Wall clock time and date at job start Mon Mar 30 2020 23:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.53579 * 2 1 4 4 C 1.34514 * 125.78995 * 86.88889 * 3 2 1 5 5 C 1.41378 * 106.83914 * 179.89199 * 4 3 2 6 6 C 1.34515 * 106.84607 * 0.37051 * 5 4 3 7 7 O 1.34302 * 108.41357 * 359.77279 * 6 5 4 8 8 N 1.47310 * 110.60019 * 122.99960 * 2 1 3 9 9 C 1.34525 * 106.61944 * 118.30468 * 8 2 1 10 10 O 1.21544 * 123.77448 * 180.20858 * 9 8 2 11 11 N 1.33789 * 112.45777 * 0.38018 * 9 8 2 12 12 C 1.46506 * 124.17917 * 179.86777 * 11 9 8 13 13 C 1.52998 * 109.46919 * 269.70138 * 12 11 9 14 14 C 1.50696 * 109.47188 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.34763 * 111.64590 * 359.59869 * 11 9 8 23 23 O 1.21235 * 127.16029 * 180.26729 * 22 11 9 24 24 H 1.09003 * 109.47425 * 182.83128 * 1 2 3 25 25 H 1.08998 * 109.47030 * 302.82629 * 1 2 3 26 26 H 1.08994 * 109.47676 * 62.82714 * 1 2 3 27 27 H 1.07998 * 126.57926 * 0.02562 * 4 3 2 28 28 H 1.08001 * 126.57586 * 180.12280 * 5 4 3 29 29 H 1.08002 * 125.79446 * 179.75549 * 6 5 4 30 30 H 0.96997 * 126.69005 * 298.56032 * 8 2 1 31 31 H 1.08996 * 109.47200 * 149.70333 * 12 11 9 32 32 H 1.08997 * 109.47351 * 29.69741 * 12 11 9 33 33 H 1.09004 * 109.47223 * 59.99467 * 13 12 11 34 34 H 1.09010 * 109.47071 * 299.99819 * 13 12 11 35 35 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.2791 2.1686 1.0895 5 6 2.7739 3.4112 0.6312 6 6 2.8184 3.3418 -0.7114 7 8 2.3840 2.1281 -1.0881 8 7 2.0483 -0.7510 1.1565 9 6 2.7558 -1.7819 0.6600 10 8 3.3205 -2.6082 1.3497 11 7 2.7715 -1.7938 -0.6777 12 6 3.4673 -2.8001 -1.4837 13 6 4.8961 -2.3302 -1.7639 14 6 5.6117 -3.3649 -2.5935 15 1 5.0989 -4.2677 -2.8907 16 6 6.9215 -3.1596 -2.9721 17 7 7.5462 -2.0605 -2.6097 18 14 7.8087 -4.4425 -3.9998 19 1 8.4812 -5.4166 -3.1029 20 1 6.8277 -5.1549 -4.8573 21 1 8.8227 -3.7762 -4.8560 22 6 2.0633 -0.7693 -1.1923 23 8 1.8884 -0.5159 -2.3650 24 1 -0.3634 -1.0264 0.0508 25 1 -0.3633 0.5571 0.8636 26 1 -0.3634 0.4693 -0.9142 27 1 2.1124 1.8818 2.1173 28 1 3.0575 4.2557 1.2418 29 1 3.1474 4.1286 -1.3740 30 1 1.9041 -0.5448 2.0932 31 1 2.9390 -2.9390 -2.4269 32 1 3.4955 -3.7447 -0.9405 33 1 5.4244 -2.1912 -0.8207 34 1 4.8679 -1.3855 -2.3072 35 1 7.0853 -1.3941 -2.0763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019509620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:40:00 Heat of formation + Delta-G solvation = -54.681772 kcal Electronic energy + Delta-G solvation = -21945.832091 eV Core-core repulsion = 18524.583565 eV Total energy + Delta-G solvation = -3421.248527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.14743 -43.22609 -39.89135 -37.88786 -37.14583 -35.45111 -33.99519 -32.59602 -31.62525 -29.73043 -27.27235 -25.86580 -24.37085 -23.80510 -22.90518 -21.74795 -21.24211 -19.52510 -19.09972 -18.82283 -17.76358 -17.39436 -17.07079 -16.79380 -16.75839 -15.93907 -15.66812 -15.43584 -15.18136 -14.91003 -14.52196 -14.13967 -13.90330 -13.82702 -13.62779 -13.50598 -13.15886 -12.80129 -12.68080 -12.25188 -12.15272 -11.91819 -11.47803 -11.12001 -10.97260 -10.92579 -10.67513 -10.63419 -9.62101 -8.79945 -6.51485 0.25688 0.59344 0.95085 1.51556 1.55907 1.61900 1.70349 1.76936 1.79714 2.04690 2.53643 2.72581 3.08026 3.25810 3.56584 3.78790 4.02832 4.12385 4.20160 4.21883 4.30151 4.48699 4.52095 4.59682 4.75450 4.88316 4.96335 5.02273 5.05217 5.09500 5.48482 5.60873 5.78547 5.86712 6.04540 6.05357 6.14653 6.40378 6.90202 7.32810 8.60615 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.005183 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.480819 B = 5401.032284 C = 5936.664080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.219 3.781 3 C -0.060 4.060 4 C -0.167 4.167 5 C -0.219 4.219 6 C -0.036 4.036 7 O -0.193 6.193 8 N -0.686 5.686 9 C 0.703 3.297 10 O -0.568 6.568 11 N -0.580 5.580 12 C 0.140 3.860 13 C 0.008 3.992 14 C -0.618 4.618 15 H 0.066 0.934 16 C -0.039 4.039 17 N -0.933 5.933 18 Si 1.128 2.872 19 H -0.270 1.270 20 H -0.262 1.262 21 H -0.282 1.282 22 C 0.519 3.481 23 O -0.481 6.481 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.181 0.819 29 H 0.234 0.766 30 H 0.457 0.543 31 H 0.093 0.907 32 H 0.094 0.906 33 H -0.015 1.015 34 H -0.018 1.018 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 10.363 8.968 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.128 3.872 3 C -0.111 4.111 4 C -0.186 4.186 5 C -0.238 4.238 6 C -0.103 4.103 7 O -0.089 6.089 8 N -0.354 5.354 9 C 0.404 3.596 10 O -0.443 6.443 11 N -0.325 5.325 12 C 0.020 3.980 13 C -0.029 4.029 14 C -0.656 4.656 15 H 0.084 0.916 16 C -0.236 4.236 17 N -0.570 5.570 18 Si 0.947 3.053 19 H -0.195 1.195 20 H -0.187 1.187 21 H -0.208 1.208 22 C 0.306 3.694 23 O -0.350 6.350 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.104 0.896 27 H 0.197 0.803 28 H 0.199 0.801 29 H 0.250 0.750 30 H 0.306 0.694 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.003 0.997 34 H 0.001 0.999 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.201 9.530 7.615 19.490 hybrid contribution -0.983 0.814 1.177 1.736 sum -16.183 10.343 8.792 21.123 Atomic orbital electron populations 1.22114 0.85083 1.05601 1.06487 1.19463 0.98848 0.85183 0.83709 1.21700 1.09402 0.93782 0.86176 1.21880 1.03291 0.93852 0.99621 1.22243 1.06712 1.00186 0.94670 1.24985 1.01523 0.86061 0.97770 1.84113 1.64468 1.25004 1.35332 1.45329 1.54616 1.26182 1.09247 1.15980 0.79294 0.82856 0.81514 1.90995 1.49076 1.42674 1.61553 1.46719 1.48484 1.28965 1.08343 1.21644 0.92417 0.89527 0.94440 1.19354 0.92606 0.96114 0.94874 1.22303 1.00531 1.06444 1.36345 0.91586 1.27682 0.96503 1.01206 0.98210 1.70897 1.40201 1.09411 1.36483 0.82829 0.75076 0.72405 0.74978 1.19505 1.18668 1.20753 1.21252 0.77289 0.80447 0.90460 1.90765 1.57567 1.68784 1.17926 0.89366 0.86295 0.89560 0.80306 0.80143 0.74985 0.69406 0.88872 0.88816 0.99673 0.99942 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.96 71.98 0.65 -1.48 16 2 C 0.22 5.47 1.29 2.24 0.00 5.47 16 3 C -0.06 -1.53 5.95 24.83 0.15 -1.38 16 4 C -0.17 -3.25 10.46 22.19 0.23 -3.01 16 5 C -0.22 -4.00 10.91 22.19 0.24 -3.76 16 6 C -0.04 -0.77 12.09 66.97 0.81 0.04 16 7 O -0.19 -5.73 10.25 -2.47 -0.03 -5.76 16 8 N -0.69 -16.29 5.60 -443.26 -2.48 -18.78 16 9 C 0.70 25.15 8.62 179.44 1.55 26.70 16 10 O -0.57 -24.28 17.48 -3.86 -0.07 -24.35 16 11 N -0.58 -22.88 2.60 -773.12 -2.01 -24.90 16 12 C 0.14 6.38 5.64 86.38 0.49 6.86 16 13 C 0.01 0.48 4.61 29.85 0.14 0.61 16 14 C -0.62 -36.79 9.11 25.60 0.23 -36.56 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 16 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 17 N -0.93 -60.73 13.65 21.45 0.29 -60.44 16 18 Si 1.13 51.49 29.90 68.60 2.05 53.54 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C 0.52 18.77 6.79 87.94 0.60 19.37 16 23 O -0.48 -20.14 17.62 -2.89 -0.05 -20.19 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.23 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.46 7.07 8.96 -92.71 -0.83 6.23 16 31 H 0.09 4.07 8.00 -2.39 -0.02 4.05 16 32 H 0.09 4.15 7.85 -2.39 -0.02 4.13 16 33 H -0.02 -0.93 8.01 -2.38 -0.02 -0.95 16 34 H -0.02 -1.10 8.01 -2.38 -0.02 -1.11 16 35 H 0.25 16.79 7.22 -92.71 -0.67 16.12 16 Total: -1.00 -83.23 312.71 3.64 -79.59 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.39 Total: 10.30 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.54 Total: 10.98 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -4.20 Total: -104.11 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.14 Total: -50.30 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -83.23 3.64 -79.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019509620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.909 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds