.06039 4.24825 4.43913 4.51511 4.58545 4.74512 4.87616 4.88985 4.92373 5.01452 5.07181 5.15514 5.34809 5.40927 5.48794 5.73776 5.99833 6.40779 6.53454 6.66671 7.12905 7.31163 8.79870 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.004654 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.139796 B = 6015.282677 C = 6869.346477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 N -0.587 5.587 4 C 0.262 3.738 5 C -0.547 4.547 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.259 1.259 13 C 0.534 3.466 14 O -0.590 6.590 15 C -0.133 4.133 16 C -0.061 4.061 17 C -0.093 4.093 18 C -0.023 4.023 19 C -0.064 4.064 20 N 0.031 4.969 21 O -0.227 6.227 22 O -0.124 6.124 23 C -0.022 4.022 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.075 0.925 29 H 0.037 0.963 30 H -0.002 1.002 31 H 0.268 0.732 32 H 0.202 0.798 33 H 0.215 0.785 34 H 0.191 0.809 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -15.885 -14.267 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.058 4.058 3 N -0.316 5.316 4 C 0.141 3.859 5 C -0.586 4.586 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.183 1.183 13 C 0.322 3.678 14 O -0.471 6.471 15 C -0.137 4.137 16 C -0.078 4.078 17 C -0.111 4.111 18 C -0.042 4.042 19 C -0.148 4.148 20 N 0.547 4.453 21 O -0.427 6.427 22 O -0.353 6.353 23 C -0.043 4.043 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.231 0.769 34 H 0.208 0.792 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.559 -15.240 -13.458 21.691 hybrid contribution 1.556 1.146 0.676 2.047 sum -6.003 -14.094 -12.782 19.951 Atomic orbital electron populations 1.22298 0.93274 1.05067 1.02684 1.22767 0.96414 0.81391 1.05263 1.48156 1.58724 1.14923 1.09776 1.18805 0.96494 0.89957 0.80623 1.21642 1.03165 1.28347 1.05421 0.93157 1.25779 1.00087 0.94353 0.98496 1.70014 1.34929 1.29877 1.21600 0.85534 0.79002 0.79028 0.77664 1.20815 1.20136 1.18304 1.18697 0.78558 0.86098 0.84412 1.90763 1.47782 1.22284 1.86320 1.19817 1.00149 1.00078 0.93698 1.23413 0.95376 0.89383 0.99633 1.21875 0.98518 1.01106 0.89585 1.21811 0.89098 0.91036 1.02271 1.21098 0.98854 1.05533 0.89272 1.43845 1.00561 0.98996 1.01893 1.94621 1.35632 1.24928 1.87516 1.94445 1.75566 1.48759 1.16494 1.20868 0.96642 0.96620 0.90148 0.93308 0.90911 0.86673 0.85795 0.90623 0.94491 0.98381 0.92275 0.78190 0.76857 0.79214 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 9.04 71.98 0.65 -2.60 16 2 C 0.06 1.60 5.59 86.38 0.48 2.09 16 3 N -0.59 -23.51 2.49 -829.57 -2.07 -25.57 16 4 C 0.26 13.63 5.08 85.64 0.43 14.06 16 5 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.92 -55.00 13.29 21.45 0.28 -54.71 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 13 C 0.53 22.32 7.52 86.79 0.65 22.97 16 14 O -0.59 -31.57 16.19 -3.89 -0.06 -31.63 16 15 C -0.13 -3.90 5.61 -20.09 -0.11 -4.01 16 16 C -0.06 -1.00 7.52 22.53 0.17 -0.83 16 17 C -0.09 -0.81 10.03 22.23 0.22 -0.58 16 18 C -0.02 -0.31 9.55 22.33 0.21 -0.10 16 19 C -0.06 -1.57 6.85 36.34 0.25 -1.32 16 20 N 0.03 0.89 4.45 -46.55 -0.21 0.68 16 21 O -0.23 -7.89 18.44 18.88 0.35 -7.54 16 22 O -0.12 -3.22 18.44 18.89 0.35 -2.87 16 23 C -0.02 -0.68 9.09 22.53 0.20 -0.48 16 24 H 0.05 1.20 7.43 -2.39 -0.02 1.18 16 25 H 0.07 1.17 7.02 -2.39 -0.02 1.15 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.12 2.28 4.04 -2.82 -0.01 2.27 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.90 7.32 -2.39 -0.02 1.88 16 30 H 0.00 -0.12 7.48 -2.38 -0.02 -0.14 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.20 2.58 2.30 -2.91 -0.01 2.57 16 33 H 0.21 -0.50 8.06 -2.91 -0.02 -0.53 16 34 H 0.19 1.34 7.60 -2.91 -0.02 1.32 16 35 H 0.13 4.74 7.37 -2.91 -0.02 4.72 16 Total: -1.00 -81.21 305.89 5.67 -75.54 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.13 Total: -0.06 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.87 Total: -0.52 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.99 Total: -79.60 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: 0.63 Total: -42.04 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.21 5.67 -75.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001587068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.601 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds