Wall clock time and date at job start Mon Mar 30 2020 23:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.53579 * 2 1 4 4 C 1.34514 * 125.78995 * 86.88889 * 3 2 1 5 5 C 1.41378 * 106.83914 * 179.89199 * 4 3 2 6 6 C 1.34515 * 106.84607 * 0.37051 * 5 4 3 7 7 O 1.34302 * 108.41357 * 359.77279 * 6 5 4 8 8 N 1.47310 * 110.60019 * 122.99960 * 2 1 3 9 9 C 1.34525 * 106.61944 * 118.30468 * 8 2 1 10 10 O 1.21544 * 123.77448 * 180.20858 * 9 8 2 11 11 N 1.33789 * 112.45777 * 0.38018 * 9 8 2 12 12 C 1.46506 * 124.17917 * 179.86777 * 11 9 8 13 13 C 1.52998 * 109.46919 * 269.70138 * 12 11 9 14 14 C 1.50696 * 109.47188 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.34763 * 111.64590 * 359.59869 * 11 9 8 23 23 O 1.21235 * 127.16029 * 180.26729 * 22 11 9 24 24 H 1.09003 * 109.47425 * 182.83128 * 1 2 3 25 25 H 1.08998 * 109.47030 * 302.82629 * 1 2 3 26 26 H 1.08994 * 109.47676 * 62.82714 * 1 2 3 27 27 H 1.07998 * 126.57926 * 0.02562 * 4 3 2 28 28 H 1.08001 * 126.57586 * 180.12280 * 5 4 3 29 29 H 1.08002 * 125.79446 * 179.75549 * 6 5 4 30 30 H 0.96997 * 126.69005 * 298.56032 * 8 2 1 31 31 H 1.08996 * 109.47200 * 149.70333 * 12 11 9 32 32 H 1.08997 * 109.47351 * 29.69741 * 12 11 9 33 33 H 1.09004 * 109.47223 * 59.99467 * 13 12 11 34 34 H 1.09010 * 109.47071 * 299.99819 * 13 12 11 35 35 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.2791 2.1686 1.0895 5 6 2.7739 3.4112 0.6312 6 6 2.8184 3.3418 -0.7114 7 8 2.3840 2.1281 -1.0881 8 7 2.0483 -0.7510 1.1565 9 6 2.7558 -1.7819 0.6600 10 8 3.3205 -2.6082 1.3497 11 7 2.7715 -1.7938 -0.6777 12 6 3.4673 -2.8001 -1.4837 13 6 4.8961 -2.3302 -1.7639 14 6 5.6117 -3.3649 -2.5935 15 1 5.0989 -4.2677 -2.8907 16 6 6.9215 -3.1596 -2.9721 17 7 7.5462 -2.0605 -2.6097 18 14 7.8087 -4.4425 -3.9998 19 1 8.4812 -5.4166 -3.1029 20 1 6.8277 -5.1549 -4.8573 21 1 8.8227 -3.7762 -4.8560 22 6 2.0633 -0.7693 -1.1923 23 8 1.8884 -0.5159 -2.3650 24 1 -0.3634 -1.0264 0.0508 25 1 -0.3633 0.5571 0.8636 26 1 -0.3634 0.4693 -0.9142 27 1 2.1124 1.8818 2.1173 28 1 3.0575 4.2557 1.2418 29 1 3.1474 4.1286 -1.3740 30 1 1.9041 -0.5448 2.0932 31 1 2.9390 -2.9390 -2.4269 32 1 3.4955 -3.7447 -0.9405 33 1 5.4244 -2.1912 -0.8207 34 1 4.8679 -1.3855 -2.3072 35 1 7.0853 -1.3941 -2.0763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019509620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:40:00 Heat of formation + Delta-G solvation = -27.930633 kcal Electronic energy + Delta-G solvation = -21944.672075 eV Core-core repulsion = 18524.583565 eV Total energy + Delta-G solvation = -3420.088510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.04609 -42.01346 -38.40279 -36.54032 -35.44470 -33.44690 -33.01579 -31.39083 -29.76592 -28.88514 -25.53314 -24.37809 -22.77805 -22.29699 -21.79490 -20.56795 -19.92512 -18.32012 -17.57676 -17.00509 -16.42621 -16.15562 -15.87758 -15.50328 -15.17151 -14.76694 -13.97050 -13.73820 -13.63733 -13.23762 -13.14406 -13.00666 -12.77055 -12.73775 -12.51024 -12.33664 -11.91144 -10.85994 -10.66046 -10.62750 -10.31367 -10.11465 -10.09455 -9.96763 -9.74887 -9.17909 -8.72027 -8.62103 -8.34411 -6.39238 -4.09235 1.42284 1.74344 2.27042 2.41441 2.75252 3.14272 3.22984 3.45194 3.49164 3.64590 3.94601 4.19685 4.49104 4.55008 4.81149 4.91396 5.15100 5.20485 5.33777 5.40269 5.57222 5.64629 5.66743 5.83785 5.87907 5.98092 6.14630 6.26633 6.48234 6.72823 6.92148 7.15852 7.28215 7.45783 7.53403 8.07884 8.27328 8.41511 8.82531 9.63828 11.01765 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.005183 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.480819 B = 5401.032284 C = 5936.664080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.204 3.796 3 C -0.022 4.022 4 C -0.181 4.181 5 C -0.218 4.218 6 C -0.024 4.024 7 O -0.156 6.156 8 N -0.718 5.718 9 C 0.705 3.295 10 O -0.530 6.530 11 N -0.568 5.568 12 C 0.127 3.873 13 C -0.001 4.001 14 C -0.602 4.602 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.909 5.909 18 Si 1.076 2.924 19 H -0.287 1.287 20 H -0.287 1.287 21 H -0.284 1.284 22 C 0.529 3.471 23 O -0.448 6.448 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.207 0.793 30 H 0.437 0.563 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 9.974 7.973 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.112 3.888 3 C -0.074 4.074 4 C -0.201 4.201 5 C -0.237 4.237 6 C -0.092 4.092 7 O -0.050 6.050 8 N -0.385 5.385 9 C 0.406 3.594 10 O -0.402 6.402 11 N -0.314 5.314 12 C 0.008 3.992 13 C -0.039 4.039 14 C -0.641 4.641 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.544 5.544 18 Si 0.904 3.096 19 H -0.213 1.213 20 H -0.213 1.213 21 H -0.209 1.209 22 C 0.313 3.687 23 O -0.316 6.316 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.224 0.776 30 H 0.282 0.718 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.940 9.089 6.560 17.888 hybrid contribution -1.342 0.808 1.471 2.148 sum -15.282 9.897 8.031 19.899 Atomic orbital electron populations 1.22015 0.88643 1.04328 1.04860 1.19392 0.96657 0.85985 0.86729 1.21574 1.06758 0.93540 0.85540 1.21439 1.05473 0.94209 0.98953 1.21813 1.07533 0.99555 0.94790 1.24221 1.02123 0.86541 0.96341 1.84141 1.63411 1.23510 1.33984 1.45544 1.56520 1.28194 1.08208 1.15891 0.79131 0.82153 0.82237 1.91022 1.47245 1.40893 1.61053 1.46748 1.48258 1.28762 1.07582 1.22097 0.95012 0.88727 0.93366 1.19545 0.89644 0.97631 0.97092 1.21843 0.99943 1.05784 1.36488 0.92750 1.25906 0.95028 1.00105 0.97663 1.70743 1.39976 1.08498 1.35214 0.83453 0.75573 0.74612 0.76002 1.21331 1.21317 1.20949 1.20368 0.78086 0.80814 0.89397 1.90799 1.56483 1.68166 1.16130 0.90235 0.89942 0.89414 0.83294 0.83035 0.77648 0.71842 0.89524 0.89262 0.96694 0.96957 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.96 37.16 0.33 -0.95 16 2 C 0.20 2.68 1.29 -133.25 -0.17 2.51 16 3 C -0.02 -0.30 5.95 -35.63 -0.21 -0.51 16 4 C -0.18 -2.02 10.46 -39.70 -0.42 -2.43 16 5 C -0.22 -2.28 10.91 -39.70 -0.43 -2.71 16 6 C -0.02 -0.27 12.09 29.42 0.36 0.09 16 7 O -0.16 -2.33 10.25 5.71 0.06 -2.27 16 8 N -0.72 -9.14 5.60 -54.02 -0.30 -9.44 16 9 C 0.70 12.63 8.62 -88.02 -0.76 11.87 16 10 O -0.53 -11.22 17.48 5.33 0.09 -11.13 16 11 N -0.57 -10.97 2.60 -120.73 -0.31 -11.28 16 12 C 0.13 2.79 5.64 -4.04 -0.02 2.77 16 13 C 0.00 -0.04 4.61 -27.89 -0.13 -0.17 16 14 C -0.60 -17.56 9.11 -34.44 -0.31 -17.88 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 17 N -0.91 -28.75 13.65 55.43 0.76 -27.99 16 18 Si 1.08 25.82 29.90 -169.99 -5.08 20.73 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.53 9.43 6.79 -10.56 -0.07 9.36 16 23 O -0.45 -9.08 17.62 5.60 0.10 -8.98 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.44 4.02 8.96 -40.82 -0.37 3.65 16 31 H 0.09 1.84 8.00 -51.93 -0.42 1.43 16 32 H 0.09 1.93 7.85 -51.93 -0.41 1.52 16 33 H 0.01 0.43 8.01 -51.93 -0.42 0.02 16 34 H 0.01 0.35 8.01 -51.92 -0.42 -0.06 16 35 H 0.27 8.58 7.22 -40.82 -0.29 8.28 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -36.55 312.71 -5.97 -42.53 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.05 Total: 0.76 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.94 Total: 2.36 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.14 Total: -48.71 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.25 Total: -22.38 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.55 -5.97 -42.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019509620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.594 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds