Wall clock time and date at job start Mon Mar 30 2020 23:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 C 1.52999 * 109.21810 * 303.81488 * 3 2 1 5 5 C 1.53002 * 109.46945 * 179.97438 * 4 3 2 6 6 C 1.52915 * 109.22051 * 184.46147 * 3 2 1 7 7 O 1.43972 * 109.02742 * 302.83400 * 6 3 2 8 8 P 1.62501 * 118.98478 * 307.31741 * 7 6 3 9 9 O 1.48004 * 110.30683 * 279.63002 * 8 7 6 10 10 O 1.61004 * 110.19086 * 157.78440 * 8 7 6 11 11 C 1.42894 * 123.00051 * 68.72573 * 10 8 7 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99803 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00231 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47177 * 119.99680 * 16 14 12 19 19 H 1.48498 * 109.47460 * 240.00327 * 16 14 12 20 20 O 1.62500 * 105.71071 * 38.73797 * 8 7 6 21 21 C 1.43971 * 118.98999 * 321.26048 * 20 8 7 22 22 H 1.08998 * 109.47193 * 305.40465 * 1 2 3 23 23 H 1.08992 * 109.47523 * 65.40804 * 1 2 3 24 24 H 1.09003 * 109.47412 * 185.40780 * 1 2 3 25 25 H 1.08998 * 109.47013 * 240.00246 * 2 1 3 26 26 H 1.08999 * 109.47320 * 119.99964 * 2 1 3 27 27 H 1.09002 * 109.46634 * 299.99741 * 4 3 2 28 28 H 1.08995 * 109.46945 * 59.99955 * 4 3 2 29 29 H 1.08995 * 109.46961 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47216 * 300.00176 * 5 4 3 31 31 H 1.09006 * 109.47066 * 59.99563 * 5 4 3 32 32 H 1.08998 * 109.54212 * 62.69805 * 6 3 2 33 33 H 1.09004 * 109.54650 * 182.96630 * 6 3 2 34 34 H 1.08995 * 109.47013 * 299.99890 * 11 10 8 35 35 H 1.09000 * 109.47108 * 60.00342 * 11 10 8 36 36 H 0.96995 * 120.00044 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.54267 * 292.81637 * 21 20 8 38 38 H 1.09001 * 109.54335 * 172.54327 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4498 2.1853 -1.2003 5 6 1.9558 3.6293 -1.2056 6 6 3.5650 1.4373 -0.1123 7 8 4.1130 0.6683 0.9745 8 15 3.6668 1.0258 2.4956 9 8 4.4314 2.1906 2.9948 10 8 3.9008 -0.2447 3.4564 11 6 5.1995 -0.7301 3.8024 12 6 5.0637 -1.9246 4.7112 13 1 4.0835 -2.2775 4.9964 14 6 6.1906 -2.5663 5.1795 15 7 7.3841 -2.1363 4.8326 16 14 6.0222 -4.0465 6.3065 17 1 4.5833 -4.3272 6.5433 18 1 6.6583 -5.2280 5.6702 19 1 6.6910 -3.7614 7.6013 20 8 2.0841 1.3856 2.4168 21 6 1.5940 2.1341 1.2889 22 1 -0.3633 0.5954 0.8376 23 1 -0.3634 0.4276 -0.9344 24 1 -0.3634 -1.0231 0.0969 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7564 1.6891 -2.1212 28 1 0.3621 2.1821 -1.1306 29 1 1.5357 4.1583 -2.0609 30 1 1.6489 4.1251 -0.2847 31 1 3.0436 3.6328 -1.2749 32 1 3.8591 0.9887 -1.0612 33 1 3.9380 2.4602 -0.0598 34 1 5.7315 -1.0217 2.8969 35 1 5.7563 0.0548 4.3143 36 1 8.1769 -2.5875 5.1623 37 1 1.9988 3.1456 1.3188 38 1 0.5053 2.1743 1.3232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001842782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:01 Heat of formation + Delta-G solvation = -262.368300 kcal Electronic energy + Delta-G solvation = -20901.121402 eV Core-core repulsion = 17627.260089 eV Total energy + Delta-G solvation = -3273.861313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07314 -36.16127 -35.98354 -35.71404 -32.73793 -32.49091 -32.16933 -28.91904 -27.49437 -26.75117 -24.51182 -23.15489 -22.80078 -20.14860 -17.77701 -17.44345 -16.92538 -16.40796 -16.18258 -15.71352 -15.04053 -14.76671 -14.50786 -14.32504 -14.17761 -13.97053 -13.58327 -13.34121 -12.98624 -12.82895 -12.30369 -12.21437 -11.98483 -11.74787 -11.46353 -11.33661 -11.03283 -10.98459 -10.90041 -10.73994 -10.39969 -10.28221 -10.25373 -9.92367 -9.89336 -9.79518 -9.14886 -8.47736 -6.16577 -4.20408 1.72234 3.27559 3.33833 3.40417 3.52283 4.06501 4.08724 4.21964 4.35630 4.50895 4.77084 4.87703 5.04154 5.10972 5.17904 5.18696 5.20574 5.23857 5.27683 5.42369 5.46057 5.51767 5.61430 5.70677 5.79976 5.84760 5.92094 5.98309 6.10669 6.77989 7.16866 7.24113 7.58714 7.81973 8.01332 8.27811 8.88925 9.43959 10.94177 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.004770 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.708975 B = 5868.494499 C = 6188.880076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.165 4.165 4 C -0.105 4.105 5 C -0.170 4.170 6 C 0.106 3.894 7 O -0.729 6.729 8 P 2.309 2.691 9 O -1.024 7.024 10 O -0.726 6.726 11 C 0.245 3.755 12 C -0.524 4.524 13 H 0.074 0.926 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.280 1.280 20 O -0.715 6.715 21 C 0.104 3.896 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.019 0.981 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 7.968 -15.075 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.166 4.166 4 C -0.142 4.142 5 C -0.227 4.227 6 C 0.032 3.968 7 O -0.747 6.747 8 P 2.589 2.411 9 O -1.123 7.123 10 O -0.757 6.757 11 C 0.175 3.825 12 C -0.562 4.562 13 H 0.092 0.908 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.740 3.260 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.206 1.206 20 O -0.735 6.735 21 C 0.030 3.970 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.545 7.632 -14.909 21.540 hybrid contribution 0.054 -0.888 0.413 0.981 sum -13.491 6.744 -14.496 20.919 Atomic orbital electron populations 1.21890 0.94930 1.02458 1.01996 1.21523 0.96839 0.93535 1.03221 1.22352 0.97171 0.98855 0.98180 1.21486 1.01274 0.95367 0.96104 1.22031 1.02026 0.96074 1.02561 1.22768 0.89215 0.95112 0.89717 1.89030 1.77805 1.70982 1.36873 0.89733 0.48744 0.52900 0.49699 1.95136 1.74927 1.58722 1.83545 1.87834 1.45773 1.66392 1.75661 1.20250 0.71383 0.94987 0.95838 1.21206 0.93895 1.12013 1.29072 0.90826 1.25000 0.94705 0.98147 0.96710 1.69967 0.97643 1.40984 1.44773 0.86202 0.78457 0.81360 0.79983 1.19404 1.20732 1.20600 1.88922 1.55391 1.77368 1.51812 1.22850 1.02082 0.92770 0.79250 0.91950 0.92264 0.92213 0.90553 0.91877 0.90524 0.90236 0.91883 0.91999 0.91946 0.87512 0.90608 0.96285 0.95002 0.92316 0.90581 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.11 37.16 0.34 -1.03 16 2 C -0.11 -1.26 4.58 -26.73 -0.12 -1.38 16 3 C -0.16 -1.73 0.30 -154.60 -0.05 -1.78 16 4 C -0.10 -0.71 4.49 -26.73 -0.12 -0.83 16 5 C -0.17 -1.08 9.23 37.16 0.34 -0.74 16 6 C 0.11 1.33 5.37 37.11 0.20 1.53 16 7 O -0.73 -13.17 10.06 -15.48 -0.16 -13.33 16 8 P 2.31 48.97 6.30 -42.89 -0.27 48.70 16 9 O -1.02 -25.71 18.58 -12.75 -0.24 -25.94 16 10 O -0.73 -18.39 10.17 -14.85 -0.15 -18.54 16 11 C 0.25 7.04 6.20 36.01 0.22 7.27 16 12 C -0.52 -15.66 9.43 -34.44 -0.32 -15.99 16 13 H 0.07 2.15 7.81 -52.48 -0.41 1.74 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 O -0.71 -12.29 9.93 -15.49 -0.15 -12.44 16 21 C 0.10 1.26 5.03 37.11 0.19 1.44 16 22 H 0.06 0.55 6.30 -51.93 -0.33 0.23 16 23 H 0.06 0.39 6.66 -51.93 -0.35 0.05 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.89 6.69 -51.93 -0.35 0.54 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.44 6.46 -51.93 -0.34 0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 6.50 -51.93 -0.34 0.06 16 31 H 0.06 0.41 6.50 -51.93 -0.34 0.08 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.86 6.61 -51.93 -0.34 0.52 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 0.83 6.62 -51.93 -0.34 0.49 16 38 H 0.11 1.02 6.51 -51.93 -0.34 0.68 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -35.71 310.37 -5.56 -41.27 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -5.56 Total: -5.00 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 0.58 Total: -9.97 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -0.70 Total: -70.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 15 Polarization: 48.97 SS G_CDS: -0.27 Total: 48.70 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.71 -5.56 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001842782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.103 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds