Wall clock time and date at job start Mon Mar 30 2020 23:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 C 1.52999 * 109.21810 * 303.81488 * 3 2 1 5 5 C 1.53002 * 109.46945 * 179.97438 * 4 3 2 6 6 C 1.52915 * 109.22051 * 184.46147 * 3 2 1 7 7 O 1.43972 * 109.02742 * 302.83400 * 6 3 2 8 8 P 1.62501 * 118.98478 * 307.31741 * 7 6 3 9 9 O 1.48004 * 110.30683 * 279.63002 * 8 7 6 10 10 O 1.61004 * 110.19086 * 157.78440 * 8 7 6 11 11 C 1.42894 * 123.00051 * 68.72573 * 10 8 7 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99803 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00231 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47177 * 119.99680 * 16 14 12 19 19 H 1.48498 * 109.47460 * 240.00327 * 16 14 12 20 20 O 1.62500 * 105.71071 * 38.73797 * 8 7 6 21 21 C 1.43971 * 118.98999 * 321.26048 * 20 8 7 22 22 H 1.08998 * 109.47193 * 305.40465 * 1 2 3 23 23 H 1.08992 * 109.47523 * 65.40804 * 1 2 3 24 24 H 1.09003 * 109.47412 * 185.40780 * 1 2 3 25 25 H 1.08998 * 109.47013 * 240.00246 * 2 1 3 26 26 H 1.08999 * 109.47320 * 119.99964 * 2 1 3 27 27 H 1.09002 * 109.46634 * 299.99741 * 4 3 2 28 28 H 1.08995 * 109.46945 * 59.99955 * 4 3 2 29 29 H 1.08995 * 109.46961 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47216 * 300.00176 * 5 4 3 31 31 H 1.09006 * 109.47066 * 59.99563 * 5 4 3 32 32 H 1.08998 * 109.54212 * 62.69805 * 6 3 2 33 33 H 1.09004 * 109.54650 * 182.96630 * 6 3 2 34 34 H 1.08995 * 109.47013 * 299.99890 * 11 10 8 35 35 H 1.09000 * 109.47108 * 60.00342 * 11 10 8 36 36 H 0.96995 * 120.00044 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.54267 * 292.81637 * 21 20 8 38 38 H 1.09001 * 109.54335 * 172.54327 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4498 2.1853 -1.2003 5 6 1.9558 3.6293 -1.2056 6 6 3.5650 1.4373 -0.1123 7 8 4.1130 0.6683 0.9745 8 15 3.6668 1.0258 2.4956 9 8 4.4314 2.1906 2.9948 10 8 3.9008 -0.2447 3.4564 11 6 5.1995 -0.7301 3.8024 12 6 5.0637 -1.9246 4.7112 13 1 4.0835 -2.2775 4.9964 14 6 6.1906 -2.5663 5.1795 15 7 7.3841 -2.1363 4.8326 16 14 6.0222 -4.0465 6.3065 17 1 4.5833 -4.3272 6.5433 18 1 6.6583 -5.2280 5.6702 19 1 6.6910 -3.7614 7.6013 20 8 2.0841 1.3856 2.4168 21 6 1.5940 2.1341 1.2889 22 1 -0.3633 0.5954 0.8376 23 1 -0.3634 0.4276 -0.9344 24 1 -0.3634 -1.0231 0.0969 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7564 1.6891 -2.1212 28 1 0.3621 2.1821 -1.1306 29 1 1.5357 4.1583 -2.0609 30 1 1.6489 4.1251 -0.2847 31 1 3.0436 3.6328 -1.2749 32 1 3.8591 0.9887 -1.0612 33 1 3.9380 2.4602 -0.0598 34 1 5.7315 -1.0217 2.8969 35 1 5.7563 0.0548 4.3143 36 1 8.1769 -2.5875 5.1623 37 1 1.9988 3.1456 1.3188 38 1 0.5053 2.1743 1.3232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001842782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:01 Heat of formation + Delta-G solvation = -286.113266 kcal Electronic energy + Delta-G solvation = -20902.151061 eV Core-core repulsion = 17627.260089 eV Total energy + Delta-G solvation = -3274.890972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04043 -38.12079 -37.38142 -36.82962 -34.96047 -34.34685 -32.82935 -29.85580 -29.61793 -27.78509 -25.33623 -24.99094 -23.79816 -21.33679 -19.21543 -18.77649 -18.67712 -18.17842 -17.36108 -16.83032 -16.64964 -16.41322 -15.85185 -15.61841 -15.42195 -15.26024 -14.88423 -14.57884 -14.23332 -13.80556 -13.68498 -13.19191 -13.01499 -12.96275 -12.86627 -12.66161 -12.53857 -12.37628 -12.23152 -11.97286 -11.91789 -11.82970 -11.57529 -11.41437 -11.34601 -11.21992 -11.14005 -10.70825 -8.39392 -6.55235 0.15528 1.39524 1.42012 1.57056 2.27537 2.34478 2.93645 3.17415 3.23893 3.32688 3.54217 3.66972 4.05846 4.08601 4.32543 4.43296 4.48126 4.48889 4.50751 4.54195 4.56632 4.60186 4.83508 4.87802 4.94710 5.07605 5.18099 5.19937 5.22059 5.38945 5.42158 5.46742 5.65108 5.84388 6.00651 6.35331 6.61923 7.16200 8.73197 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.004770 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.708975 B = 5868.494499 C = 6188.880076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.158 4.158 4 C -0.096 4.096 5 C -0.175 4.175 6 C 0.082 3.918 7 O -0.744 6.744 8 P 2.337 2.663 9 O -1.072 7.072 10 O -0.742 6.742 11 C 0.255 3.745 12 C -0.560 4.560 13 H 0.073 0.927 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.993 3.007 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.269 1.269 20 O -0.722 6.722 21 C 0.081 3.919 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.010 0.990 35 H 0.004 0.996 36 H 0.276 0.724 37 H 0.086 0.914 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.316 7.485 -16.397 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.133 4.133 5 C -0.232 4.232 6 C 0.010 3.990 7 O -0.766 6.766 8 P 2.616 2.384 9 O -1.168 7.168 10 O -0.769 6.769 11 C 0.184 3.816 12 C -0.597 4.597 13 H 0.091 0.909 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.814 3.186 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.194 1.194 20 O -0.746 6.746 21 C 0.010 3.990 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.043 0.957 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.103 0.897 34 H 0.028 0.972 35 H 0.022 0.978 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.220 7.182 -16.218 23.372 hybrid contribution 0.530 -0.633 0.677 1.068 sum -14.690 6.548 -15.541 22.365 Atomic orbital electron populations 1.21900 0.93035 1.02604 1.03477 1.21598 0.98575 0.93574 1.02014 1.22340 0.95559 0.98988 0.99004 1.21521 1.02214 0.94942 0.94662 1.22087 1.01778 0.96087 1.03240 1.23426 0.91068 0.95404 0.89074 1.89002 1.78590 1.71881 1.37147 0.88723 0.49200 0.50894 0.49603 1.95085 1.76838 1.60039 1.84842 1.87752 1.44096 1.67768 1.77291 1.19867 0.72458 0.94144 0.95126 1.21530 0.94527 1.13133 1.30558 0.90853 1.26109 0.93889 1.01389 0.97938 1.70074 0.98672 1.42480 1.45533 0.85012 0.79014 0.76944 0.77639 1.18521 1.19115 1.19417 1.88910 1.53283 1.78166 1.54266 1.23515 1.04062 0.92910 0.78559 0.92175 0.89292 0.92548 0.89244 0.95694 0.88749 0.88206 0.90114 0.92322 0.92603 0.84660 0.89711 0.97230 0.97847 0.91474 0.89596 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.11 71.98 0.66 -1.64 16 2 C -0.12 -2.47 4.58 30.59 0.14 -2.33 16 3 C -0.16 -3.01 0.30 -52.24 -0.02 -3.03 16 4 C -0.10 -0.94 4.49 30.59 0.14 -0.80 16 5 C -0.17 -1.71 9.23 71.98 0.66 -1.05 16 6 C 0.08 1.98 5.37 71.95 0.39 2.37 16 7 O -0.74 -27.48 10.06 -15.33 -0.15 -27.63 16 8 P 2.34 102.66 6.30 -40.88 -0.26 102.41 16 9 O -1.07 -56.09 18.58 -8.34 -0.16 -56.24 16 10 O -0.74 -39.41 10.17 -14.81 -0.15 -39.56 16 11 C 0.25 15.37 6.20 71.24 0.44 15.82 16 12 C -0.56 -34.43 9.43 25.60 0.24 -34.18 16 13 H 0.07 4.38 7.81 -2.91 -0.02 4.36 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 16 Si 0.99 44.59 29.54 68.60 2.03 46.62 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 O -0.72 -25.01 9.93 -15.32 -0.15 -25.17 16 21 C 0.08 1.85 5.03 71.95 0.36 2.21 16 22 H 0.06 0.92 6.30 -2.39 -0.02 0.90 16 23 H 0.09 0.80 6.66 -2.39 -0.02 0.78 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.02 0.70 6.69 -2.39 -0.02 0.68 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.63 6.46 -2.39 -0.02 0.61 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.61 6.50 -2.39 -0.02 0.60 16 31 H 0.05 0.62 6.50 -2.38 -0.02 0.61 16 32 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 1.86 6.61 -2.38 -0.02 1.84 16 34 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.09 1.77 6.62 -2.39 -0.02 1.75 16 38 H 0.14 2.26 6.51 -2.39 -0.02 2.24 16 Total: -1.00 -80.20 310.37 5.97 -74.23 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.05 Total: 3.75 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.48 Total: -21.83 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.58 kcal Atomic # 8 Polarization: -147.98 SS G_CDS: -0.61 Total: -148.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 15 Polarization: 102.66 SS G_CDS: -0.26 Total: 102.41 kcal Total: -80.20 5.97 -74.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001842782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.883 kcal (2) G-P(sol) polarization free energy of solvation -80.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -292.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds